RNA–Protein interactions for RNA: ENST00000453046.5

SQSTM1-204, Transcript of sequestosome 1, humanhuman

TSL 4

Gene SQSTM1, Length 572 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-204ENST00000453046 TLR6Q9Y2C9 796 aa18.65■□□□□ 0.58
SQSTM1-204ENST00000453046 ADGRG1Q9Y653 693 aa18.65■□□□□ 0.58
SQSTM1-204ENST00000453046 ZSCAN12O43309 604 aa18.64■□□□□ 0.57
SQSTM1-204ENST00000453046 MOCS2O96007 188 aaPredicted RBP18.64■□□□□ 0.57
SQSTM1-204ENST00000453046 ATP5BP06576 529 aaKnown RBP18.64■□□□□ 0.57
SQSTM1-204ENST00000453046 HLA-EP13747 358 aa18.64■□□□□ 0.57
SQSTM1-204ENST00000453046 ENGP17813 658 aa18.64■□□□□ 0.57
SQSTM1-204ENST00000453046 PRKCHP24723 683 aa18.64■□□□□ 0.57
SQSTM1-204ENST00000453046 SLC6A4P31645 630 aa18.64■□□□□ 0.57
SQSTM1-204ENST00000453046 NOVA1P51513 510 aaKnown RBP18.64■□□□□ 0.57
SQSTM1-204ENST00000453046 KRT83P78385 493 aa18.64■□□□□ 0.57
SQSTM1-204ENST00000453046 CDR2Q01850 454 aa18.64■□□□□ 0.57
SQSTM1-204ENST00000453046 GFPT1Q06210 699 aaPredicted RBP18.64■□□□□ 0.57
SQSTM1-204ENST00000453046 NNTQ13423 1086 aa18.64■□□□□ 0.57
SQSTM1-204ENST00000453046 FAM133BQ5BKY9 247 aaKnown RBP18.64■□□□□ 0.57
SQSTM1-204ENST00000453046 PEAR1Q5VY43 1037 aaPredicted RBP18.64■□□□□ 0.57
SQSTM1-204ENST00000453046 PSAPL1Q6NUJ1 521 aa18.64■□□□□ 0.57
SQSTM1-204ENST00000453046 NOP9Q86U38 636 aaKnown RBP18.64■□□□□ 0.57
SQSTM1-204ENST00000453046 CACUL1Q86Y37 369 aa18.64■□□□□ 0.57
SQSTM1-204ENST00000453046 SLC41A1Q8IVJ1 513 aa18.64■□□□□ 0.57
SQSTM1-204ENST00000453046 MFN1Q8IWA4 741 aa18.64■□□□□ 0.57
SQSTM1-204ENST00000453046 TXLNBQ8N3L3 684 aa18.64■□□□□ 0.57
SQSTM1-204ENST00000453046 HJURPQ8NCD3 748 aaPredicted RBP18.64■□□□□ 0.57
SQSTM1-204ENST00000453046 CYB5D2Q8WUJ1 264 aa18.64■□□□□ 0.57
SQSTM1-204ENST00000453046 FCRL2Q96LA5 508 aaPredicted RBP18.64■□□□□ 0.57
SQSTM1-204ENST00000453046 AGPAT1Q99943 283 aa18.64■□□□□ 0.57
SQSTM1-204ENST00000453046 DESI2Q9BSY9 194 aa18.64■□□□□ 0.57
SQSTM1-204ENST00000453046 GTPBP2Q9BX10 602 aaKnown RBP18.64■□□□□ 0.57
SQSTM1-204ENST00000453046 POPDC2Q9HBU9 364 aa18.64■□□□□ 0.57
SQSTM1-204ENST00000453046 ITM2CQ9NQX7 267 aa18.64■□□□□ 0.57
SQSTM1-204ENST00000453046 CYTH4Q9UIA0 394 aa18.64■□□□□ 0.57
SQSTM1-204ENST00000453046 NENFQ9UMX5 172 aa18.64■□□□□ 0.57
