RNA–Protein interactions for RNA: ENST00000478840.1

UPF3B-203, Transcript of UPF3B, regulator of nonsense mediated mRNA decay, humanhuman

TSL 3

Gene UPF3B, Length 748 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3B-203ENST00000478840 CYP2C18P33260 490 aa5.61□□□□□ -1.51
UPF3B-203ENST00000478840 BSGP35613 385 aa5.61□□□□□ -1.51
UPF3B-203ENST00000478840 MTNR1AP48039 350 aa5.61□□□□□ -1.51
UPF3B-203ENST00000478840 AGTR2P50052 363 aa5.61□□□□□ -1.51
UPF3B-203ENST00000478840 SLC37A1P57057 533 aa5.61□□□□□ -1.51
UPF3B-203ENST00000478840 CUL4AQ13619 759 aa5.61□□□□□ -1.51
UPF3B-203ENST00000478840 ERCC6LQ2NKX8 1250 aa5.61□□□□□ -1.51
UPF3B-203ENST00000478840 RNASE12Q5GAN4 147 aaKnown RBP5.61□□□□□ -1.51
UPF3B-203ENST00000478840 GJB7Q6PEY0 223 aa5.61□□□□□ -1.51
UPF3B-203ENST00000478840 SLC22A25Q6T423 547 aa5.61□□□□□ -1.51
UPF3B-203ENST00000478840 CCDC105Q8IYK2 499 aa5.61□□□□□ -1.51
UPF3B-203ENST00000478840 ADGRF3Q8IZF5 1079 aa5.61□□□□□ -1.51
UPF3B-203ENST00000478840 EXD3Q8N9H8 876 aa5.61□□□□□ -1.51
UPF3B-203ENST00000478840 AKAP1Q92667 903 aaKnown RBP eCLIP5.61□□□□□ -1.51
UPF3B-203ENST00000478840 USP6NLQ92738 828 aa5.61□□□□□ -1.51
UPF3B-203ENST00000478840 EXTL1Q92935 676 aa5.61□□□□□ -1.51
UPF3B-203ENST00000478840 C5orf34Q96MH7 638 aa5.61□□□□□ -1.51
UPF3B-203ENST00000478840 CTDSP1Q9GZU7 261 aa5.61□□□□□ -1.51
UPF3B-203ENST00000478840 RANBP17Q9H2T7 1088 aaKnown RBP5.61□□□□□ -1.51
UPF3B-203ENST00000478840 USP29Q9HBJ7 922 aa5.61□□□□□ -1.51
UPF3B-203ENST00000478840 PLSCR4Q9NRQ2 329 aa5.61□□□□□ -1.51
UPF3B-203ENST00000478840 CCNL1Q9UK58 526 aaPredicted RBP5.61□□□□□ -1.51
UPF3B-203ENST00000478840 ADAMTS5Q9UNA0 930 aa5.61□□□□□ -1.51
UPF3B-203ENST00000478840 B3GNT3Q9Y2A9 372 aa5.61□□□□□ -1.51
UPF3B-203ENST00000478840 H0YIZ8 118 aa5.6□□□□□ -1.51
UPF3B-203ENST00000478840 CCNDBP1O95273 360 aa5.6□□□□□ -1.51
UPF3B-203ENST00000478840 URODP06132 367 aa5.6□□□□□ -1.51
UPF3B-203ENST00000478840 APEHP13798 732 aaKnown RBP5.6□□□□□ -1.51
UPF3B-203ENST00000478840 TM4SF1P30408 202 aa5.6□□□□□ -1.51
UPF3B-203ENST00000478840 PTGS2P35354 604 aa5.6□□□□□ -1.51
UPF3B-203ENST00000478840 ARL3P36405 182 aa5.6□□□□□ -1.51
