RNA–Protein interactions for RNA: ENST00000429035.1

SDC1-204, Transcript of syndecan 1, humanhuman

TSL 3

Gene SDC1, Length 646 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-204ENST00000429035 SYPL2Q5VXT5 272 aa15.01□□□□□ -0.01
SDC1-204ENST00000429035 GJB7Q6PEY0 223 aa15.01□□□□□ -0.01
SDC1-204ENST00000429035 GLRX5Q86SX6 157 aa15.01□□□□□ -0.01
SDC1-204ENST00000429035 PROSER1Q86XN7 944 aa15.01□□□□□ -0.01
SDC1-204ENST00000429035 PASD1Q8IV76 773 aa15.01□□□□□ -0.01
SDC1-204ENST00000429035 ATP6V0D2Q8N8Y2 350 aa15.01□□□□□ -0.01
SDC1-204ENST00000429035 MDM1Q8TC05 714 aa15.01□□□□□ -0.01
SDC1-204ENST00000429035 RNF34Q969K3 372 aa15.01□□□□□ -0.01
SDC1-204ENST00000429035 IGSF8Q969P0 613 aa15.01□□□□□ -0.01
SDC1-204ENST00000429035 AZIN2Q96A70 460 aa15.01□□□□□ -0.01
SDC1-204ENST00000429035 TTC17Q96AE7 1141 aa15.01□□□□□ -0.01
SDC1-204ENST00000429035 RPL10LQ96L21 214 aaKnown RBP15.01□□□□□ -0.01
SDC1-204ENST00000429035 MRGPRX3Q96LB0 322 aa15.01□□□□□ -0.01
SDC1-204ENST00000429035 CRACR2AQ9BSW2 395 aa15.01□□□□□ -0.01
SDC1-204ENST00000429035 ACE2Q9BYF1 805 aaPredicted RBP15.01□□□□□ -0.01
SDC1-204ENST00000429035 ACP6Q9NPH0 428 aa15.01□□□□□ -0.01
SDC1-204ENST00000429035 SCML1Q9UN30 329 aa15.01□□□□□ -0.01
SDC1-204ENST00000429035 PCDHGB2Q9Y5G2 931 aa15.01□□□□□ -0.01
SDC1-204ENST00000429035 GTF3C3Q9Y5Q9 886 aa15.01□□□□□ -0.01
SDC1-204ENST00000429035 ADAMTS20P59510 1910 aa15.01□□□□□ -0.01
SDC1-204ENST00000429035 EDDM13A0A1B0GTR0 161 aa15□□□□□ -0.01
SDC1-204ENST00000429035 FAM221BA6H8Z2 402 aa15□□□□□ -0.01
SDC1-204ENST00000429035 LRRC72A6NJI9 287 aa15□□□□□ -0.01
SDC1-204ENST00000429035 PAPSS1O43252 624 aaPredicted RBP15□□□□□ -0.01
SDC1-204ENST00000429035 TRUB2O95900 331 aaKnown RBP15□□□□□ -0.01
SDC1-204ENST00000429035 IGHV4-34P06331 123 aa15□□□□□ -0.01
SDC1-204ENST00000429035 SRPRAP08240 638 aaKnown RBP15□□□□□ -0.01
SDC1-204ENST00000429035 GRK6P43250 576 aa15□□□□□ -0.01
SDC1-204ENST00000429035 PITX1P78337 314 aaPredicted RBP15□□□□□ -0.01
SDC1-204ENST00000429035 ECT2LQ008S8 904 aa15□□□□□ -0.01
SDC1-204ENST00000429035 PDCLQ13371 301 aa15□□□□□ -0.01
SDC1-204ENST00000429035 KCNT1Q5JUK3 1230 aa15□□□□□ -0.01
SDC1-204ENST00000429035 C19orf48Q6RUI8 117 aa15□□□□□ -0.01
SDC1-204ENST00000429035 LRSAM1Q6UWE0 723 aa15□□□□□ -0.01
SDC1-204ENST00000429035 CCNI2Q6ZMN8 369 aaPredicted RBP15□□□□□ -0.01
SDC1-204ENST00000429035 USP30Q70CQ3 517 aa15□□□□□ -0.01
SDC1-204ENST00000429035 MARCH9Q86YJ5 346 aa15□□□□□ -0.01
SDC1-204ENST00000429035 APCDD1Q8J025 514 aa15□□□□□ -0.01
SDC1-204ENST00000429035 STK40Q8N2I9 435 aa15□□□□□ -0.01
SDC1-204ENST00000429035 BAHD1Q8TBE0 780 aaPredicted RBP15□□□□□ -0.01
SDC1-204ENST00000429035 SLC39A13Q96H72 371 aa15□□□□□ -0.01
SDC1-204ENST00000429035 LMLNQ96KR4 655 aa15□□□□□ -0.01
SDC1-204ENST00000429035 NEUROG2Q9H2A3 272 aa15□□□□□ -0.01
SDC1-204ENST00000429035 POPDC2Q9HBU9 364 aa15□□□□□ -0.01
SDC1-204ENST00000429035 KIAA1522Q9P206 1035 aaPredicted RBP15□□□□□ -0.01
SDC1-204ENST00000429035 FTSJ1Q9UET6 329 aa15□□□□□ -0.01
SDC1-204ENST00000429035 CYTH4Q9UIA0 394 aa15□□□□□ -0.01
SDC1-204ENST00000429035 ACACAQ13085 2346 aa14.99□□□□□ -0.01
SDC1-204ENST00000429035 TAF4O00268 1085 aa14.99□□□□□ -0.01
SDC1-204ENST00000429035 GRAP2O75791 330 aa14.99□□□□□ -0.01
