RNA–Protein interactions for RNA: ENST00000453453.1

SNX17-204, Transcript of sorting nexin 17, humanhuman

TSL 1 (best)

Gene SNX17, Length 1,638 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX17-204ENST00000453453 KLHL14Q9P2G3 628 aa16.33■□□□□ 0.2
SNX17-204ENST00000453453 PDE4DIPQ5VU43 2346 aa16.32■□□□□ 0.2
SNX17-204ENST00000453453 TMEM120BA0PK00 339 aa16.32■□□□□ 0.2
SNX17-204ENST00000453453 TCP11X1B4DZS4 312 aa16.32■□□□□ 0.2
SNX17-204ENST00000453453 TLR5O60602 858 aa16.32■□□□□ 0.2
SNX17-204ENST00000453453 XYLBO75191 536 aa16.32■□□□□ 0.2
SNX17-204ENST00000453453 FGF19O95750 216 aa16.32■□□□□ 0.2
SNX17-204ENST00000453453 IGLV3-25P01717 112 aa16.32■□□□□ 0.2
SNX17-204ENST00000453453 HNRNPA1P09651 372 aaKnown RBP eCLIP16.32■□□□□ 0.2
SNX17-204ENST00000453453 SLC2A3P11169 496 aa16.32■□□□□ 0.2
SNX17-204ENST00000453453 KDELR1P24390 212 aa16.32■□□□□ 0.2
SNX17-204ENST00000453453 HOXA9P31269 272 aa16.32■□□□□ 0.2
SNX17-204ENST00000453453 CXCR3P49682 368 aa16.32■□□□□ 0.2
SNX17-204ENST00000453453 PGFP49763 221 aa16.32■□□□□ 0.2
SNX17-204ENST00000453453 KPNA1P52294 538 aaPredicted RBP16.32■□□□□ 0.2
SNX17-204ENST00000453453 SLC18A1P54219 525 aa16.32■□□□□ 0.2
SNX17-204ENST00000453453 EFEMP1Q12805 493 aa16.32■□□□□ 0.2
SNX17-204ENST00000453453 NR1H3Q13133 447 aa16.32■□□□□ 0.2
SNX17-204ENST00000453453 BRMS1LQ5PSV4 323 aa16.32■□□□□ 0.2
SNX17-204ENST00000453453 HECTD3Q5T447 861 aa16.32■□□□□ 0.2
SNX17-204ENST00000453453 CAPRIN2Q6IMN6 1127 aaKnown RBP16.32■□□□□ 0.2
SNX17-204ENST00000453453 TTC27Q6P3X3 843 aa16.32■□□□□ 0.2
SNX17-204ENST00000453453 SPOCD1Q6ZMY3 1216 aa16.32■□□□□ 0.2
SNX17-204ENST00000453453 RELL1Q8IUW5 271 aa16.32■□□□□ 0.2
SNX17-204ENST00000453453 CCDC185Q8N715 623 aa16.32■□□□□ 0.2
SNX17-204ENST00000453453 BBOF1Q8ND07 529 aa16.32■□□□□ 0.2
SNX17-204ENST00000453453 GRK7Q8WTQ7 553 aa16.32■□□□□ 0.2
SNX17-204ENST00000453453 SLC22A17Q8WUG5 538 aa16.32■□□□□ 0.2
SNX17-204ENST00000453453 INPP5DQ92835 1189 aa16.32■□□□□ 0.2
SNX17-204ENST00000453453 CASP10Q92851 521 aa16.32■□□□□ 0.2
SNX17-204ENST00000453453 CALN1Q9BXU9 219 aa16.32■□□□□ 0.2
SNX17-204ENST00000453453 OSBPL8Q9BZF1 889 aa16.32■□□□□ 0.2
SNX17-204ENST00000453453 DHX35Q9H5Z1 703 aaKnown RBP16.32■□□□□ 0.2
SNX17-204ENST00000453453 ASAH2Q9NR71 780 aa16.32■□□□□ 0.2
SNX17-204ENST00000453453 FZD10Q9ULW2 581 aa16.32■□□□□ 0.2
SNX17-204ENST00000453453 ZNF840PA6NDX5 716 aa16.31■□□□□ 0.2
SNX17-204ENST00000453453 CCL16O15467 120 aa16.31■□□□□ 0.2
SNX17-204ENST00000453453 HNRNPCL1O60812 293 aaKnown RBP16.31■□□□□ 0.2
SNX17-204ENST00000453453 EPCAMP16422 314 aa16.31■□□□□ 0.2
SNX17-204ENST00000453453 CCR1P32246 355 aa16.31■□□□□ 0.2
SNX17-204ENST00000453453 PTPN7P35236 360 aa16.31■□□□□ 0.2
SNX17-204ENST00000453453 ATP5C1P36542 298 aaKnown RBP16.31■□□□□ 0.2
SNX17-204ENST00000453453 TUBP50607 506 aa16.31■□□□□ 0.2
SNX17-204ENST00000453453 TFDP3Q5H9I0 405 aa16.31■□□□□ 0.2
SNX17-204ENST00000453453 MFSD7Q6UXD7 560 aa16.31■□□□□ 0.2
SNX17-204ENST00000453453 RGS9BPQ6ZS82 235 aa16.31■□□□□ 0.2
SNX17-204ENST00000453453 CYP4V2Q6ZWL3 525 aaPredicted RBP16.31■□□□□ 0.2
SNX17-204ENST00000453453 RBM23Q86U06 439 aaKnown RBP16.31■□□□□ 0.2
