RNA–Protein interactions for RNA: ENST00000474929.1

USP54-211, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 4

Gene USP54, Length 590 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-211ENST00000474929 TMEM145Q8NBT3 493 aa8.38□□□□□ -1.07
USP54-211ENST00000474929 OR6C4Q8NGE1 309 aa8.38□□□□□ -1.07
USP54-211ENST00000474929 BTN2A2Q8WVV5 523 aa8.38□□□□□ -1.07
USP54-211ENST00000474929 TNFRSF25Q93038 417 aa8.38□□□□□ -1.07
USP54-211ENST00000474929 ZNF274Q96GC6 653 aaPredicted RBP8.38□□□□□ -1.07
USP54-211ENST00000474929 SLC45A3Q96JT2 553 aa8.38□□□□□ -1.07
USP54-211ENST00000474929 TBATAQ96M53 351 aa8.38□□□□□ -1.07
USP54-211ENST00000474929 JAKMIP1Q96N16 626 aaKnown RBP8.38□□□□□ -1.07
USP54-211ENST00000474929 CALN1Q9BXU9 219 aa8.38□□□□□ -1.07
USP54-211ENST00000474929 IRX2Q9BZI1 471 aaPredicted RBP8.38□□□□□ -1.07
USP54-211ENST00000474929 PREBQ9HCU5 417 aa8.38□□□□□ -1.07
USP54-211ENST00000474929 ARHGAP20Q9P2F6 1191 aa8.38□□□□□ -1.07
USP54-211ENST00000474929 GGA2Q9UJY4 613 aa8.38□□□□□ -1.07
USP54-211ENST00000474929 SCN8AQ9UQD0 1980 aa8.38□□□□□ -1.07
USP54-211ENST00000474929 ARHGAP10A1A4S6 786 aa8.37□□□□□ -1.07
USP54-211ENST00000474929 A6NNZ2 444 aa8.37□□□□□ -1.07
USP54-211ENST00000474929 MUSKO15146 869 aa8.37□□□□□ -1.07
USP54-211ENST00000474929 AQP9O43315 295 aa8.37□□□□□ -1.07
USP54-211ENST00000474929 HCRTO43612 131 aa8.37□□□□□ -1.07
USP54-211ENST00000474929 PLRG1O43660 514 aaKnown RBP8.37□□□□□ -1.07
USP54-211ENST00000474929 CDC45O75419 566 aa8.37□□□□□ -1.07
USP54-211ENST00000474929 LDHAP00338 332 aaKnown RBP8.37□□□□□ -1.07
USP54-211ENST00000474929 PABPC1P11940 636 aaKnown RBP8.37□□□□□ -1.07
USP54-211ENST00000474929 DRD2P14416 443 aa8.37□□□□□ -1.07
USP54-211ENST00000474929 NME1P15531 152 aaKnown RBP8.37□□□□□ -1.07
USP54-211ENST00000474929 TRIM21P19474 475 aaKnown RBP8.37□□□□□ -1.07
USP54-211ENST00000474929 RPS6KB1P23443 525 aa8.37□□□□□ -1.07
USP54-211ENST00000474929 HLA-FP30511 346 aa8.37□□□□□ -1.07
USP54-211ENST00000474929 CORO1AP31146 461 aaKnown RBP8.37□□□□□ -1.07
USP54-211ENST00000474929 MCM7P33993 719 aa8.37□□□□□ -1.07
USP54-211ENST00000474929 PTGER4P35408 488 aa8.37□□□□□ -1.07
USP54-211ENST00000474929 CCDC15Q0P6D6 951 aa8.37□□□□□ -1.07
USP54-211ENST00000474929 ELAVL3Q14576 367 aaKnown RBP8.37□□□□□ -1.07
USP54-211ENST00000474929 C10orf120Q5SQS8 335 aa8.37□□□□□ -1.07
USP54-211ENST00000474929 PPP1R26Q5T8A7 1209 aaPredicted RBP8.37□□□□□ -1.07
USP54-211ENST00000474929 NUGGCQ68CJ6 796 aa8.37□□□□□ -1.07
USP54-211ENST00000474929 MBLAC2Q68D91 279 aa8.37□□□□□ -1.07
USP54-211ENST00000474929 CRTC1Q6UUV9 634 aa8.37□□□□□ -1.07
USP54-211ENST00000474929 ASB18Q6ZVZ8 466 aa8.37□□□□□ -1.07
USP54-211ENST00000474929 FAM35AQ86V20 835 aa8.37□□□□□ -1.07
USP54-211ENST00000474929 PARGQ86W56 976 aa8.37□□□□□ -1.07
USP54-211ENST00000474929 MMAAQ8IVH4 418 aaKnown RBP8.37□□□□□ -1.07
USP54-211ENST00000474929 BRSK2Q8IWQ3 736 aa8.37□□□□□ -1.07
USP54-211ENST00000474929 RASEFQ8IZ41 740 aa8.37□□□□□ -1.07
USP54-211ENST00000474929 ZNF276Q8N554 614 aa8.37□□□□□ -1.07
USP54-211ENST00000474929 B3GALNT2Q8NCR0 500 aa8.37□□□□□ -1.07
USP54-211ENST00000474929 CCDC112Q8NEF3 446 aa8.37□□□□□ -1.07
USP54-211ENST00000474929 CYB5D2Q8WUJ1 264 aa8.37□□□□□ -1.07
