RNA–Protein interactions for RNA: ENST00000422991.1

COL7A1-202, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 5

Gene COL7A1, Length 597 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-202ENST00000422991 KDSRQ06136 332 aa17.49■□□□□ 0.39
COL7A1-202ENST00000422991 SIGLEC14Q08ET2 396 aa17.49■□□□□ 0.39
COL7A1-202ENST00000422991 MESP2Q0VG99 397 aa17.49■□□□□ 0.39
COL7A1-202ENST00000422991 CDH18Q13634 790 aa17.49■□□□□ 0.39
COL7A1-202ENST00000422991 DPYSQ14117 519 aa17.49■□□□□ 0.39
COL7A1-202ENST00000422991 DPYSL3Q14195 570 aa17.49■□□□□ 0.39
COL7A1-202ENST00000422991 PDK2Q15119 407 aa17.49■□□□□ 0.39
COL7A1-202ENST00000422991 ASTLQ6HA08 431 aaPredicted RBP17.49■□□□□ 0.39
COL7A1-202ENST00000422991 GRAMD4Q6IC98 578 aa17.49■□□□□ 0.39
COL7A1-202ENST00000422991 CXorf57Q6NSI4 855 aaKnown RBP17.49■□□□□ 0.39
COL7A1-202ENST00000422991 C1orf228Q6PIY5 440 aa17.49■□□□□ 0.39
COL7A1-202ENST00000422991 TFAP2DQ7Z6R9 452 aa17.49■□□□□ 0.39
COL7A1-202ENST00000422991 KATNAL2Q8IYT4 538 aa17.49■□□□□ 0.39
COL7A1-202ENST00000422991 SIX5Q8N196 739 aa17.49■□□□□ 0.39
COL7A1-202ENST00000422991 ZNF557Q8N988 423 aaPredicted RBP17.49■□□□□ 0.39
COL7A1-202ENST00000422991 KCTD6Q8NC69 237 aa17.49■□□□□ 0.39
COL7A1-202ENST00000422991 FIBINQ8TAL6 211 aa17.49■□□□□ 0.39
COL7A1-202ENST00000422991 RAPGEF5Q92565 580 aa17.49■□□□□ 0.39
COL7A1-202ENST00000422991 CSPG4P5Q96PW8 444 aa17.49■□□□□ 0.39
COL7A1-202ENST00000422991 P2RY13Q9BPV8 354 aa17.49■□□□□ 0.39
COL7A1-202ENST00000422991 RETREG1Q9H6L5 497 aa17.49■□□□□ 0.39
COL7A1-202ENST00000422991 TMEM248Q9NWD8 314 aa17.49■□□□□ 0.39
COL7A1-202ENST00000422991 RCOR3Q9P2K3 495 aaPredicted RBP17.49■□□□□ 0.39
COL7A1-202ENST00000422991 DEC1Q9P2X7 70 aa17.49■□□□□ 0.39
COL7A1-202ENST00000422991 SBDSQ9Y3A5 250 aaKnown RBP eCLIP17.49■□□□□ 0.39
COL7A1-202ENST00000422991 HCN4Q9Y3Q4 1203 aa17.49■□□□□ 0.39
COL7A1-202ENST00000422991 PCDHA3Q9Y5H8 950 aa17.49■□□□□ 0.39
COL7A1-202ENST00000422991 CCDC66A2RUB6 948 aa17.48■□□□□ 0.39
COL7A1-202ENST00000422991 LRRD1A4D1F6 860 aa17.48■□□□□ 0.39
COL7A1-202ENST00000422991 TMEM221A6NGB7 291 aa17.48■□□□□ 0.39
COL7A1-202ENST00000422991 C3orf70A6NLC5 250 aaPredicted RBP17.48■□□□□ 0.39
