RNA–Protein interactions for RNA: ENST00000479656.5

APTX-223, Transcript of aprataxin, human

TSL 1 (best)

Gene APTX, Length 1,881 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
APTX-223	ENST00000479656	P3H1	Q32P28	736 aa		11.53	□□□□□ -0.56
APTX-223	ENST00000479656	HEATR6	Q6AI08	1181 aa	Known RBP	11.53	□□□□□ -0.56
APTX-223	ENST00000479656	ZDHHC24	Q6UX98	284 aa		11.53	□□□□□ -0.56
APTX-223	ENST00000479656	CIR1	Q86X95	450 aa	Predicted RBP	11.53	□□□□□ -0.56
APTX-223	ENST00000479656	TAB3	Q8N5C8	712 aa	Predicted RBP	11.53	□□□□□ -0.56
APTX-223	ENST00000479656	CCHCR1	Q8TD31	782 aa		11.53	□□□□□ -0.56
APTX-223	ENST00000479656	AEN	Q8WTP8	325 aa	Known RBP	11.53	□□□□□ -0.56
APTX-223	ENST00000479656	DEPDC1B	Q8WUY9	529 aa		11.53	□□□□□ -0.56
APTX-223	ENST00000479656	SMG7	Q92540	1137 aa	Known RBP	11.53	□□□□□ -0.56
APTX-223	ENST00000479656	SNF8	Q96H20	258 aa		11.53	□□□□□ -0.56
APTX-223	ENST00000479656	QKI	Q96PU8	341 aa	Known RBP eCLIP	11.53	□□□□□ -0.56
APTX-223	ENST00000479656	SLC39A8	Q9C0K1	460 aa		11.53	□□□□□ -0.56
APTX-223	ENST00000479656	PRO3102	Q9H379	93 aa		11.53	□□□□□ -0.56
APTX-223	ENST00000479656	PCDH9	Q9HC56	1237 aa		11.53	□□□□□ -0.56
APTX-223	ENST00000479656	ZDHHC18	Q9NUE0	388 aa		11.53	□□□□□ -0.56
APTX-223	ENST00000479656	RAD54B	Q9Y620	910 aa		11.53	□□□□□ -0.56
APTX-223	ENST00000479656	OBSL1	O75147	1896 aa		11.52	□□□□□ -0.56
APTX-223	ENST00000479656	DOCK6	Q96HP0	2047 aa		11.52	□□□□□ -0.57
APTX-223	ENST00000479656	CFAP69	A5D8W1	941 aa		11.52	□□□□□ -0.57
APTX-223	ENST00000479656	DFFA	O00273	331 aa		11.52	□□□□□ -0.57
APTX-223	ENST00000479656	PPP1R12A	O14974	1030 aa	Predicted RBP	11.52	□□□□□ -0.57
APTX-223	ENST00000479656	TP73	O15350	636 aa		11.52	□□□□□ -0.57
APTX-223	ENST00000479656	NCAM2	O15394	837 aa		11.52	□□□□□ -0.57
APTX-223	ENST00000479656	GREM1	O60565	184 aa		11.52	□□□□□ -0.57
APTX-223	ENST00000479656	TSPAN3	O60637	253 aa		11.52	□□□□□ -0.57
APTX-223	ENST00000479656	RGS19	P49795	217 aa		11.52	□□□□□ -0.57
APTX-223	ENST00000479656	ITGA8	P53708	1063 aa		11.52	□□□□□ -0.57
APTX-223	ENST00000479656	CALCOCO2	Q13137	446 aa		11.52	□□□□□ -0.57
APTX-223	ENST00000479656	PRKD1	Q15139	912 aa	Predicted RBP	11.52	□□□□□ -0.57
APTX-223	ENST00000479656	MAP9	Q49MG5	647 aa		11.52	□□□□□ -0.57
APTX-223	ENST00000479656	ARHGAP15	Q53QZ3	475 aa		11.52	□□□□□ -0.57
APTX-223	ENST00000479656	PRSS36	Q5K4E3	855 aa		11.52	□□□□□ -0.57
