RNA–Protein interactions for RNA: ENST00000488543.1

HDAC6-230, Transcript of histone deacetylase 6, humanhuman

TSL 2

Gene HDAC6, Length 2,484 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-230ENST00000488543 ARTNQ5T4W7 220 aa12.51□□□□□ -0.41
HDAC6-230ENST00000488543 CEP128Q6ZU80 1094 aa12.51□□□□□ -0.41
HDAC6-230ENST00000488543 DENND5BQ6ZUT9 1274 aa12.51□□□□□ -0.41
HDAC6-230ENST00000488543 TRPM8Q7Z2W7 1104 aa12.51□□□□□ -0.41
HDAC6-230ENST00000488543 TMC7Q7Z402 723 aa12.51□□□□□ -0.41
HDAC6-230ENST00000488543 HS6ST3Q8IZP7 471 aa12.51□□□□□ -0.41
HDAC6-230ENST00000488543 NETO2Q8NC67 525 aa12.51□□□□□ -0.41
HDAC6-230ENST00000488543 CASP10Q92851 521 aa12.51□□□□□ -0.41
HDAC6-230ENST00000488543 TKTL2Q9H0I9 626 aa12.51□□□□□ -0.41
HDAC6-230ENST00000488543 KDM4CQ9H3R0 1056 aa12.51□□□□□ -0.41
HDAC6-230ENST00000488543 SMOC2Q9H3U7 446 aa12.51□□□□□ -0.41
HDAC6-230ENST00000488543 WDCPQ9H6R7 721 aa12.51□□□□□ -0.41
HDAC6-230ENST00000488543 CYP4F11Q9HBI6 524 aa12.51□□□□□ -0.41
HDAC6-230ENST00000488543 PAK5Q9P286 719 aa12.51□□□□□ -0.41
HDAC6-230ENST00000488543 EYSQ5T1H1 3165 aa12.51□□□□□ -0.41
HDAC6-230ENST00000488543 GOLGA8MH3BSY2 632 aa12.5□□□□□ -0.41
HDAC6-230ENST00000488543 ALOX15BO15296 676 aa12.5□□□□□ -0.41
HDAC6-230ENST00000488543 LILRB3O75022 631 aa12.5□□□□□ -0.41
HDAC6-230ENST00000488543 SPAG7O75391 227 aa12.5□□□□□ -0.41
HDAC6-230ENST00000488543 CNPP09543 421 aaKnown RBP12.5□□□□□ -0.41
HDAC6-230ENST00000488543 MSS51Q4VC12 460 aa12.5□□□□□ -0.41
HDAC6-230ENST00000488543 BTBD8Q5XKL5 378 aa12.5□□□□□ -0.41
HDAC6-230ENST00000488543 FAM47EQ6ZV65 393 aa12.5□□□□□ -0.41
HDAC6-230ENST00000488543 TP53INP2Q8IXH6 220 aa12.5□□□□□ -0.41
HDAC6-230ENST00000488543 PAIP2Q9BPZ3 127 aaKnown RBP12.5□□□□□ -0.41
HDAC6-230ENST00000488543 WDR83Q9BRX9 315 aaKnown RBP12.5□□□□□ -0.41
HDAC6-230ENST00000488543 PHACTR1Q9C0D0 580 aa12.5□□□□□ -0.41
HDAC6-230ENST00000488543 ZBP1Q9H171 429 aa12.5□□□□□ -0.41
HDAC6-230ENST00000488543 KIF9Q9HAQ2 790 aa12.5□□□□□ -0.41
HDAC6-230ENST00000488543 ARHGEF38Q9NXL2 777 aa12.5□□□□□ -0.41
HDAC6-230ENST00000488543 SFMBT1Q9UHJ3 866 aa12.5□□□□□ -0.41
HDAC6-230ENST00000488543 DYNC1LI1Q9Y6G9 523 aaKnown RBP12.5□□□□□ -0.41
HDAC6-230ENST00000488543 FAM92AA1XBS5 289 aa12.5□□□□□ -0.41
HDAC6-230ENST00000488543 HIDE1A8MVS5 230 aa12.5□□□□□ -0.41
HDAC6-230ENST00000488543 HACD1B0YJ81 288 aa12.5□□□□□ -0.41
HDAC6-230ENST00000488543 E7ESA3 106 aa12.5□□□□□ -0.41
HDAC6-230ENST00000488543 CHUKO15111 745 aa12.5□□□□□ -0.41
HDAC6-230ENST00000488543 CXCL14O95715 111 aa12.5□□□□□ -0.41
HDAC6-230ENST00000488543 TBX18O95935 607 aa12.5□□□□□ -0.41
HDAC6-230ENST00000488543 CA3P07451 260 aa12.5□□□□□ -0.41
HDAC6-230ENST00000488543 BRAFP15056 766 aa12.5□□□□□ -0.41
HDAC6-230ENST00000488543 ERCC2P18074 760 aa12.5□□□□□ -0.41
HDAC6-230ENST00000488543 PBX2P40425 430 aa12.5□□□□□ -0.41
HDAC6-230ENST00000488543 BASP1P80723 227 aaKnown RBP12.5□□□□□ -0.41
HDAC6-230ENST00000488543 PRKD1Q15139 912 aaPredicted RBP12.5□□□□□ -0.41
HDAC6-230ENST00000488543 TMED2Q15363 201 aa12.5□□□□□ -0.41
HDAC6-230ENST00000488543 ARL13BQ3SXY8 428 aa12.5□□□□□ -0.41
HDAC6-230ENST00000488543 ACCSLQ4AC99 568 aa12.5□□□□□ -0.41
HDAC6-230ENST00000488543 KIRREL3Q8IZU9 778 aa12.5□□□□□ -0.41
HDAC6-230ENST00000488543 ANKS4BQ8N8V4 417 aa12.5□□□□□ -0.41
