RNA–Protein interactions for RNA: ENST00000359984.12

CLN3-205, Transcript of CLN3, battenin, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLN3, Length 1,876 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-205ENST00000359984 FAM187AA6NFU0 413 aa20.45■□□□□ 0.86
CLN3-205ENST00000359984 TSPAN3O60637 253 aa20.45■□□□□ 0.86
CLN3-205ENST00000359984 SERPINB6P35237 376 aa20.45■□□□□ 0.86
CLN3-205ENST00000359984 LTBRP36941 435 aa20.45■□□□□ 0.86
CLN3-205ENST00000359984 SGSHP51688 502 aa20.45■□□□□ 0.86
CLN3-205ENST00000359984 XRCC4Q13426 336 aa20.45■□□□□ 0.86
CLN3-205ENST00000359984 COL19A1Q14993 1142 aa20.45■□□□□ 0.86
CLN3-205ENST00000359984 DARS2Q6PI48 645 aaKnown RBP20.45■□□□□ 0.86
CLN3-205ENST00000359984 EP400NLQ6ZTU2 488 aa20.45■□□□□ 0.86
CLN3-205ENST00000359984 BBS7Q8IWZ6 715 aa20.45■□□□□ 0.86
CLN3-205ENST00000359984 GPR161Q8N6U8 529 aaKnown RBP20.45■□□□□ 0.86
CLN3-205ENST00000359984 GRK7Q8WTQ7 553 aa20.45■□□□□ 0.86
CLN3-205ENST00000359984 FGF13Q92913 245 aa20.45■□□□□ 0.86
CLN3-205ENST00000359984 CELF6Q96J87 481 aaKnown RBP20.45■□□□□ 0.86
CLN3-205ENST00000359984 TRIM51Q9BSJ1 452 aa20.45■□□□□ 0.86
CLN3-205ENST00000359984 ZNF212Q9UDV6 495 aa20.45■□□□□ 0.86
CLN3-205ENST00000359984 ZFP37Q9Y6Q3 630 aaPredicted RBP20.45■□□□□ 0.86
CLN3-205ENST00000359984 GFRA2O00451 464 aa20.45■□□□□ 0.86
CLN3-205ENST00000359984 HEXIM1O94992 359 aaKnown RBP20.45■□□□□ 0.86
CLN3-205ENST00000359984 RPS24P62847 133 aaKnown RBP20.45■□□□□ 0.86
CLN3-205ENST00000359984 LMNB2Q03252 620 aa20.45■□□□□ 0.86
CLN3-205ENST00000359984 RABGAP1LQ5R372 815 aa20.45■□□□□ 0.86
CLN3-205ENST00000359984 ATAT1Q5SQI0 421 aa20.45■□□□□ 0.86
CLN3-205ENST00000359984 ARHGAP12Q8IWW6 846 aa20.45■□□□□ 0.86
CLN3-205ENST00000359984 MICALL1Q8N3F8 863 aa20.45■□□□□ 0.86
CLN3-205ENST00000359984 LZTR1Q8N653 840 aa20.45■□□□□ 0.86
CLN3-205ENST00000359984 ALLCQ8N6M5 410 aa20.45■□□□□ 0.86
CLN3-205ENST00000359984 NEU2Q9Y3R4 380 aa20.45■□□□□ 0.86
CLN3-205ENST00000359984 RAD54BQ9Y620 910 aa20.45■□□□□ 0.86
CLN3-205ENST00000359984 ZSCAN5CA6NGD5 496 aaPredicted RBP20.44■□□□□ 0.86
CLN3-205ENST00000359984 WEE1P30291 646 aa20.44■□□□□ 0.86
CLN3-205ENST00000359984 PDK1Q15118 436 aa20.44■□□□□ 0.86
CLN3-205ENST00000359984 ZNF77Q15935 545 aa20.44■□□□□ 0.86
CLN3-205ENST00000359984 CES5AQ6NT32 575 aa20.44■□□□□ 0.86
CLN3-205ENST00000359984 GET4Q7L5D6 327 aaPredicted RBP20.44■□□□□ 0.86
CLN3-205ENST00000359984 GSTA5Q7RTV2 222 aa20.44■□□□□ 0.86
CLN3-205ENST00000359984 PNKPQ96T60 521 aa20.44■□□□□ 0.86
CLN3-205ENST00000359984 USP29Q9HBJ7 922 aa20.44■□□□□ 0.86
CLN3-205ENST00000359984 SZT2Q5T011 3432 aa20.44■□□□□ 0.86
CLN3-205ENST00000359984 HELZP42694 1942 aaKnown RBP20.43■□□□□ 0.86
CLN3-205ENST00000359984 BCLAF3A2AJT9 711 aaKnown RBP20.43■□□□□ 0.86
CLN3-205ENST00000359984 TARSL2A2RTX5 802 aaKnown RBP20.43■□□□□ 0.86
CLN3-205ENST00000359984 TCF3P15923 654 aa20.43■□□□□ 0.86
CLN3-205ENST00000359984 GALNT2Q10471 571 aa20.43■□□□□ 0.86
CLN3-205ENST00000359984 USP4Q13107 963 aa20.43■□□□□ 0.86
CLN3-205ENST00000359984 SLC45A4Q5BKX6 768 aa20.43■□□□□ 0.86
CLN3-205ENST00000359984 AFMIDQ63HM1 303 aa20.43■□□□□ 0.86
CLN3-205ENST00000359984 PRUNE1Q86TP1 453 aa20.43■□□□□ 0.86
CLN3-205ENST00000359984 QKIQ96PU8 341 aaKnown RBP eCLIP20.43■□□□□ 0.86