UPF3B-203ENST00000478840 STAT6P42226 847 aa5.6□□□□□ -1.51
UPF3B-203ENST00000478840 RPS3AP61247 264 aaKnown RBP5.6□□□□□ -1.51
UPF3B-203ENST00000478840 ARHGAP8P85298 464 aa5.6□□□□□ -1.51
UPF3B-203ENST00000478840 GAB1Q13480 694 aa5.6□□□□□ -1.51
UPF3B-203ENST00000478840 TDGQ13569 410 aa5.6□□□□□ -1.51
UPF3B-203ENST00000478840 ACVR2BQ13705 512 aa5.6□□□□□ -1.51
UPF3B-203ENST00000478840 SEMA3AQ14563 771 aa5.6□□□□□ -1.51
UPF3B-203ENST00000478840 NAA25Q14CX7 972 aa5.6□□□□□ -1.51
UPF3B-203ENST00000478840 GXYLT1Q4G148 440 aa5.6□□□□□ -1.51
UPF3B-203ENST00000478840 MTFR2Q6P444 385 aa5.6□□□□□ -1.51
UPF3B-203ENST00000478840 KIRREL2Q6UWL6 708 aa5.6□□□□□ -1.51
UPF3B-203ENST00000478840 KRT77Q7Z794 578 aa5.6□□□□□ -1.51
UPF3B-203ENST00000478840 MON1AQ86VX9 555 aa5.6□□□□□ -1.51
UPF3B-203ENST00000478840 KCNG4Q8TDN1 519 aa5.6□□□□□ -1.51
UPF3B-203ENST00000478840 NOC3LQ8WTT2 800 aaKnown RBP5.6□□□□□ -1.51
UPF3B-203ENST00000478840 CACTINQ8WUQ7 758 aaKnown RBP5.6□□□□□ -1.51
UPF3B-203ENST00000478840 RAB40AQ8WXH6 277 aa5.6□□□□□ -1.51
UPF3B-203ENST00000478840 NCSTNQ92542 709 aa5.6□□□□□ -1.51
UPF3B-203ENST00000478840 ATP2A3Q93084 1043 aa5.6□□□□□ -1.51
UPF3B-203ENST00000478840 ZNF845Q96IR2 970 aaPredicted RBP5.6□□□□□ -1.51
UPF3B-203ENST00000478840 EYA3Q99504 573 aa5.6□□□□□ -1.51
UPF3B-203ENST00000478840 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP5.6□□□□□ -1.51
UPF3B-203ENST00000478840 NPLQ9BXD5 320 aaPredicted RBP5.6□□□□□ -1.51
UPF3B-203ENST00000478840 SYNCQ9H7C4 482 aa5.6□□□□□ -1.51
UPF3B-203ENST00000478840 HAUS2Q9NVX0 235 aa5.6□□□□□ -1.51
UPF3B-203ENST00000478840 MPP6Q9NZW5 540 aa5.6□□□□□ -1.51
UPF3B-203ENST00000478840 VPS4AQ9UN37 437 aa5.6□□□□□ -1.51
UPF3B-203ENST00000478840 CCDC151A5D8V7 595 aa5.59□□□□□ -1.51
UPF3B-203ENST00000478840 TTC34A8MYJ7 566 aa5.59□□□□□ -1.51
UPF3B-203ENST00000478840 PRYO14603 147 aa5.59□□□□□ -1.51
UPF3B-203ENST00000478840 TGFB1I1O43294 461 aa5.59□□□□□ -1.51
UPF3B-203ENST00000478840 CYP4B1P13584 511 aa5.59□□□□□ -1.51
UPF3B-203ENST00000478840 COX7A2P14406 83 aa5.59□□□□□ -1.51
UPF3B-203ENST00000478840 PKMP14618 531 aaKnown RBP5.59□□□□□ -1.51
UPF3B-203ENST00000478840 ENGP17813 658 aa5.59□□□□□ -1.51
UPF3B-203ENST00000478840 NDUFS1P28331 727 aa5.59□□□□□ -1.51
