RNA–Protein interactions for RNA: ENST00000476215.5

PTCD3-211, Transcript of pentatricopeptide repeat domain 3, humanhuman

TSL 3

Gene PTCD3, Length 754 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD3-211ENST00000476215 KCNJ9Q92806 393 aa5.5□□□□□ -1.53
PTCD3-211ENST00000476215 KAT2BQ92831 832 aa5.5□□□□□ -1.53
PTCD3-211ENST00000476215 NPAS1Q99742 590 aa5.5□□□□□ -1.53
PTCD3-211ENST00000476215 FAM118BQ9BPY3 351 aa5.5□□□□□ -1.53
PTCD3-211ENST00000476215 NOD2Q9HC29 1040 aa5.5□□□□□ -1.53
PTCD3-211ENST00000476215 ERVK-5Q9HDB9 667 aa5.5□□□□□ -1.53
PTCD3-211ENST00000476215 MLXIPLQ9NP71 852 aa5.5□□□□□ -1.53
PTCD3-211ENST00000476215 RIC8AQ9NPQ8 531 aa5.5□□□□□ -1.53
PTCD3-211ENST00000476215 SAGE1Q9NXZ1 904 aa5.5□□□□□ -1.53
PTCD3-211ENST00000476215 MTMR4Q9NYA4 1195 aa5.5□□□□□ -1.53
PTCD3-211ENST00000476215 CCDC189A1A4V9 331 aa5.49□□□□□ -1.53
PTCD3-211ENST00000476215 SLC22A23A1A5C7 686 aa5.49□□□□□ -1.53
PTCD3-211ENST00000476215 USP12O75317 370 aa5.49□□□□□ -1.53
PTCD3-211ENST00000476215 CD63P08962 238 aa5.49□□□□□ -1.53
PTCD3-211ENST00000476215 CSF1P09603 554 aa5.49□□□□□ -1.53
PTCD3-211ENST00000476215 CKMT1AP12532 417 aa5.49□□□□□ -1.53
PTCD3-211ENST00000476215 ACP5P13686 325 aa5.49□□□□□ -1.53
PTCD3-211ENST00000476215 HOXA7P31268 230 aaPredicted RBP5.49□□□□□ -1.53
PTCD3-211ENST00000476215 ARHGAP25P42331 645 aa5.49□□□□□ -1.53
PTCD3-211ENST00000476215 SLC12A1Q13621 1099 aa5.49□□□□□ -1.53
PTCD3-211ENST00000476215 EFR3AQ14156 821 aa5.49□□□□□ -1.53
PTCD3-211ENST00000476215 CTXN3Q4LDR2 81 aa5.49□□□□□ -1.53
PTCD3-211ENST00000476215 MEX3CQ5U5Q3 659 aaKnown RBP5.49□□□□□ -1.53
PTCD3-211ENST00000476215 LIPMQ5VYY2 423 aa5.49□□□□□ -1.53
PTCD3-211ENST00000476215 PAPD7Q5XG87 772 aaKnown RBP5.49□□□□□ -1.53
PTCD3-211ENST00000476215 ANO7Q6IWH7 933 aa5.49□□□□□ -1.53
PTCD3-211ENST00000476215 ZNF474Q6S9Z5 364 aaPredicted RBP5.49□□□□□ -1.53
PTCD3-211ENST00000476215 ENDOVQ8N8Q3 282 aaKnown RBP5.49□□□□□ -1.53
PTCD3-211ENST00000476215 LINS1Q8NG48 757 aa5.49□□□□□ -1.53
PTCD3-211ENST00000476215 ATP2A3Q93084 1043 aa5.49□□□□□ -1.53
PTCD3-211ENST00000476215 RBM17Q96I25 401 aaKnown RBP5.49□□□□□ -1.53
PTCD3-211ENST00000476215 ZNF347Q96SE7 839 aa5.49□□□□□ -1.53
