RNA–Protein interactions for RNA: ENST00000486741.5

HMGN1-216, Transcript of high mobility group nucleosome binding domain 1, humanhuman

TSL 2

Gene HMGN1, Length 4,299 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGN1-216ENST00000486741 CTBP1Q13363 440 aa13.53□□□□□ -0.24
HMGN1-216ENST00000486741 ZRANB3Q5FWF4 1079 aa13.53□□□□□ -0.24
HMGN1-216ENST00000486741 IFNEQ86WN2 208 aa13.53□□□□□ -0.24
HMGN1-216ENST00000486741 FCRL2Q96LA5 508 aaPredicted RBP13.53□□□□□ -0.24
HMGN1-216ENST00000486741 ILKAPQ9H0C8 392 aaPredicted RBP13.53□□□□□ -0.24
HMGN1-216ENST00000486741 NDE1Q9NXR1 346 aa13.53□□□□□ -0.24
HMGN1-216ENST00000486741 DTLQ9NZJ0 730 aa13.53□□□□□ -0.24
HMGN1-216ENST00000486741 MEIS3P2A8K0S8 358 aa13.52□□□□□ -0.24
HMGN1-216ENST00000486741 LYPLA1O75608 230 aaPredicted RBP13.52□□□□□ -0.24
HMGN1-216ENST00000486741 ATP6V1G2O95670 118 aa13.52□□□□□ -0.24
HMGN1-216ENST00000486741 SLC2A3P11169 496 aa13.52□□□□□ -0.24
HMGN1-216ENST00000486741 CHRM3P20309 590 aa13.52□□□□□ -0.24
HMGN1-216ENST00000486741 FOXN2P32314 431 aa13.52□□□□□ -0.24
HMGN1-216ENST00000486741 SLC1A6P48664 564 aa13.52□□□□□ -0.24
HMGN1-216ENST00000486741 PITX1P78337 314 aaPredicted RBP13.52□□□□□ -0.24
HMGN1-216ENST00000486741 GHRHRQ02643 423 aa13.52□□□□□ -0.24
HMGN1-216ENST00000486741 ENPEPQ07075 957 aa13.52□□□□□ -0.24
HMGN1-216ENST00000486741 RCN1Q15293 331 aa13.52□□□□□ -0.24
HMGN1-216ENST00000486741 FAM228AQ86W67 206 aa13.52□□□□□ -0.24
HMGN1-216ENST00000486741 TEX9Q8N6V9 391 aa13.52□□□□□ -0.24
HMGN1-216ENST00000486741 CERS2Q96G23 380 aa13.52□□□□□ -0.24
HMGN1-216ENST00000486741 UTP6Q9NYH9 597 aaKnown RBP13.52□□□□□ -0.24
HMGN1-216ENST00000486741 DERAQ9Y315 318 aa13.52□□□□□ -0.24
HMGN1-216ENST00000486741 HACD1B0YJ81 288 aa13.52□□□□□ -0.25
HMGN1-216ENST00000486741 FGFR1P11362 822 aa13.52□□□□□ -0.25
HMGN1-216ENST00000486741 PBX3P40426 434 aa13.52□□□□□ -0.25
HMGN1-216ENST00000486741 WDR4P57081 412 aaKnown RBP13.52□□□□□ -0.25
HMGN1-216ENST00000486741 PRKCZQ05513 592 aa13.52□□□□□ -0.25
HMGN1-216ENST00000486741 OLIG2Q13516 323 aa13.52□□□□□ -0.25
HMGN1-216ENST00000486741 SIX1Q15475 284 aaPredicted RBP13.52□□□□□ -0.25
HMGN1-216ENST00000486741 TIGD5Q53EQ6 642 aa13.52□□□□□ -0.25
HMGN1-216ENST00000486741 STRADAQ7RTN6 431 aa13.52□□□□□ -0.25
HMGN1-216ENST00000486741 EXOC2Q96KP1 924 aa13.52□□□□□ -0.25
HMGN1-216ENST00000486741 FAM96AQ9H5X1 160 aa13.52□□□□□ -0.25
HMGN1-216ENST00000486741 CNGB3Q9NQW8 809 aa13.52□□□□□ -0.25
HMGN1-216ENST00000486741 MARCH2Q9P0N8 246 aa13.52□□□□□ -0.25
HMGN1-216ENST00000486741 CRYL1Q9Y2S2 319 aa13.52□□□□□ -0.25
HMGN1-216ENST00000486741 CDY1Q9Y6F8 540 aa13.52□□□□□ -0.25
HMGN1-216ENST00000486741 H0Y626 953 aa13.52□□□□□ -0.25
HMGN1-216ENST00000486741 ZBTB24O43167 697 aaPredicted RBP13.52□□□□□ -0.25
HMGN1-216ENST00000486741 RAMP2O60895 175 aa13.52□□□□□ -0.25
HMGN1-216ENST00000486741 DUSP11O75319 330 aaKnown RBP13.52□□□□□ -0.25
HMGN1-216ENST00000486741 CCNB1P14635 433 aa13.52□□□□□ -0.25
HMGN1-216ENST00000486741 GRK4P32298 578 aa13.52□□□□□ -0.25
HMGN1-216ENST00000486741 ZNF252P-AS1Q0IIN9 211 aa13.52□□□□□ -0.25
HMGN1-216ENST00000486741 OASLQ15646 514 aaKnown RBP13.52□□□□□ -0.25
HMGN1-216ENST00000486741 PPM1JQ5JR12 505 aa13.52□□□□□ -0.25
HMGN1-216ENST00000486741 FITM2Q8N6M3 262 aa13.52□□□□□ -0.25
HMGN1-216ENST00000486741 RNF148Q8N7C7 305 aa13.52□□□□□ -0.25