USP54-211ENST00000474929 HDAC11Q96DB2 347 aa8.37□□□□□ -1.07
USP54-211ENST00000474929 ANKRD36BP1Q96IX9 119 aa8.37□□□□□ -1.07
USP54-211ENST00000474929 BOCQ9BWV1 1114 aa8.37□□□□□ -1.07
USP54-211ENST00000474929 ZNF518BQ9C0D4 1074 aa8.37□□□□□ -1.07
USP54-211ENST00000474929 TMEM60Q9H2L4 133 aa8.37□□□□□ -1.07
USP54-211ENST00000474929 DNAJC28Q9NX36 388 aa8.37□□□□□ -1.07
USP54-211ENST00000474929 GGT7Q9UJ14 662 aa8.37□□□□□ -1.07
USP54-211ENST00000474929 STRIP2Q9ULQ0 834 aa8.37□□□□□ -1.07
USP54-211ENST00000474929 STYXL1Q9Y6J8 313 aa8.37□□□□□ -1.07
USP54-211ENST00000474929 EDDM13A0A1B0GTR0 161 aa8.36□□□□□ -1.07
USP54-211ENST00000474929 SFI1A8K8P3 1242 aa8.36□□□□□ -1.07
USP54-211ENST00000474929 E9PMD0 336 aa8.36□□□□□ -1.07
USP54-211ENST00000474929 JAK2O60674 1132 aa8.36□□□□□ -1.07
USP54-211ENST00000474929 SIN3BO75182 1162 aa8.36□□□□□ -1.07
USP54-211ENST00000474929 CSF2P04141 144 aa8.36□□□□□ -1.07
USP54-211ENST00000474929 PDGFRBP09619 1106 aa8.36□□□□□ -1.07
USP54-211ENST00000474929 RALAP11233 206 aa8.36□□□□□ -1.07
USP54-211ENST00000474929 PTPN1P18031 435 aaKnown RBP8.36□□□□□ -1.07
USP54-211ENST00000474929 HNRNPA2B1P22626 353 aaKnown RBP8.36□□□□□ -1.07
USP54-211ENST00000474929 LMO2P25791 158 aa8.36□□□□□ -1.07
USP54-211ENST00000474929 HOXD9P28356 352 aaPredicted RBP8.36□□□□□ -1.07
USP54-211ENST00000474929 GNL1P36915 607 aaPredicted RBP8.36□□□□□ -1.07
USP54-211ENST00000474929 PSMD8P48556 350 aa8.36□□□□□ -1.07
USP54-211ENST00000474929 PER3P56645 1201 aa8.36□□□□□ -1.07
USP54-211ENST00000474929 PERM1Q5SV97 790 aa8.36□□□□□ -1.07
USP54-211ENST00000474929 FAM46CQ5VWP2 391 aa8.36□□□□□ -1.07
USP54-211ENST00000474929 CEP135Q66GS9 1140 aa8.36□□□□□ -1.07
USP54-211ENST00000474929 NEK5Q6P3R8 708 aa8.36□□□□□ -1.07
USP54-211ENST00000474929 FAM217AQ8IXS0 508 aa8.36□□□□□ -1.07
USP54-211ENST00000474929 MMP21Q8N119 569 aa8.36□□□□□ -1.07
USP54-211ENST00000474929 SCAMP5Q8TAC9 235 aa8.36□□□□□ -1.07
USP54-211ENST00000474929 PTPRN2Q92932 1015 aa8.36□□□□□ -1.07
USP54-211ENST00000474929 USP7Q93009 1102 aa8.36□□□□□ -1.07
USP54-211ENST00000474929 FAM131CQ96AQ9 280 aa8.36□□□□□ -1.07
USP54-211ENST00000474929 HPDLQ96IR7 371 aa8.36□□□□□ -1.07
USP54-211ENST00000474929 ABCB8Q9NUT2 735 aa8.36□□□□□ -1.07
USP54-211ENST00000474929 FOXJ2Q9P0K8 574 aa8.36□□□□□ -1.07
USP54-211ENST00000474929 SPASTQ9UBP0 616 aa8.36□□□□□ -1.07
USP54-211ENST00000474929 MAP4K5Q9Y4K4 846 aa8.36□□□□□ -1.07
USP54-211ENST00000474929 PCDHA5Q9Y5H7 936 aa8.36□□□□□ -1.07
USP54-211ENST00000474929 RP1P56715 2156 aa8.36□□□□□ -1.07
USP54-211ENST00000474929 ZNF106Q9H2Y7 1883 aaKnown RBP8.36□□□□□ -1.07
USP54-211ENST00000474929 NYNRINQ9P2P1 1898 aaKnown RBP8.35□□□□□ -1.07
USP54-211ENST00000474929 C9orf172C9J069 976 aa8.35□□□□□ -1.07
USP54-211ENST00000474929 DIAPH2O60879 1101 aa8.35□□□□□ -1.07
USP54-211ENST00000474929 NEBLO76041 1014 aa8.35□□□□□ -1.07
USP54-211ENST00000474929 LATS1O95835 1130 aa8.35□□□□□ -1.07
USP54-211ENST00000474929 TNNC2P02585 160 aa8.35□□□□□ -1.07
USP54-211ENST00000474929 RARGP13631 454 aa8.35□□□□□ -1.07
USP54-211ENST00000474929 HGFP14210 728 aa8.35□□□□□ -1.07
USP54-211ENST00000474929 PRF1P14222 555 aa8.35□□□□□ -1.07
USP54-211ENST00000474929 LIFP15018 202 aa8.35□□□□□ -1.07
Retrieved 100 of 20,778 RNA–protein pairs in 36.3 ms