PTCD3-211ENST00000476215 QTRT1Q9BXR0 403 aaKnown RBP5.49□□□□□ -1.53
PTCD3-211ENST00000476215 RASSF1Q9NS23 344 aa5.49□□□□□ -1.53
PTCD3-211ENST00000476215 IPO11Q9UI26 975 aaKnown RBP5.49□□□□□ -1.53
PTCD3-211ENST00000476215 SLC25A13Q9UJS0 675 aa5.49□□□□□ -1.53
PTCD3-211ENST00000476215 DNAJC16Q9Y2G8 782 aa5.49□□□□□ -1.53
PTCD3-211ENST00000476215 LMTK3Q96Q04 1460 aa5.49□□□□□ -1.53
PTCD3-211ENST00000476215 SMIM35A0A1B0GVV1 85 aa5.48□□□□□ -1.53
PTCD3-211ENST00000476215 SGPL1O95470 568 aa5.48□□□□□ -1.53
PTCD3-211ENST00000476215 LYL1P12980 280 aa5.48□□□□□ -1.53
PTCD3-211ENST00000476215 PRPH2P23942 346 aa5.48□□□□□ -1.53
PTCD3-211ENST00000476215 PNPLA4P41247 253 aa5.48□□□□□ -1.53
PTCD3-211ENST00000476215 HSF1Q00613 529 aa5.48□□□□□ -1.53
PTCD3-211ENST00000476215 GHRHRQ02643 423 aa5.48□□□□□ -1.53
PTCD3-211ENST00000476215 SLC18B1Q6NT16 456 aa5.48□□□□□ -1.53
PTCD3-211ENST00000476215 YTHDF3Q7Z739 585 aaKnown RBP5.48□□□□□ -1.53
PTCD3-211ENST00000476215 ZFPM2Q8WW38 1151 aa5.48□□□□□ -1.53
PTCD3-211ENST00000476215 ADAD1Q96M93 576 aaKnown RBP5.48□□□□□ -1.53
PTCD3-211ENST00000476215 HERC2P3Q9BVR0 1158 aa5.48□□□□□ -1.53
PTCD3-211ENST00000476215 HDHD5Q9BXW7 423 aa5.48□□□□□ -1.53
PTCD3-211ENST00000476215 TRIM31Q9BZY9 425 aa5.48□□□□□ -1.53
PTCD3-211ENST00000476215 ZNF70Q9UC06 446 aaPredicted RBP5.48□□□□□ -1.53
PTCD3-211ENST00000476215 SLC8A2Q9UPR5 921 aa5.48□□□□□ -1.53
PTCD3-211ENST00000476215 CPA1P15085 419 aa5.47□□□□□ -1.53
PTCD3-211ENST00000476215 TFEBP19484 476 aa5.47□□□□□ -1.53
PTCD3-211ENST00000476215 ATP5F1P24539 256 aaPredicted RBP5.47□□□□□ -1.53
PTCD3-211ENST00000476215 CNTFP26441 200 aa5.47□□□□□ -1.53
PTCD3-211ENST00000476215 ADPRHP54922 357 aa5.47□□□□□ -1.53
PTCD3-211ENST00000476215 SLC12A2P55011 1212 aa5.47□□□□□ -1.53
PTCD3-211ENST00000476215 STIM1Q13586 685 aa5.47□□□□□ -1.53
PTCD3-211ENST00000476215 ALKBH1Q13686 389 aaKnown RBP5.47□□□□□ -1.53
PTCD3-211ENST00000476215 ANKRD1Q15327 319 aa5.47□□□□□ -1.53
PTCD3-211ENST00000476215 SUPT20HL1Q3ZLR7 823 aa5.47□□□□□ -1.53
PTCD3-211ENST00000476215 RUNDC3AQ59EK9 446 aa5.47□□□□□ -1.53
PTCD3-211ENST00000476215 ARL13AQ5H913 290 aaPredicted RBP5.47□□□□□ -1.53