CLN3-205ENST00000359984 GAS2L1Q99501 681 aaPredicted RBP20.43■□□□□ 0.86
CLN3-205ENST00000359984 LGMNQ99538 433 aa20.43■□□□□ 0.86
CLN3-205ENST00000359984 NOL6Q9H6R4 1146 aaKnown RBP20.43■□□□□ 0.86
CLN3-205ENST00000359984 HACD1B0YJ81 288 aa20.43■□□□□ 0.86
CLN3-205ENST00000359984 SGK1O00141 431 aa20.43■□□□□ 0.86
CLN3-205ENST00000359984 GAS8O95995 478 aa20.43■□□□□ 0.86
CLN3-205ENST00000359984 RBL1P28749 1068 aa20.43■□□□□ 0.86
CLN3-205ENST00000359984 GDF10P55107 478 aa20.43■□□□□ 0.86
CLN3-205ENST00000359984 GUCY2DQ02846 1103 aa20.43■□□□□ 0.86
CLN3-205ENST00000359984 PPP1R7Q15435 360 aa20.43■□□□□ 0.86
CLN3-205ENST00000359984 FAM78AQ5JUQ0 283 aa20.43■□□□□ 0.86
CLN3-205ENST00000359984 SYDE1Q6ZW31 735 aaPredicted RBP20.43■□□□□ 0.86
CLN3-205ENST00000359984 CDKL3Q8IVW4 592 aaPredicted RBP20.43■□□□□ 0.86
CLN3-205ENST00000359984 UMODL1-AS1Q8N2C9 162 aa20.43■□□□□ 0.86
CLN3-205ENST00000359984 CPXM2Q8N436 756 aa20.43■□□□□ 0.86
CLN3-205ENST00000359984 FAM71DQ8N9W8 422 aa20.43■□□□□ 0.86
CLN3-205ENST00000359984 GLIS1Q8NBF1 620 aa20.43■□□□□ 0.86
CLN3-205ENST00000359984 TFB1MQ8WVM0 346 aaKnown RBP20.43■□□□□ 0.86
CLN3-205ENST00000359984 PABPC5Q96DU9 382 aaKnown RBP20.43■□□□□ 0.86
CLN3-205ENST00000359984 MSLNLQ96KJ4 702 aa20.43■□□□□ 0.86
CLN3-205ENST00000359984 SLC39A8Q9C0K1 460 aa20.43■□□□□ 0.86
CLN3-205ENST00000359984 DONSONQ9NYP3 566 aa20.43■□□□□ 0.86
CLN3-205ENST00000359984 GDE1Q9NZC3 331 aa20.43■□□□□ 0.86
CLN3-205ENST00000359984 DOCK4Q8N1I0 1966 aa20.42■□□□□ 0.86
CLN3-205ENST00000359984 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP20.42■□□□□ 0.86
CLN3-205ENST00000359984 BHMG1C9JSJ3 638 aaPredicted RBP20.42■□□□□ 0.86
CLN3-205ENST00000359984 PPP1R12AO14974 1030 aaPredicted RBP20.42■□□□□ 0.86
CLN3-205ENST00000359984 NCAM2O15394 837 aa20.42■□□□□ 0.86
CLN3-205ENST00000359984 H2AFXP16104 143 aaPredicted RBP20.42■□□□□ 0.86
CLN3-205ENST00000359984 MX2P20592 715 aa20.42■□□□□ 0.86
CLN3-205ENST00000359984 CDH4P55283 916 aa20.42■□□□□ 0.86
CLN3-205ENST00000359984 TRIP13Q15645 432 aaPredicted RBP20.42■□□□□ 0.86
CLN3-205ENST00000359984 CCNYQ8ND76 341 aa20.42■□□□□ 0.86
CLN3-205ENST00000359984 RSAD2Q8WXG1 361 aa20.42■□□□□ 0.86
CLN3-205ENST00000359984 P2RY11Q96G91 374 aa20.42■□□□□ 0.86
CLN3-205ENST00000359984 ASB16Q96NS5 453 aa20.42■□□□□ 0.86
CLN3-205ENST00000359984 LRRC3BQ96PB8 259 aa20.42■□□□□ 0.86
CLN3-205ENST00000359984 ERP44Q9BS26 406 aa20.42■□□□□ 0.86
CLN3-205ENST00000359984 PARD6BQ9BYG5 372 aa20.42■□□□□ 0.86
CLN3-205ENST00000359984 RETREG1Q9H6L5 497 aa20.42■□□□□ 0.86
CLN3-205ENST00000359984 EPB41L5Q9HCM4 733 aa20.42■□□□□ 0.86
CLN3-205ENST00000359984 UTP11Q9Y3A2 253 aaKnown RBP20.42■□□□□ 0.86
CLN3-205ENST00000359984 ZSCAN5DPP0CG00 497 aa20.41■□□□□ 0.86
CLN3-205ENST00000359984 ETS1P14921 441 aa20.41■□□□□ 0.86
CLN3-205ENST00000359984 OR1E1P30953 314 aa20.41■□□□□ 0.86
CLN3-205ENST00000359984 STIP1P31948 543 aaKnown RBP20.41■□□□□ 0.86
CLN3-205ENST00000359984 CHKAP35790 457 aa20.41■□□□□ 0.86
CLN3-205ENST00000359984 GARSP41250 739 aaKnown RBP20.41■□□□□ 0.86
CLN3-205ENST00000359984 MAPKAPK2P49137 400 aa20.41■□□□□ 0.86
CLN3-205ENST00000359984 NDST2P52849 883 aa20.41■□□□□ 0.86
CLN3-205ENST00000359984 PTK6Q13882 451 aa20.41■□□□□ 0.86
Retrieved 100 of 20,778 RNA–protein pairs in 66.4 ms