APTX-223	ENST00000479656	ADGRF1	Q5T601	910 aa		11.52	□□□□□ -0.57
APTX-223	ENST00000479656	ARHGAP12	Q8IWW6	846 aa		11.52	□□□□□ -0.57
APTX-223	ENST00000479656	CMTM8	Q8IZV2	173 aa		11.52	□□□□□ -0.57
APTX-223	ENST00000479656	LZTR1	Q8N653	840 aa		11.52	□□□□□ -0.57
APTX-223	ENST00000479656	EIF1AD	Q8N9N8	165 aa	Known RBP	11.52	□□□□□ -0.57
APTX-223	ENST00000479656	LEMD2	Q8NC56	503 aa		11.52	□□□□□ -0.57
APTX-223	ENST00000479656	CCDC110	Q8TBZ0	833 aa		11.52	□□□□□ -0.57
APTX-223	ENST00000479656	FBXO25	Q8TCJ0	367 aa		11.52	□□□□□ -0.57
APTX-223	ENST00000479656	HTR3C	Q8WXA8	447 aa		11.52	□□□□□ -0.57
APTX-223	ENST00000479656	ART4	Q93070	314 aa		11.52	□□□□□ -0.57
APTX-223	ENST00000479656	P2RY11	Q96G91	374 aa		11.52	□□□□□ -0.57
APTX-223	ENST00000479656	ZNF576	Q9H609	170 aa		11.52	□□□□□ -0.57
APTX-223	ENST00000479656	TASP1	Q9H6P5	420 aa		11.52	□□□□□ -0.57
APTX-223	ENST00000479656	TMEM248	Q9NWD8	314 aa		11.52	□□□□□ -0.57
APTX-223	ENST00000479656	WHRN	Q9P202	907 aa		11.52	□□□□□ -0.57
APTX-223	ENST00000479656	CFAP97	Q9P2B7	532 aa		11.52	□□□□□ -0.57
APTX-223	ENST00000479656	ANAPC5	Q9UJX4	755 aa		11.52	□□□□□ -0.57
APTX-223	ENST00000479656	ZFP37	Q9Y6Q3	630 aa	Predicted RBP	11.52	□□□□□ -0.57
APTX-223	ENST00000479656	ATG2A	Q2TAZ0	1938 aa		11.52	□□□□□ -0.57
APTX-223	ENST00000479656	PFKL	P17858	780 aa		11.51	□□□□□ -0.57
APTX-223	ENST00000479656	MX2	P20592	715 aa		11.51	□□□□□ -0.57
APTX-223	ENST00000479656	GARS	P41250	739 aa	Known RBP	11.51	□□□□□ -0.57
APTX-223	ENST00000479656	RPS24	P62847	133 aa	Known RBP	11.51	□□□□□ -0.57
APTX-223	ENST00000479656	GALNT2	Q10471	571 aa		11.51	□□□□□ -0.57
APTX-223	ENST00000479656	CBX2	Q14781	532 aa	Predicted RBP	11.51	□□□□□ -0.57
APTX-223	ENST00000479656	C5orf22	Q49AR2	442 aa		11.51	□□□□□ -0.57
APTX-223	ENST00000479656	IZUMO3	Q5VZ72	239 aa		11.51	□□□□□ -0.57
APTX-223	ENST00000479656	POTEH	Q6S545	545 aa		11.51	□□□□□ -0.57
APTX-223	ENST00000479656	ARHGAP36	Q6ZRI8	547 aa		11.51	□□□□□ -0.57
APTX-223	ENST00000479656	ING5	Q8WYH8	240 aa		11.51	□□□□□ -0.57
APTX-223	ENST00000479656	LRRC45	Q96CN5	670 aa		11.51	□□□□□ -0.57
APTX-223	ENST00000479656	RTP4	Q96DX8	246 aa		11.51	□□□□□ -0.57
APTX-223	ENST00000479656	ZSWIM3	Q96MP5	696 aa		11.51	□□□□□ -0.57
APTX-223	ENST00000479656	CDCA3	Q99618	268 aa	Predicted RBP	11.51	□□□□□ -0.57
APTX-223	ENST00000479656	APOL5	Q9BWW9	433 aa		11.51	□□□□□ -0.57