SQSTM1-204ENST00000453046 PPP2R2CQ9Y2T4 447 aa18.64■□□□□ 0.57
SQSTM1-204ENST00000453046 GOLGA6L9A6NEM1 432 aa18.63■□□□□ 0.57
SQSTM1-204ENST00000453046 ESPNB1AK53 854 aa18.63■□□□□ 0.57
SQSTM1-204ENST00000453046 PAPSS1O43252 624 aaPredicted RBP18.63■□□□□ 0.57
SQSTM1-204ENST00000453046 APOEP02649 317 aa18.63■□□□□ 0.57
SQSTM1-204ENST00000453046 POLR2EP19388 210 aaKnown RBP18.63■□□□□ 0.57
SQSTM1-204ENST00000453046 YWHAZP63104 245 aaKnown RBP18.63■□□□□ 0.57
SQSTM1-204ENST00000453046 PDCLQ13371 301 aa18.63■□□□□ 0.57
SQSTM1-204ENST00000453046 WDR45BQ5MNZ6 344 aa18.63■□□□□ 0.57
SQSTM1-204ENST00000453046 SYPL2Q5VXT5 272 aa18.63■□□□□ 0.57
SQSTM1-204ENST00000453046 MBLAC2Q68D91 279 aa18.63■□□□□ 0.57
SQSTM1-204ENST00000453046 TRIM72Q6ZMU5 477 aa18.63■□□□□ 0.57
SQSTM1-204ENST00000453046 BEND5Q7L4P6 421 aa18.63■□□□□ 0.57
SQSTM1-204ENST00000453046 TMEM110Q86TL2 294 aa18.63■□□□□ 0.57
SQSTM1-204ENST00000453046 TAC4Q86UU9 113 aa18.63■□□□□ 0.57
SQSTM1-204ENST00000453046 ADIPOR2Q86V24 386 aa18.63■□□□□ 0.57
SQSTM1-204ENST00000453046 CCAR2Q8N163 923 aaKnown RBP18.63■□□□□ 0.57
SQSTM1-204ENST00000453046 DDX51Q8N8A6 666 aaKnown RBP eCLIP18.63■□□□□ 0.571e-7■□□□□ 10.8
SQSTM1-204ENST00000453046 ACRBPQ8NEB7 543 aa18.63■□□□□ 0.57
SQSTM1-204ENST00000453046 SLC20A1Q8WUM9 679 aa18.63■□□□□ 0.57
SQSTM1-204ENST00000453046 TOE1Q96GM8 510 aaKnown RBP18.63■□□□□ 0.57
SQSTM1-204ENST00000453046 ZNF419Q96HQ0 510 aaPredicted RBP18.63■□□□□ 0.57
SQSTM1-204ENST00000453046 CNTNAP3BQ96NU0 1288 aa18.63■□□□□ 0.57
SQSTM1-204ENST00000453046 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP18.63■□□□□ 0.578e-12■■□□□ 13.9
SQSTM1-204ENST00000453046 CNTNAP3Q9BZ76 1288 aa18.63■□□□□ 0.57
SQSTM1-204ENST00000453046 SPTLC3Q9NUV7 552 aa18.63■□□□□ 0.57
SQSTM1-204ENST00000453046 WSB2Q9NYS7 404 aaPredicted RBP18.63■□□□□ 0.57
SQSTM1-204ENST00000453046 USP36Q9P275 1121 aaKnown RBP18.63■□□□□ 0.57
SQSTM1-204ENST00000453046 A0A087X0T9 212 aa18.62■□□□□ 0.57
SQSTM1-204ENST00000453046 MEI4A8MW99 385 aa18.62■□□□□ 0.57
SQSTM1-204ENST00000453046 DDX3XO00571 662 aaKnown RBP eCLIP18.62■□□□□ 0.573e-52■■■□□ 17.8
SQSTM1-204ENST00000453046 SERPINF2P08697 491 aa18.62■□□□□ 0.57
SQSTM1-204ENST00000453046 DLDP09622 509 aaKnown RBP18.62■□□□□ 0.57