HMGN1-216ENST00000486741 OMDQ99983 421 aa13.52□□□□□ -0.25
HMGN1-216ENST00000486741 PRKAG2Q9UGJ0 569 aa13.52□□□□□ -0.25
HMGN1-216ENST00000486741 PACSIN3Q9UKS6 424 aa13.52□□□□□ -0.25
HMGN1-216ENST00000486741 ACTL7BQ9Y614 415 aa13.52□□□□□ -0.25
HMGN1-216ENST00000486741 CITO14578 2027 aa13.51□□□□□ -0.25
HMGN1-216ENST00000486741 SOAT2O75908 522 aa13.51□□□□□ -0.25
HMGN1-216ENST00000486741 LUC7L3O95232 432 aaKnown RBP13.51□□□□□ -0.25
HMGN1-216ENST00000486741 CHEK2O96017 543 aa13.51□□□□□ -0.25
HMGN1-216ENST00000486741 CCND1P24385 295 aa13.51□□□□□ -0.25
HMGN1-216ENST00000486741 ELF3P78545 371 aaPredicted RBP13.51□□□□□ -0.25
HMGN1-216ENST00000486741 ANKS1BQ7Z6G8 1248 aa13.51□□□□□ -0.25
HMGN1-216ENST00000486741 MPP5Q8N3R9 675 aa13.51□□□□□ -0.25
HMGN1-216ENST00000486741 SPATA22Q8NHS9 363 aa13.51□□□□□ -0.25
HMGN1-216ENST00000486741 TMEM40Q8WWA1 233 aa13.51□□□□□ -0.25
HMGN1-216ENST00000486741 B3GALT6Q96L58 329 aa13.51□□□□□ -0.25
HMGN1-216ENST00000486741 CINPQ9BW66 212 aaPredicted RBP13.51□□□□□ -0.25
HMGN1-216ENST00000486741 GPAMQ9HCL2 828 aa13.51□□□□□ -0.25
HMGN1-216ENST00000486741 MAN1C1Q9NR34 630 aa13.51□□□□□ -0.25
HMGN1-216ENST00000486741 AAASQ9NRG9 546 aa13.51□□□□□ -0.25
HMGN1-216ENST00000486741 IGKV6-21A0A0C4DH24 114 aa13.51□□□□□ -0.25
HMGN1-216ENST00000486741 AP3B1O00203 1094 aa13.51□□□□□ -0.25
HMGN1-216ENST00000486741 DAB1O75553 588 aa13.51□□□□□ -0.25
HMGN1-216ENST00000486741 CKMP06732 381 aa13.51□□□□□ -0.25
HMGN1-216ENST00000486741 ZNF132P52740 706 aa13.51□□□□□ -0.25
HMGN1-216ENST00000486741 KLF1Q13351 362 aaPredicted RBP13.51□□□□□ -0.25
HMGN1-216ENST00000486741 OSTM1Q86WC4 334 aa13.51□□□□□ -0.25
HMGN1-216ENST00000486741 RFWD2Q8NHY2 731 aa13.51□□□□□ -0.25
HMGN1-216ENST00000486741 TEKT4Q8WW24 435 aa13.51□□□□□ -0.25
HMGN1-216ENST00000486741 AZIN2Q96A70 460 aa13.51□□□□□ -0.25
HMGN1-216ENST00000486741 SPDL1Q96EA4 605 aa13.51□□□□□ -0.25
HMGN1-216ENST00000486741 OXNAD1Q96HP4 312 aaPredicted RBP13.51□□□□□ -0.25
HMGN1-216ENST00000486741 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP13.51□□□□□ -0.25
HMGN1-216ENST00000486741 RHOBTB1O94844 696 aa13.51□□□□□ -0.25
HMGN1-216ENST00000486741 ATXN8OSP0DMR3 200 aa13.51□□□□□ -0.25
HMGN1-216ENST00000486741 RECQLP46063 649 aaPredicted RBP13.51□□□□□ -0.25
HMGN1-216ENST00000486741 NUDT2P50583 147 aa13.51□□□□□ -0.25
HMGN1-216ENST00000486741 INHBEP58166 350 aa13.51□□□□□ -0.25
HMGN1-216ENST00000486741 AP2B1P63010 937 aa13.51□□□□□ -0.25
HMGN1-216ENST00000486741 ZNF177Q13360 481 aaPredicted RBP13.51□□□□□ -0.25
HMGN1-216ENST00000486741 GRB14Q14449 540 aa13.51□□□□□ -0.25
HMGN1-216ENST00000486741 C16orf59Q7L2K0 433 aa13.51□□□□□ -0.25
HMGN1-216ENST00000486741 LGI2Q8N0V4 545 aa13.51□□□□□ -0.25
HMGN1-216ENST00000486741 ARRDC4Q8NCT1 418 aa13.51□□□□□ -0.25
HMGN1-216ENST00000486741 LRRC39Q96DD0 335 aa13.51□□□□□ -0.25
HMGN1-216ENST00000486741 MFSD3Q96ES6 412 aa13.51□□□□□ -0.25
HMGN1-216ENST00000486741 MAF1Q9H063 256 aa13.51□□□□□ -0.25
HMGN1-216ENST00000486741 HMX1Q9NP08 348 aaPredicted RBP13.51□□□□□ -0.25
HMGN1-216ENST00000486741 ABCC13Q9NSE7 274 aa13.51□□□□□ -0.25
HMGN1-216ENST00000486741 TRIM17Q9Y577 477 aa13.51□□□□□ -0.25
HMGN1-216ENST00000486741 ENO4A6NNW6 628 aa13.5□□□□□ -0.25
HMGN1-216ENST00000486741 EDF1O60869 148 aaKnown RBP13.5□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 32.3 ms