COL7A1-202ENST00000422991 MIF4GDA9UHW6 222 aaKnown RBP17.48■□□□□ 0.39
COL7A1-202ENST00000422991 H0Y626 953 aa17.48■□□□□ 0.39
COL7A1-202ENST00000422991 M0R296 226 aa17.48■□□□□ 0.39
COL7A1-202ENST00000422991 MAN2B1O00754 1011 aa17.48■□□□□ 0.39
COL7A1-202ENST00000422991 TRIM24O15164 1050 aa17.48■□□□□ 0.39
COL7A1-202ENST00000422991 CISD3P0C7P0 127 aa17.48■□□□□ 0.39
COL7A1-202ENST00000422991 KDELR1P24390 212 aa17.48■□□□□ 0.39
COL7A1-202ENST00000422991 DGKGP49619 791 aa17.48■□□□□ 0.39
COL7A1-202ENST00000422991 STARD6P59095 220 aa17.48■□□□□ 0.39
COL7A1-202ENST00000422991 ZFYVE27Q5T4F4 411 aa17.48■□□□□ 0.39
COL7A1-202ENST00000422991 BMP8AQ7Z5Y6 402 aa17.48■□□□□ 0.39
COL7A1-202ENST00000422991 VSIG1Q86XK7 387 aa17.48■□□□□ 0.39
COL7A1-202ENST00000422991 MAP7D3Q8IWC1 876 aa17.48■□□□□ 0.39
COL7A1-202ENST00000422991 SUGP1Q8IWZ8 645 aaKnown RBP17.48■□□□□ 0.39
COL7A1-202ENST00000422991 DDX51Q8N8A6 666 aaKnown RBP eCLIP17.48■□□□□ 0.39
COL7A1-202ENST00000422991 RTL3Q8N8U3 475 aaKnown RBP17.48■□□□□ 0.39
COL7A1-202ENST00000422991 SHDQ96IW2 340 aa17.48■□□□□ 0.39
COL7A1-202ENST00000422991 LMLNQ96KR4 655 aa17.48■□□□□ 0.39
COL7A1-202ENST00000422991 PNKPQ96T60 521 aa17.48■□□□□ 0.39
COL7A1-202ENST00000422991 ZNF670Q9BS34 389 aa17.48■□□□□ 0.39
COL7A1-202ENST00000422991 CALN1Q9BXU9 219 aa17.48■□□□□ 0.39
COL7A1-202ENST00000422991 CATSPERBQ9H7T0 1116 aa17.48■□□□□ 0.39
COL7A1-202ENST00000422991 ARHGEF4Q9NR80 690 aa17.48■□□□□ 0.39
COL7A1-202ENST00000422991 TBC1D30Q9Y2I9 924 aa17.48■□□□□ 0.39
COL7A1-202ENST00000422991 SLC27A6Q9Y2P4 619 aa17.48■□□□□ 0.39
COL7A1-202ENST00000422991 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP17.47■□□□□ 0.39
COL7A1-202ENST00000422991 WASH4PA8MWX3 477 aa17.47■□□□□ 0.39
COL7A1-202ENST00000422991 ZNF487B1APH4 448 aa17.47■□□□□ 0.39
COL7A1-202ENST00000422991 IL4RP24394 825 aa17.47■□□□□ 0.39
COL7A1-202ENST00000422991 HLA-FP30511 346 aa17.47■□□□□ 0.39
COL7A1-202ENST00000422991 CD70P32970 193 aa17.47■□□□□ 0.39
COL7A1-202ENST00000422991 MAPKAPK2P49137 400 aa17.47■□□□□ 0.39
COL7A1-202ENST00000422991 PEX5P50542 639 aa17.47■□□□□ 0.39
COL7A1-202ENST00000422991 GALK1P51570 392 aa17.47■□□□□ 0.39
COL7A1-202ENST00000422991 LMAN2Q12907 356 aa17.47■□□□□ 0.39