APTX-223	ENST00000479656	ADAM7	Q9H2U9	754 aa		11.51	□□□□□ -0.57
APTX-223	ENST00000479656	NOL6	Q9H6R4	1146 aa	Known RBP	11.51	□□□□□ -0.57
APTX-223	ENST00000479656	SEPT10	Q9P0V9	454 aa		11.51	□□□□□ -0.57
APTX-223	ENST00000479656	TPX2	Q9ULW0	747 aa	Known RBP	11.51	□□□□□ -0.57
APTX-223	ENST00000479656	SH3BP1	Q9Y3L3	701 aa		11.51	□□□□□ -0.57
APTX-223	ENST00000479656	CLUH	O75153	1309 aa		11.51	□□□□□ -0.57
APTX-223	ENST00000479656	DENND4C	Q5VZ89	1909 aa		11.51	□□□□□ -0.57
APTX-223	ENST00000479656	KCNK1	O00180	336 aa		11.51	□□□□□ -0.57
APTX-223	ENST00000479656	LEFTY2	O00292	366 aa		11.51	□□□□□ -0.57
APTX-223	ENST00000479656	DNALI1	O14645	258 aa	Predicted RBP	11.51	□□□□□ -0.57
APTX-223	ENST00000479656	ZNF197	O14709	1029 aa		11.51	□□□□□ -0.57
APTX-223	ENST00000479656	LINC01565	O15544	149 aa		11.51	□□□□□ -0.57
APTX-223	ENST00000479656	POU2F2	P09086	479 aa		11.51	□□□□□ -0.57
APTX-223	ENST00000479656	DDX6	P26196	483 aa	Known RBP eCLIP	11.51	□□□□□ -0.57
APTX-223	ENST00000479656	ACTN2	P35609	894 aa		11.51	□□□□□ -0.57
APTX-223	ENST00000479656	AVPR1A	P37288	418 aa		11.51	□□□□□ -0.57
APTX-223	ENST00000479656	PAPOLA	P51003	745 aa	Known RBP	11.51	□□□□□ -0.57
APTX-223	ENST00000479656	SGSH	P51688	502 aa		11.51	□□□□□ -0.57
APTX-223	ENST00000479656	PPID	Q08752	370 aa	Known RBP	11.51	□□□□□ -0.57
APTX-223	ENST00000479656	HYAL1	Q12794	435 aa		11.51	□□□□□ -0.57
APTX-223	ENST00000479656	TCEAL5	Q5H9L2	206 aa		11.51	□□□□□ -0.57
APTX-223	ENST00000479656	AFMID	Q63HM1	303 aa		11.51	□□□□□ -0.57
APTX-223	ENST00000479656		Q6ZNB5	142 aa		11.51	□□□□□ -0.57
APTX-223	ENST00000479656	HTR3D	Q70Z44	454 aa		11.51	□□□□□ -0.57
APTX-223	ENST00000479656	UMODL1-AS1	Q8N2C9	162 aa		11.51	□□□□□ -0.57
APTX-223	ENST00000479656	ITFG1	Q8TB96	612 aa		11.51	□□□□□ -0.57
APTX-223	ENST00000479656	DGCR8	Q8WYQ5	773 aa	Known RBP eCLIP	11.51	□□□□□ -0.57
APTX-223	ENST00000479656	PPP2R3C	Q969Q6	453 aa		11.51	□□□□□ -0.57
APTX-223	ENST00000479656	HDAC11	Q96DB2	347 aa		11.51	□□□□□ -0.57
APTX-223	ENST00000479656	PRICKLE1	Q96MT3	831 aa	Predicted RBP	11.51	□□□□□ -0.57
APTX-223	ENST00000479656	DDX50	Q9BQ39	737 aa	Known RBP	11.51	□□□□□ -0.57
APTX-223	ENST00000479656	CEP41	Q9BYV8	373 aa		11.51	□□□□□ -0.57
APTX-223	ENST00000479656	NSUN3	Q9H649	340 aa	Known RBP	11.51	□□□□□ -0.57

Retrieved 100 of 20,778 RNA–protein pairs in 29.6 ms