UPF3B-203ENST00000478840 ABCD1P33897 745 aa5.59□□□□□ -1.51
UPF3B-203ENST00000478840 GJC1P36383 396 aa5.59□□□□□ -1.51
UPF3B-203ENST00000478840 HARS2P49590 506 aaKnown RBP5.59□□□□□ -1.51
UPF3B-203ENST00000478840 RARSP54136 660 aaKnown RBP5.59□□□□□ -1.51
UPF3B-203ENST00000478840 UFM1P61960 85 aa5.59□□□□□ -1.51
UPF3B-203ENST00000478840 WDR5P61964 334 aaKnown RBP5.59□□□□□ -1.51
UPF3B-203ENST00000478840 B4GALNT1Q00973 533 aa5.59□□□□□ -1.51
UPF3B-203ENST00000478840 POU5F1Q01860 360 aaKnown RBP5.59□□□□□ -1.51
UPF3B-203ENST00000478840 DCTN2Q13561 401 aaKnown RBP5.59□□□□□ -1.51
UPF3B-203ENST00000478840 BYSLQ13895 437 aaKnown RBP5.59□□□□□ -1.51
UPF3B-203ENST00000478840 CCDC96Q2M329 555 aa5.59□□□□□ -1.51
UPF3B-203ENST00000478840 USP39Q53GS9 565 aaKnown RBP5.59□□□□□ -1.51
UPF3B-203ENST00000478840 AARS2Q5JTZ9 985 aaKnown RBP5.59□□□□□ -1.51
UPF3B-203ENST00000478840 SH2D4BQ5SQS7 431 aa5.59□□□□□ -1.51
UPF3B-203ENST00000478840 LCE4AQ5TA78 99 aa5.59□□□□□ -1.51
UPF3B-203ENST00000478840 KAZNQ674X7 775 aa5.59□□□□□ -1.51
UPF3B-203ENST00000478840 Q6ZNX1 250 aa5.59□□□□□ -1.51
UPF3B-203ENST00000478840 ENOSF1Q7L5Y1 443 aa5.59□□□□□ -1.51
UPF3B-203ENST00000478840 TFAP2BQ92481 460 aa5.59□□□□□ -1.51
UPF3B-203ENST00000478840 KCNJ9Q92806 393 aa5.59□□□□□ -1.51
UPF3B-203ENST00000478840 HAS1Q92839 578 aa5.59□□□□□ -1.51
UPF3B-203ENST00000478840 SAAL1Q96ER3 474 aa5.59□□□□□ -1.51
UPF3B-203ENST00000478840 CDK5RAP1Q96SZ6 601 aaKnown RBP5.59□□□□□ -1.51
UPF3B-203ENST00000478840 CENPOQ9BU64 300 aa5.59□□□□□ -1.51
UPF3B-203ENST00000478840 HDHD5Q9BXW7 423 aa5.59□□□□□ -1.51
UPF3B-203ENST00000478840 TTYH1Q9H313 450 aaPredicted RBP5.59□□□□□ -1.51
UPF3B-203ENST00000478840 EPHX3Q9H6B9 360 aa5.59□□□□□ -1.51
UPF3B-203ENST00000478840 TTC12Q9H892 705 aaPredicted RBP5.59□□□□□ -1.51
UPF3B-203ENST00000478840 EIF2B3Q9NR50 452 aaKnown RBP5.59□□□□□ -1.51
UPF3B-203ENST00000478840 ANKFY1Q9P2R3 1169 aa5.59□□□□□ -1.51
UPF3B-203ENST00000478840 HDAC6Q9UBN7 1215 aa5.59□□□□□ -1.51
UPF3B-203ENST00000478840 PKP3Q9Y446 797 aa5.59□□□□□ -1.51
UPF3B-203ENST00000478840 LYVE1Q9Y5Y7 322 aa5.59□□□□□ -1.51
Retrieved 100 of 20,778 RNA–protein pairs in 29 ms