RNA–Protein interactions for RNA: ENST00000354098.7

SHMT1-203, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 1 (best) BASIC

Gene SHMT1, Length 1,656 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-203ENST00000354098 CWC15Q9P013 229 aaKnown RBP22.81■■□□□ 1.24
SHMT1-203ENST00000354098 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP22.81■■□□□ 1.24
SHMT1-203ENST00000354098 FAM170BA6NMN3 283 aa22.81■■□□□ 1.24
SHMT1-203ENST00000354098 EEF2KO00418 725 aaKnown RBP22.81■■□□□ 1.24
SHMT1-203ENST00000354098 HOXC13P31276 330 aa22.81■■□□□ 1.24
SHMT1-203ENST00000354098 NUMBP49757 651 aa22.81■■□□□ 1.24
SHMT1-203ENST00000354098 ARSEP51690 589 aa22.81■■□□□ 1.24
SHMT1-203ENST00000354098 CDH6P55285 790 aa22.81■■□□□ 1.24
SHMT1-203ENST00000354098 TPI1P60174 286 aa22.81■■□□□ 1.24
SHMT1-203ENST00000354098 GRSF1Q12849 480 aaKnown RBP eCLIP22.81■■□□□ 1.24
SHMT1-203ENST00000354098 ZNF177Q13360 481 aaPredicted RBP22.81■■□□□ 1.24
SHMT1-203ENST00000354098 IFI16Q16666 785 aaKnown RBP22.81■■□□□ 1.24
SHMT1-203ENST00000354098 GEN1Q17RS7 908 aa22.81■■□□□ 1.24
SHMT1-203ENST00000354098 CXorf57Q6NSI4 855 aaKnown RBP22.81■■□□□ 1.24
SHMT1-203ENST00000354098 POLNQ7Z5Q5 900 aa22.81■■□□□ 1.24
SHMT1-203ENST00000354098 NLRP14Q86W24 1093 aa22.81■■□□□ 1.24
SHMT1-203ENST00000354098 REXO1L1PQ8IX06 675 aa22.81■■□□□ 1.24
SHMT1-203ENST00000354098 RHOT1Q8IXI2 618 aa22.81■■□□□ 1.24
SHMT1-203ENST00000354098 TERB1Q8NA31 727 aa22.81■■□□□ 1.24
SHMT1-203ENST00000354098 RBM12Q9NTZ6 932 aaKnown RBP22.81■■□□□ 1.24
SHMT1-203ENST00000354098 SLC27A6Q9Y2P4 619 aa22.81■■□□□ 1.24
SHMT1-203ENST00000354098 KIAA1549LQ6ZVL6 1849 aa22.8■■□□□ 1.24
SHMT1-203ENST00000354098 PRRT4C9JH25 899 aa22.8■■□□□ 1.24
SHMT1-203ENST00000354098 K7EQS6 105 aa22.8■■□□□ 1.24
SHMT1-203ENST00000354098 GRIA2P42262 883 aa22.8■■□□□ 1.24
SHMT1-203ENST00000354098 LMAN2Q12907 356 aa22.8■■□□□ 1.24
SHMT1-203ENST00000354098 FZD5Q13467 585 aa22.8■■□□□ 1.24
SHMT1-203ENST00000354098 RAPGEF5Q92565 580 aa22.8■■□□□ 1.24
SHMT1-203ENST00000354098 TRMT1Q9NXH9 659 aaKnown RBP22.8■■□□□ 1.24
SHMT1-203ENST00000354098 MRPS17Q9Y2R5 130 aaKnown RBP22.8■■□□□ 1.24
SHMT1-203ENST00000354098 A0A0A0MRY4 1105 aa22.79■■□□□ 1.24
SHMT1-203ENST00000354098 TBC1D3BA6NDS4 549 aa22.79■■□□□ 1.24
SHMT1-203ENST00000354098 APODP05090 189 aa22.79■■□□□ 1.24
SHMT1-203ENST00000354098 RHOQP17081 205 aa22.79■■□□□ 1.24
SHMT1-203ENST00000354098 MARCKSL1P49006 195 aa22.79■■□□□ 1.24
SHMT1-203ENST00000354098 CCINQ13939 588 aa22.79■■□□□ 1.24
SHMT1-203ENST00000354098 KRT81Q14533 505 aa22.79■■□□□ 1.24
SHMT1-203ENST00000354098 ZFYVE27Q5T4F4 411 aa22.79■■□□□ 1.24
SHMT1-203ENST00000354098 LRRC38Q5VT99 294 aa22.79■■□□□ 1.24
SHMT1-203ENST00000354098 TMEM215Q68D42 235 aa22.79■■□□□ 1.24
SHMT1-203ENST00000354098 CWF19L1Q69YN2 538 aaKnown RBP22.79■■□□□ 1.24
SHMT1-203ENST00000354098 RFX8Q6ZV50 586 aa22.79■■□□□ 1.24