PTCD3-211ENST00000476215 MDGA2Q7Z553 956 aa5.47□□□□□ -1.53
PTCD3-211ENST00000476215 LRRTM4Q86VH4 590 aa5.47□□□□□ -1.53
PTCD3-211ENST00000476215 TMEM200AQ86VY9 491 aa5.47□□□□□ -1.53
PTCD3-211ENST00000476215 VPS52Q8N1B4 723 aa5.47□□□□□ -1.53
PTCD3-211ENST00000476215 ANKRD44Q8N8A2 993 aa5.47□□□□□ -1.53
PTCD3-211ENST00000476215 EXD3Q8N9H8 876 aa5.47□□□□□ -1.53
PTCD3-211ENST00000476215 FAM47BQ8NA70 645 aa5.47□□□□□ -1.53
PTCD3-211ENST00000476215 OR52N4Q8NGI2 321 aa5.47□□□□□ -1.53
PTCD3-211ENST00000476215 GADD45GIP1Q8TAE8 222 aaPredicted RBP5.47□□□□□ -1.53
PTCD3-211ENST00000476215 SCNM1Q9BWG6 230 aa5.47□□□□□ -1.53
PTCD3-211ENST00000476215 PI4KBQ9UBF8 816 aa5.47□□□□□ -1.53
PTCD3-211ENST00000476215 GTF2A1LQ9UNN4 478 aa5.47□□□□□ -1.53
PTCD3-211ENST00000476215 ZNF804BA4D1E1 1349 aa5.47□□□□□ -1.53
PTCD3-211ENST00000476215 RRN3P2A6NIE6 340 aa5.46□□□□□ -1.54
PTCD3-211ENST00000476215 NPIPB13A6NJU9 1138 aa5.46□□□□□ -1.54
PTCD3-211ENST00000476215 C2CD4BA6NLJ0 364 aa5.46□□□□□ -1.54
PTCD3-211ENST00000476215 NPIPB5A8MRT5 1133 aa5.46□□□□□ -1.54
PTCD3-211ENST00000476215 KCNU1A8MYU2 1149 aa5.46□□□□□ -1.54
PTCD3-211ENST00000476215 NPIPB4C9JG80 1138 aa5.46□□□□□ -1.54
PTCD3-211ENST00000476215 MCIDASD6RGH6 385 aa5.46□□□□□ -1.54
PTCD3-211ENST00000476215 NCAM2O15394 837 aa5.46□□□□□ -1.54
PTCD3-211ENST00000476215 PKMP14618 531 aaKnown RBP5.46□□□□□ -1.54
PTCD3-211ENST00000476215 ABCG1P45844 678 aa5.46□□□□□ -1.54
PTCD3-211ENST00000476215 UBE3AQ05086 875 aa5.46□□□□□ -1.54
PTCD3-211ENST00000476215 THOC5Q13769 683 aaKnown RBP5.46□□□□□ -1.54
PTCD3-211ENST00000476215 SLC9C1Q4G0N8 1177 aa5.46□□□□□ -1.54
PTCD3-211ENST00000476215 EARS2Q5JPH6 523 aaKnown RBP5.46□□□□□ -1.54
PTCD3-211ENST00000476215 MTFR2Q6P444 385 aa5.46□□□□□ -1.54
PTCD3-211ENST00000476215 NEK8Q86SG6 692 aa5.46□□□□□ -1.54
PTCD3-211ENST00000476215 CPOQ8IVL8 374 aa5.46□□□□□ -1.54
PTCD3-211ENST00000476215 ADGRF4Q8IZF3 695 aa5.46□□□□□ -1.54
PTCD3-211ENST00000476215 PAQR4Q8N4S7 273 aaPredicted RBP5.46□□□□□ -1.54
PTCD3-211ENST00000476215 ARL14EPQ8N8R7 260 aaPredicted RBP5.46□□□□□ -1.54
PTCD3-211ENST00000476215 USP13Q92995 863 aaPredicted RBP5.46□□□□□ -1.54
Retrieved 100 of 20,778 RNA–protein pairs in 19.4 ms