HDAC6-230ENST00000488543 CCDC110Q8TBZ0 833 aa12.5□□□□□ -0.41
HDAC6-230ENST00000488543 SPOCK2Q92563 424 aa12.5□□□□□ -0.41
HDAC6-230ENST00000488543 RMDN2Q96LZ7 410 aa12.5□□□□□ -0.41
HDAC6-230ENST00000488543 CERS4Q9HA82 394 aa12.5□□□□□ -0.41
HDAC6-230ENST00000488543 GMIPQ9P107 970 aa12.5□□□□□ -0.41
HDAC6-230ENST00000488543 NEU3Q9UQ49 428 aa12.5□□□□□ -0.41
HDAC6-230ENST00000488543 NR2E3Q9Y5X4 410 aa12.5□□□□□ -0.41
HDAC6-230ENST00000488543 MSI1O43347 362 aaKnown RBP12.49□□□□□ -0.41
HDAC6-230ENST00000488543 SNX3O60493 162 aa12.49□□□□□ -0.41
HDAC6-230ENST00000488543 GCATO75600 419 aa12.49□□□□□ -0.41
HDAC6-230ENST00000488543 ABHD2P08910 425 aa12.49□□□□□ -0.41
HDAC6-230ENST00000488543 CTSAP10619 480 aa12.49□□□□□ -0.41
HDAC6-230ENST00000488543 MAGEA6P43360 314 aa12.49□□□□□ -0.41
HDAC6-230ENST00000488543 TPI1P60174 286 aa12.49□□□□□ -0.41
HDAC6-230ENST00000488543 TAF10Q12962 218 aa12.49□□□□□ -0.41
HDAC6-230ENST00000488543 HIF1AQ16665 826 aa12.49□□□□□ -0.41
HDAC6-230ENST00000488543 CGB2Q6NT52 195 aa12.49□□□□□ -0.41
HDAC6-230ENST00000488543 MSANTD2Q6P1R3 559 aa12.49□□□□□ -0.41
HDAC6-230ENST00000488543 CENPUQ71F23 418 aa12.49□□□□□ -0.41
HDAC6-230ENST00000488543 LGMNQ99538 433 aa12.49□□□□□ -0.41
HDAC6-230ENST00000488543 ROPN1BQ9BZX4 212 aaPredicted RBP12.49□□□□□ -0.41
HDAC6-230ENST00000488543 OSBPL2Q9H1P3 480 aa12.49□□□□□ -0.41
HDAC6-230ENST00000488543 ROPN1Q9HAT0 212 aaPredicted RBP12.49□□□□□ -0.41
HDAC6-230ENST00000488543 AFF4Q9UHB7 1163 aaKnown RBP12.49□□□□□ -0.41
HDAC6-230ENST00000488543 XPO7Q9UIA9 1087 aaKnown RBP12.49□□□□□ -0.41
HDAC6-230ENST00000488543 SLC12A4Q9UP95 1085 aa12.49□□□□□ -0.41
HDAC6-230ENST00000488543 PDE4DIPQ5VU43 2346 aa12.49□□□□□ -0.41
HDAC6-230ENST00000488543 SMAPO00193 183 aa12.49□□□□□ -0.41
HDAC6-230ENST00000488543 CHADO15335 359 aa12.49□□□□□ -0.41
HDAC6-230ENST00000488543 TCEA3O75764 348 aa12.49□□□□□ -0.41
HDAC6-230ENST00000488543 DNAJC8O75937 253 aaPredicted RBP12.49□□□□□ -0.41
HDAC6-230ENST00000488543 YWHAQP27348 245 aa12.49□□□□□ -0.41
HDAC6-230ENST00000488543 PDIA2Q13087 525 aaKnown RBP12.49□□□□□ -0.41
HDAC6-230ENST00000488543 CBLBQ13191 982 aa12.49□□□□□ -0.41
HDAC6-230ENST00000488543 TAOK1Q7L7X3 1001 aa12.49□□□□□ -0.41
HDAC6-230ENST00000488543 MON1AQ86VX9 555 aa12.49□□□□□ -0.41
HDAC6-230ENST00000488543 CCDC63Q8NA47 563 aa12.49□□□□□ -0.41
HDAC6-230ENST00000488543 SPPL3Q8TCT6 385 aa12.49□□□□□ -0.41
HDAC6-230ENST00000488543 TFB1MQ8WVM0 346 aaKnown RBP12.49□□□□□ -0.41
HDAC6-230ENST00000488543 TCF25Q9BQ70 676 aa12.49□□□□□ -0.41
HDAC6-230ENST00000488543 OXCT2Q9BYC2 517 aaPredicted RBP12.49□□□□□ -0.41
HDAC6-230ENST00000488543 MTIF3Q9H2K0 278 aaKnown RBP12.49□□□□□ -0.41
HDAC6-230ENST00000488543 RAB6BQ9NRW1 208 aa12.49□□□□□ -0.41
HDAC6-230ENST00000488543 L3MBTL1Q9Y468 752 aa12.49□□□□□ -0.41
HDAC6-230ENST00000488543 UNC80Q8N2C7 3258 aa12.48□□□□□ -0.41
HDAC6-230ENST00000488543 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP12.48□□□□□ -0.41
HDAC6-230ENST00000488543 LRIG2O94898 1065 aa12.48□□□□□ -0.41
HDAC6-230ENST00000488543 METTL18O95568 372 aa12.48□□□□□ -0.41
HDAC6-230ENST00000488543 ATP6V1G2O95670 118 aa12.48□□□□□ -0.41
HDAC6-230ENST00000488543 ARL4CP56559 192 aa12.48□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 19.1 ms