SDC1-204ENST00000429035 FGFR1OPO95684 399 aaKnown RBP14.99□□□□□ -0.01
SDC1-204ENST00000429035 IL1BP01584 269 aa14.99□□□□□ -0.01
SDC1-204ENST00000429035 HOXB3P14651 431 aaPredicted RBP14.99□□□□□ -0.01
SDC1-204ENST00000429035 SLC8A1P32418 973 aa14.99□□□□□ -0.01
SDC1-204ENST00000429035 GGCXP38435 758 aa14.99□□□□□ -0.01
SDC1-204ENST00000429035 NNMTP40261 264 aa14.99□□□□□ -0.01
SDC1-204ENST00000429035 CTSKP43235 329 aa14.99□□□□□ -0.01
SDC1-204ENST00000429035 GALCP54803 685 aa14.99□□□□□ -0.01
SDC1-204ENST00000429035 PRAMEF14Q5SWL7 426 aa14.99□□□□□ -0.01
SDC1-204ENST00000429035 C9orf64Q5T6V5 341 aa14.99□□□□□ -0.01
SDC1-204ENST00000429035 GATAD2AQ86YP4 633 aa14.99□□□□□ -0.01
SDC1-204ENST00000429035 OR2T34Q8NGX1 318 aa14.99□□□□□ -0.01
SDC1-204ENST00000429035 OR14C36Q8NHC7 312 aa14.99□□□□□ -0.01
SDC1-204ENST00000429035 SKA1Q96BD8 255 aa14.99□□□□□ -0.01
SDC1-204ENST00000429035 BTN2A3PQ96KV6 586 aa14.99□□□□□ -0.01
SDC1-204ENST00000429035 MED15Q96RN5 788 aa14.99□□□□□ -0.01
SDC1-204ENST00000429035 OSGEPQ9NPF4 335 aa14.99□□□□□ -0.01
SDC1-204ENST00000429035 DDIT4Q9NX09 232 aa14.99□□□□□ -0.01
SDC1-204ENST00000429035 TOR4AQ9NXH8 423 aa14.99□□□□□ -0.01
SDC1-204ENST00000429035 SLC12A6Q9UHW9 1150 aa14.99□□□□□ -0.01
SDC1-204ENST00000429035 SLCO3A1Q9UIG8 710 aa14.99□□□□□ -0.01
SDC1-204ENST00000429035 ZFYVE26Q68DK2 2539 aa14.99□□□□□ -0.01
SDC1-204ENST00000429035 DOCK9Q9BZ29 2069 aa14.99□□□□□ -0.01
SDC1-204ENST00000429035 ITIH6Q6UXX5 1313 aa14.98□□□□□ -0.01
SDC1-204ENST00000429035 A0A1W2PPC4 97 aa14.98□□□□□ -0.01
SDC1-204ENST00000429035 TARSL2A2RTX5 802 aaKnown RBP14.98□□□□□ -0.01
SDC1-204ENST00000429035 FAM149AA5PLN7 773 aa14.98□□□□□ -0.01
SDC1-204ENST00000429035 GADD45BO75293 160 aaPredicted RBP14.98□□□□□ -0.01
SDC1-204ENST00000429035 VAV1P15498 845 aa14.98□□□□□ -0.01
SDC1-204ENST00000429035 ABCB4P21439 1286 aa14.98□□□□□ -0.01
SDC1-204ENST00000429035 MZF1P28698 734 aaPredicted RBP14.98□□□□□ -0.01
SDC1-204ENST00000429035 RACK1P63244 317 aaKnown RBP14.98□□□□□ -0.01
SDC1-204ENST00000429035 CDK17Q00537 523 aa14.98□□□□□ -0.01
SDC1-204ENST00000429035 CENPCQ03188 943 aa14.98□□□□□ -0.01
SDC1-204ENST00000429035 RABGAP1LQ5R372 815 aa14.98□□□□□ -0.01
SDC1-204ENST00000429035 SND1Q7KZF4 910 aaKnown RBP eCLIP14.98□□□□□ -0.013e-8■■□□□ 13.6
SDC1-204ENST00000429035 ELOA2Q8IYF1 753 aaPredicted RBP14.98□□□□□ -0.01
SDC1-204ENST00000429035 ZNF606Q8WXB4 792 aa14.98□□□□□ -0.01
SDC1-204ENST00000429035 RPRD1AQ96P16 312 aaPredicted RBP14.98□□□□□ -0.01
SDC1-204ENST00000429035 ORAI3Q9BRQ5 295 aa14.98□□□□□ -0.01
SDC1-204ENST00000429035 SLC4A5Q9BY07 1137 aa14.98□□□□□ -0.01
SDC1-204ENST00000429035 THAP9Q9H5L6 903 aa14.98□□□□□ -0.01
SDC1-204ENST00000429035 ZZEF1O43149 2961 aa14.97□□□□□ -0.01
SDC1-204ENST00000429035 TNFSF14O43557 240 aa14.97□□□□□ -0.01
SDC1-204ENST00000429035 BNIP3LO60238 219 aa14.97□□□□□ -0.01
SDC1-204ENST00000429035 ADH1BP00325 375 aa14.97□□□□□ -0.01
SDC1-204ENST00000429035 ITGAVP06756 1048 aa14.97□□□□□ -0.01
SDC1-204ENST00000429035 RPL34P49207 117 aaKnown RBP14.97□□□□□ -0.01
SDC1-204ENST00000429035 ADPRHP54922 357 aa14.97□□□□□ -0.01
SDC1-204ENST00000429035 MARSP56192 900 aaKnown RBP14.97□□□□□ -0.01
Retrieved 100 of 20,778 RNA–protein pairs in 67.8 ms