RNA–Protein interactions for RNA: ENST00000471309.1

VPS52-216, Transcript of VPS52, GARP complex subunit, humanhuman

TSL 2

Gene VPS52, Length 505 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS52-216ENST00000471309 CCNYQ8ND76 341 aa9.64□□□□□ -0.87
VPS52-216ENST00000471309 DPF3Q92784 378 aa9.64□□□□□ -0.87
VPS52-216ENST00000471309 EXOC4Q96A65 974 aa9.64□□□□□ -0.87
VPS52-216ENST00000471309 TTC25Q96NG3 672 aa9.64□□□□□ -0.87
VPS52-216ENST00000471309 TSGA13Q96PP4 275 aa9.64□□□□□ -0.87
VPS52-216ENST00000471309 VAT1Q99536 393 aa9.64□□□□□ -0.87
VPS52-216ENST00000471309 SEMA4AQ9H3S1 761 aa9.64□□□□□ -0.87
VPS52-216ENST00000471309 RETREG1Q9H6L5 497 aa9.64□□□□□ -0.87
VPS52-216ENST00000471309 IL21Q9HBE4 155 aa9.64□□□□□ -0.87
VPS52-216ENST00000471309 ZNF334Q9HCZ1 680 aaPredicted RBP9.64□□□□□ -0.87
VPS52-216ENST00000471309 ALG13Q9NP73 1137 aaKnown RBP9.64□□□□□ -0.87
VPS52-216ENST00000471309 EIF2B3Q9NR50 452 aaKnown RBP9.64□□□□□ -0.87
VPS52-216ENST00000471309 TMEM248Q9NWD8 314 aa9.64□□□□□ -0.87
VPS52-216ENST00000471309 NINJ2Q9NZG7 142 aa9.64□□□□□ -0.87
VPS52-216ENST00000471309 VANGL2Q9ULK5 521 aa9.64□□□□□ -0.87
VPS52-216ENST00000471309 TCRBV7S3A2A0A539 114 aa9.63□□□□□ -0.87
VPS52-216ENST00000471309 C2orf78A6NCI8 922 aa9.63□□□□□ -0.87
VPS52-216ENST00000471309 GOLGA8KD6RF30 607 aa9.63□□□□□ -0.87
VPS52-216ENST00000471309 ACSL4O60488 711 aa9.63□□□□□ -0.87
VPS52-216ENST00000471309 LPXNO60711 386 aa9.63□□□□□ -0.87
VPS52-216ENST00000471309 METTL18O95568 372 aa9.63□□□□□ -0.87
VPS52-216ENST00000471309 TTC4O95801 387 aa9.63□□□□□ -0.87
VPS52-216ENST00000471309 HMBSP08397 361 aa9.63□□□□□ -0.87
VPS52-216ENST00000471309 ABHD2P08910 425 aa9.63□□□□□ -0.87
VPS52-216ENST00000471309 SPATA31D3P0C874 917 aa9.63□□□□□ -0.87
VPS52-216ENST00000471309 PFKLP17858 780 aa9.63□□□□□ -0.87
VPS52-216ENST00000471309 TACR2P21452 398 aa9.63□□□□□ -0.87
VPS52-216ENST00000471309 PTPN3P26045 913 aa9.63□□□□□ -0.87
VPS52-216ENST00000471309 FDFT1P37268 417 aa9.63□□□□□ -0.87
VPS52-216ENST00000471309 SLC11A2P49281 568 aa9.63□□□□□ -0.87
VPS52-216ENST00000471309 HARS2P49590 506 aaKnown RBP9.63□□□□□ -0.87
VPS52-216ENST00000471309 KCNQ1P51787 676 aa9.63□□□□□ -0.87
VPS52-216ENST00000471309 CLCN4P51793 760 aa9.63□□□□□ -0.87
VPS52-216ENST00000471309 NDST2P52849 883 aa9.63□□□□□ -0.87
VPS52-216ENST00000471309 FAM133BQ5BKY9 247 aaKnown RBP9.63□□□□□ -0.87
VPS52-216ENST00000471309 C9orf50Q5SZB4 431 aa9.63□□□□□ -0.87
VPS52-216ENST00000471309 CEP85LQ5SZL2 805 aa9.63□□□□□ -0.87
VPS52-216ENST00000471309 RAP1GAP2Q684P5 730 aa9.63□□□□□ -0.87
VPS52-216ENST00000471309 NADSYN1Q6IA69 706 aa9.63□□□□□ -0.87
VPS52-216ENST00000471309 PDE12Q6L8Q7 609 aaKnown RBP9.63□□□□□ -0.87
VPS52-216ENST00000471309 FBXL22Q6P050 247 aa9.63□□□□□ -0.87
VPS52-216ENST00000471309 SPATA31D4Q6ZUB0 917 aa9.63□□□□□ -0.87
VPS52-216ENST00000471309 CROCCP2Q86T23 111 aa9.63□□□□□ -0.87
VPS52-216ENST00000471309 CHSY1Q86X52 802 aa9.63□□□□□ -0.87
VPS52-216ENST00000471309 PDIK1LQ8N165 341 aa9.63□□□□□ -0.87
VPS52-216ENST00000471309 ELMOD1Q8N336 334 aa9.63□□□□□ -0.87
VPS52-216ENST00000471309 TAB3Q8N5C8 712 aaPredicted RBP9.63□□□□□ -0.87
VPS52-216ENST00000471309 ATPAF2Q8N5M1 289 aa9.63□□□□□ -0.87
VPS52-216ENST00000471309 NETO2Q8NC67 525 aa9.63□□□□□ -0.87