SNX17-204ENST00000453453 THOC1Q96FV9 657 aaKnown RBP16.31■□□□□ 0.2
SNX17-204ENST00000453453 CDCA3Q99618 268 aaPredicted RBP16.31■□□□□ 0.2
SNX17-204ENST00000453453 LRMDAQ9H2I8 198 aa16.31■□□□□ 0.2
SNX17-204ENST00000453453 CDC42EP4Q9H3Q1 356 aaKnown RBP16.31■□□□□ 0.2
SNX17-204ENST00000453453 WDR6Q9NNW5 1121 aaKnown RBP16.31■□□□□ 0.2
SNX17-204ENST00000453453 FGFR1OP2Q9NVK5 253 aa16.31■□□□□ 0.2
SNX17-204ENST00000453453 GPATCH2LQ9NWQ4 482 aa16.31■□□□□ 0.2
SNX17-204ENST00000453453 MARCH2Q9P0N8 246 aa16.31■□□□□ 0.2
SNX17-204ENST00000453453 SFMBT1Q9UHJ3 866 aa16.31■□□□□ 0.2
SNX17-204ENST00000453453 DNMT3LQ9UJW3 386 aa16.31■□□□□ 0.2
SNX17-204ENST00000453453 NUDT5Q9UKK9 219 aa16.31■□□□□ 0.2
SNX17-204ENST00000453453 TLR6Q9Y2C9 796 aa16.31■□□□□ 0.2
SNX17-204ENST00000453453 OBSL1O75147 1896 aa16.31■□□□□ 0.2
SNX17-204ENST00000453453 DIAPH2O60879 1101 aa16.3■□□□□ 0.2
SNX17-204ENST00000453453 TJP3O95049 919 aa16.3■□□□□ 0.2
SNX17-204ENST00000453453 UNC5CO95185 931 aa16.3■□□□□ 0.2
SNX17-204ENST00000453453 APOEP02649 317 aa16.3■□□□□ 0.2
SNX17-204ENST00000453453 KRT16P08779 473 aa16.3■□□□□ 0.2
SNX17-204ENST00000453453 CDC25CP30307 473 aa16.3■□□□□ 0.2
SNX17-204ENST00000453453 ADRA1BP35368 520 aa16.3■□□□□ 0.2
SNX17-204ENST00000453453 IFNAR2P48551 515 aa16.3■□□□□ 0.2
SNX17-204ENST00000453453 TBX4P57082 545 aa16.3■□□□□ 0.2
SNX17-204ENST00000453453 SCAPQ12770 1279 aa16.3■□□□□ 0.2
SNX17-204ENST00000453453 PTK6Q13882 451 aa16.3■□□□□ 0.2
SNX17-204ENST00000453453 PPP2R5DQ14738 602 aa16.3■□□□□ 0.2
SNX17-204ENST00000453453 SIX1Q15475 284 aaPredicted RBP16.3■□□□□ 0.2
SNX17-204ENST00000453453 DUSP6Q16828 381 aa16.3■□□□□ 0.2
SNX17-204ENST00000453453 AADACL2Q6P093 401 aa16.3■□□□□ 0.2
SNX17-204ENST00000453453 KLHDC10Q6PID8 442 aa16.3■□□□□ 0.2
SNX17-204ENST00000453453 VSIG1Q86XK7 387 aa16.3■□□□□ 0.2
SNX17-204ENST00000453453 CCDC105Q8IYK2 499 aa16.3■□□□□ 0.2
SNX17-204ENST00000453453 MRPL38Q96DV4 380 aaKnown RBP16.3■□□□□ 0.2
SNX17-204ENST00000453453 MAK16Q9BXY0 300 aaKnown RBP16.3■□□□□ 0.2
SNX17-204ENST00000453453 CCSER2Q9H7U1 834 aa16.3■□□□□ 0.2
SNX17-204ENST00000453453 SPATS2LQ9NUQ6 558 aaKnown RBP16.3■□□□□ 0.2
SNX17-204ENST00000453453 ZDHHC7Q9NXF8 308 aa16.3■□□□□ 0.2
SNX17-204ENST00000453453 EFR3BQ9Y2G0 817 aa16.3■□□□□ 0.2
SNX17-204ENST00000453453 ANAPC1Q9H1A4 1944 aa16.3■□□□□ 0.2
SNX17-204ENST00000453453 A6NHS1 94 aa16.3■□□□□ 0.2
SNX17-204ENST00000453453 ZNF487B1APH4 448 aa16.3■□□□□ 0.2
SNX17-204ENST00000453453 PER2O15055 1255 aa16.3■□□□□ 0.2
SNX17-204ENST00000453453 MSI1O43347 362 aaKnown RBP16.3■□□□□ 0.2
SNX17-204ENST00000453453 TTC4O95801 387 aa16.3■□□□□ 0.2
SNX17-204ENST00000453453 ABHD2P08910 425 aa16.3■□□□□ 0.2
SNX17-204ENST00000453453 ARL4AP40617 200 aa16.3■□□□□ 0.2
SNX17-204ENST00000453453 CDKN2BP42772 138 aa16.3■□□□□ 0.2
SNX17-204ENST00000453453 NRIP1P48552 1158 aa16.3■□□□□ 0.2
SNX17-204ENST00000453453 MTA1Q13330 715 aa16.3■□□□□ 0.2
SNX17-204ENST00000453453 TFDP2Q14188 446 aa16.3■□□□□ 0.2
SNX17-204ENST00000453453 TRIP4Q15650 581 aaPredicted RBP16.3■□□□□ 0.2
SNX17-204ENST00000453453 DPYSL2Q16555 572 aa16.3■□□□□ 0.2
SNX17-204ENST00000453453 ZC3H12AQ5D1E8 599 aaKnown RBP16.3■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 35 ms