COL7A1-202ENST00000422991 MMRN1Q13201 1228 aa17.47■□□□□ 0.39
COL7A1-202ENST00000422991 ZNF177Q13360 481 aaPredicted RBP17.47■□□□□ 0.39
COL7A1-202ENST00000422991 PON2Q15165 354 aa17.47■□□□□ 0.39
COL7A1-202ENST00000422991 FSCBQ5H9T9 825 aa17.47■□□□□ 0.39
COL7A1-202ENST00000422991 TMEM196Q5HYL7 178 aa17.47■□□□□ 0.39
COL7A1-202ENST00000422991 SETD3Q86TU7 594 aaPredicted RBP17.47■□□□□ 0.39
COL7A1-202ENST00000422991 CCDC117Q8IWD4 279 aaPredicted RBP17.47■□□□□ 0.39
COL7A1-202ENST00000422991 TERB1Q8NA31 727 aa17.47■□□□□ 0.39
COL7A1-202ENST00000422991 UBE2Q2Q8WVN8 375 aa17.47■□□□□ 0.39
COL7A1-202ENST00000422991 FAM3CQ92520 227 aa17.47■□□□□ 0.39
COL7A1-202ENST00000422991 ALG3Q92685 438 aa17.47■□□□□ 0.39
COL7A1-202ENST00000422991 EXOC4Q96A65 974 aa17.47■□□□□ 0.39
COL7A1-202ENST00000422991 FAF2Q96CS3 445 aa17.47■□□□□ 0.39
COL7A1-202ENST00000422991 TRIM44Q96DX7 344 aaPredicted RBP17.47■□□□□ 0.39
COL7A1-202ENST00000422991 HES6Q96HZ4 224 aa17.47■□□□□ 0.39
COL7A1-202ENST00000422991 FBRSL1Q9HCM7 1045 aaKnown RBP17.47■□□□□ 0.39
COL7A1-202ENST00000422991 ABCB8Q9NUT2 735 aa17.47■□□□□ 0.39
COL7A1-202ENST00000422991 RAPGEFL1Q9UHV5 662 aa17.47■□□□□ 0.39
COL7A1-202ENST00000422991 PACSIN2Q9UNF0 486 aaPredicted RBP17.47■□□□□ 0.39
COL7A1-202ENST00000422991 MUC22E2RYF6 1773 aaPredicted RBP17.46■□□□□ 0.39
COL7A1-202ENST00000422991 DDX3YO15523 660 aaKnown RBP17.46■□□□□ 0.39
COL7A1-202ENST00000422991 DAPK3O43293 454 aa17.46■□□□□ 0.39
COL7A1-202ENST00000422991 KIF5CO60282 957 aa17.46■□□□□ 0.39
COL7A1-202ENST00000422991 KAT7O95251 611 aa17.46■□□□□ 0.39
COL7A1-202ENST00000422991 ERCC2P18074 760 aa17.46■□□□□ 0.39
COL7A1-202ENST00000422991 CD72P21854 359 aa17.46■□□□□ 0.39
COL7A1-202ENST00000422991 OR1E1P30953 314 aa17.46■□□□□ 0.39
COL7A1-202ENST00000422991 GRIA2P42262 883 aa17.46■□□□□ 0.39
COL7A1-202ENST00000422991 TAZQ16635 292 aa17.46■□□□□ 0.39
COL7A1-202ENST00000422991 PREPLQ4J6C6 727 aaPredicted RBP17.46■□□□□ 0.39
COL7A1-202ENST00000422991 C6orf118Q5T5N4 469 aa17.46■□□□□ 0.39
COL7A1-202ENST00000422991 MEI1Q5TIA1 1274 aa17.46■□□□□ 0.39
COL7A1-202ENST00000422991 FSTL4Q6MZW2 842 aa17.46■□□□□ 0.39
COL7A1-202ENST00000422991 ZNF852Q6ZMS4 543 aa17.46■□□□□ 0.39
Retrieved 100 of 20,778 RNA–protein pairs in 63.1 ms