VPS52-216ENST00000471309 MCUQ8NE86 351 aa9.63□□□□□ -0.87
VPS52-216ENST00000471309 LRRN4Q8WUT4 740 aa9.63□□□□□ -0.87
VPS52-216ENST00000471309 FATE1Q969F0 183 aa9.63□□□□□ -0.87
VPS52-216ENST00000471309 CELF6Q96J87 481 aaKnown RBP9.63□□□□□ -0.87
VPS52-216ENST00000471309 PWWP2AQ96N64 755 aa9.63□□□□□ -0.87
VPS52-216ENST00000471309 TMEM109Q9BVC6 243 aa9.63□□□□□ -0.87
VPS52-216ENST00000471309 KLF16Q9BXK1 252 aaPredicted RBP9.63□□□□□ -0.87
VPS52-216ENST00000471309 LRRC3Q9BY71 257 aa9.63□□□□□ -0.87
VPS52-216ENST00000471309 SAYSD1Q9NPB0 183 aa9.63□□□□□ -0.87
VPS52-216ENST00000471309 IGSF9Q9P2J2 1179 aa9.63□□□□□ -0.87
VPS52-216ENST00000471309 ZNF212Q9UDV6 495 aa9.63□□□□□ -0.87
VPS52-216ENST00000471309 TRHDEQ9UKU6 1024 aa9.63□□□□□ -0.87
VPS52-216ENST00000471309 PCDHA11Q9Y5I1 949 aa9.63□□□□□ -0.87
VPS52-216ENST00000471309 NYNRINQ9P2P1 1898 aaKnown RBP9.63□□□□□ -0.87
VPS52-216ENST00000471309 DOCK4Q8N1I0 1966 aa9.63□□□□□ -0.87
VPS52-216ENST00000471309 HELZP42694 1942 aaKnown RBP9.62□□□□□ -0.87
VPS52-216ENST00000471309 DENND4CQ5VZ89 1909 aa9.62□□□□□ -0.87
VPS52-216ENST00000471309 GOLGA6L10A6NI86 522 aa9.62□□□□□ -0.87
VPS52-216ENST00000471309 F5H5T6 163 aa9.62□□□□□ -0.87
VPS52-216ENST00000471309 KCNK1O00180 336 aa9.62□□□□□ -0.87
VPS52-216ENST00000471309 DFFAO00273 331 aa9.62□□□□□ -0.87
VPS52-216ENST00000471309 ALOX15BO15296 676 aa9.62□□□□□ -0.87
VPS52-216ENST00000471309 GRM6O15303 877 aa9.62□□□□□ -0.87
VPS52-216ENST00000471309 MAFKO60675 156 aa9.62□□□□□ -0.87
VPS52-216ENST00000471309 RNF40O75150 1001 aa9.62□□□□□ -0.87
VPS52-216ENST00000471309 STC2O76061 302 aa9.62□□□□□ -0.87
VPS52-216ENST00000471309 ARHGEF15O94989 841 aa9.62□□□□□ -0.87
VPS52-216ENST00000471309 FGF19O95750 216 aa9.62□□□□□ -0.87
VPS52-216ENST00000471309 CA3P07451 260 aa9.62□□□□□ -0.87
VPS52-216ENST00000471309 TSHRP16473 764 aa9.62□□□□□ -0.87
VPS52-216ENST00000471309 CCNCP24863 283 aa9.62□□□□□ -0.87
VPS52-216ENST00000471309 CDC25CP30307 473 aa9.62□□□□□ -0.87
VPS52-216ENST00000471309 CORO1AP31146 461 aaKnown RBP9.62□□□□□ -0.87
VPS52-216ENST00000471309 HOXA9P31269 272 aa9.62□□□□□ -0.87
VPS52-216ENST00000471309 MAGEA4P43358 317 aa9.62□□□□□ -0.87
VPS52-216ENST00000471309 MAGEA10P43363 369 aaPredicted RBP9.62□□□□□ -0.87
VPS52-216ENST00000471309 MAPKAPK2P49137 400 aa9.62□□□□□ -0.87
VPS52-216ENST00000471309 IRAK1P51617 712 aa9.62□□□□□ -0.87
VPS52-216ENST00000471309 IFI35P80217 286 aaPredicted RBP9.62□□□□□ -0.87
VPS52-216ENST00000471309 CDK16Q00536 496 aa9.62□□□□□ -0.87
VPS52-216ENST00000471309 GAD2Q05329 585 aa9.62□□□□□ -0.87
VPS52-216ENST00000471309 IFFO1Q0D2I5 559 aa9.62□□□□□ -0.87
VPS52-216ENST00000471309 PDIA2Q13087 525 aaKnown RBP9.62□□□□□ -0.87
VPS52-216ENST00000471309 ZBTB17Q13105 803 aa9.62□□□□□ -0.87
VPS52-216ENST00000471309 CAMK1Q14012 370 aa9.62□□□□□ -0.87
VPS52-216ENST00000471309 SLC29A2Q14542 456 aa9.62□□□□□ -0.87
VPS52-216ENST00000471309 PARP6Q2NL67 630 aa9.62□□□□□ -0.87
VPS52-216ENST00000471309 PARP15Q460N3 678 aa9.62□□□□□ -0.87
VPS52-216ENST00000471309 ALFQ53S48 1182 aa9.62□□□□□ -0.87
VPS52-216ENST00000471309 PPM1LQ5SGD2 360 aa9.62□□□□□ -0.87
VPS52-216ENST00000471309 UBAP2Q5T6F2 1119 aaKnown RBP9.62□□□□□ -0.87
Retrieved 100 of 20,778 RNA–protein pairs in 57.1 ms