SQSTM1-204ENST00000453046 FAM228BP0C875 321 aa18.62■□□□□ 0.57
SQSTM1-204ENST00000453046 GNSP15586 552 aa18.62■□□□□ 0.57
SQSTM1-204ENST00000453046 OXTRP30559 389 aa18.62■□□□□ 0.57
SQSTM1-204ENST00000453046 CD70P32970 193 aa18.62■□□□□ 0.57
SQSTM1-204ENST00000453046 TPMTP51580 245 aa18.62■□□□□ 0.57
SQSTM1-204ENST00000453046 COPAP53621 1224 aa18.62■□□□□ 0.57
SQSTM1-204ENST00000453046 FMO1Q01740 532 aa18.62■□□□□ 0.57
SQSTM1-204ENST00000453046 SH3PXD2AQ5TCZ1 1133 aa18.62■□□□□ 0.57
SQSTM1-204ENST00000453046 NADSYN1Q6IA69 706 aa18.62■□□□□ 0.57
SQSTM1-204ENST00000453046 PASD1Q8IV76 773 aa18.62■□□□□ 0.57
SQSTM1-204ENST00000453046 CARNMT1Q8N4J0 409 aa18.62■□□□□ 0.57
SQSTM1-204ENST00000453046 ZNF366Q8N895 744 aa18.62■□□□□ 0.57
SQSTM1-204ENST00000453046 OR2T3Q8NH03 318 aa18.62■□□□□ 0.57
SQSTM1-204ENST00000453046 SLC30A5Q8TAD4 765 aa18.62■□□□□ 0.57
SQSTM1-204ENST00000453046 SLC39A13Q96H72 371 aa18.62■□□□□ 0.57
SQSTM1-204ENST00000453046 NOX5Q96PH1 765 aa18.62■□□□□ 0.57
SQSTM1-204ENST00000453046 GPR174Q9BXC1 333 aa18.62■□□□□ 0.57
SQSTM1-204ENST00000453046 FSCN3Q9NQT6 498 aa18.62■□□□□ 0.57
SQSTM1-204ENST00000453046 TJP2Q9UDY2 1190 aa18.62■□□□□ 0.57
SQSTM1-204ENST00000453046 SUSD2Q9UGT4 822 aa18.62■□□□□ 0.57
SQSTM1-204ENST00000453046 ADAMTS1Q9UHI8 967 aa18.62■□□□□ 0.57
SQSTM1-204ENST00000453046 REXO2Q9Y3B8 237 aaKnown RBP18.62■□□□□ 0.57
SQSTM1-204ENST00000453046 TRUB2O95900 331 aaKnown RBP18.61■□□□□ 0.57
SQSTM1-204ENST00000453046 TNFAIP3P21580 790 aa18.61■□□□□ 0.57
SQSTM1-204ENST00000453046 VAV2P52735 878 aa18.61■□□□□ 0.57
SQSTM1-204ENST00000453046 ST8SIA6P61647 398 aa18.61■□□□□ 0.57
SQSTM1-204ENST00000453046 RPS24P62847 133 aaKnown RBP18.61■□□□□ 0.57
SQSTM1-204ENST00000453046 CDH18Q13634 790 aa18.61■□□□□ 0.57
SQSTM1-204ENST00000453046 DCAF6Q58WW2 860 aa18.61■□□□□ 0.57
SQSTM1-204ENST00000453046 MS4A13Q5J8X5 152 aa18.61■□□□□ 0.57
SQSTM1-204ENST00000453046 ZNF662Q6ZS27 426 aa18.61■□□□□ 0.57
SQSTM1-204ENST00000453046 KIAA0907Q7Z7F0 614 aaPredicted RBP18.61■□□□□ 0.57
SQSTM1-204ENST00000453046 FIBINQ8TAL6 211 aa18.61■□□□□ 0.57
SQSTM1-204ENST00000453046 WFDC5Q8TCV5 224 aa18.61■□□□□ 0.57
SQSTM1-204ENST00000453046 PPP1R13BQ96KQ4 1090 aa18.61■□□□□ 0.57
Retrieved 100 of 20,778 RNA–protein pairs in 48.1 ms