SHMT1-203ENST00000354098 CCDC117Q8IWD4 279 aaPredicted RBP22.79■■□□□ 1.24
SHMT1-203ENST00000354098 KCTD6Q8NC69 237 aa22.79■■□□□ 1.24
SHMT1-203ENST00000354098 FAM71BQ8TC56 605 aa22.79■■□□□ 1.24
SHMT1-203ENST00000354098 DNAI1Q9UI46 699 aa22.79■■□□□ 1.24
SHMT1-203ENST00000354098 GGA2Q9UJY4 613 aa22.79■■□□□ 1.24
SHMT1-203ENST00000354098 TBC1D30Q9Y2I9 924 aa22.79■■□□□ 1.24
SHMT1-203ENST00000354098 FTCDO95954 541 aa22.78■■□□□ 1.24
SHMT1-203ENST00000354098 CHRNB1P11230 501 aa22.78■■□□□ 1.24
SHMT1-203ENST00000354098 DRD1P21728 446 aa22.78■■□□□ 1.24
SHMT1-203ENST00000354098 IL4RP24394 825 aa22.78■■□□□ 1.24
SHMT1-203ENST00000354098 OR1E1P30953 314 aa22.78■■□□□ 1.24
SHMT1-203ENST00000354098 MMRN1Q13201 1228 aa22.78■■□□□ 1.24
SHMT1-203ENST00000354098 NT5DC3Q86UY8 548 aa22.78■■□□□ 1.24
SHMT1-203ENST00000354098 PJA1Q8NG27 643 aa22.78■■□□□ 1.24
SHMT1-203ENST00000354098 TSC1Q92574 1164 aa22.78■■□□□ 1.24
SHMT1-203ENST00000354098 KRT35Q92764 455 aa22.78■■□□□ 1.24
SHMT1-203ENST00000354098 EXOC4Q96A65 974 aa22.78■■□□□ 1.24
SHMT1-203ENST00000354098 NELL2Q99435 816 aa22.78■■□□□ 1.24
SHMT1-203ENST00000354098 TMEM248Q9NWD8 314 aa22.78■■□□□ 1.24
SHMT1-203ENST00000354098 INTS6Q9UL03 887 aaKnown RBP22.78■■□□□ 1.24
SHMT1-203ENST00000354098 FAM86C2PA6NEL3 165 aa22.77■■□□□ 1.24
SHMT1-203ENST00000354098 USP27XA6NNY8 438 aa22.77■■□□□ 1.24
SHMT1-203ENST00000354098 ZSCAN12O43309 604 aa22.77■■□□□ 1.24
SHMT1-203ENST00000354098 PI15O43692 258 aa22.77■■□□□ 1.24
SHMT1-203ENST00000354098 PABPC1P11940 636 aaKnown RBP22.77■■□□□ 1.24
SHMT1-203ENST00000354098 MZF1P28698 734 aaPredicted RBP22.77■■□□□ 1.24
SHMT1-203ENST00000354098 CSKP41240 450 aa22.77■■□□□ 1.24
SHMT1-203ENST00000354098 HCAR3P49019 387 aa22.77■■□□□ 1.24
SHMT1-203ENST00000354098 DPYSL3Q14195 570 aa22.77■■□□□ 1.24
SHMT1-203ENST00000354098 EMC10Q5UCC4 262 aa22.77■■□□□ 1.24
SHMT1-203ENST00000354098 ANKS1BQ7Z6G8 1248 aa22.77■■□□□ 1.24
SHMT1-203ENST00000354098 KIAA0907Q7Z7F0 614 aaPredicted RBP22.77■■□□□ 1.24
SHMT1-203ENST00000354098 SUGP1Q8IWZ8 645 aaKnown RBP22.77■■□□□ 1.24
SHMT1-203ENST00000354098 CCDC105Q8IYK2 499 aa22.77■■□□□ 1.24
SHMT1-203ENST00000354098 APCDD1Q8J025 514 aa22.77■■□□□ 1.24
SHMT1-203ENST00000354098 DDX51Q8N8A6 666 aaKnown RBP eCLIP22.77■■□□□ 1.24
SHMT1-203ENST00000354098 PBXIP1Q96AQ6 731 aa22.77■■□□□ 1.24
SHMT1-203ENST00000354098 CSPG4P5Q96PW8 444 aa22.77■■□□□ 1.24
SHMT1-203ENST00000354098 CALN1Q9BXU9 219 aa22.77■■□□□ 1.24
SHMT1-203ENST00000354098 LMAN1LQ9HAT1 526 aa22.77■■□□□ 1.24
SHMT1-203ENST00000354098 C11orf16Q9NQ32 467 aa22.77■■□□□ 1.24
SHMT1-203ENST00000354098 KIAA1522Q9P206 1035 aaPredicted RBP22.77■■□□□ 1.24
SHMT1-203ENST00000354098 PACSIN2Q9UNF0 486 aaPredicted RBP22.77■■□□□ 1.24
SHMT1-203ENST00000354098 SIT1Q9Y3P8 196 aa22.77■■□□□ 1.24
SHMT1-203ENST00000354098 DOCK4Q8N1I0 1966 aa22.77■■□□□ 1.24
SHMT1-203ENST00000354098 H3BRJ5 948 aa22.77■■□□□ 1.24
SHMT1-203ENST00000354098 DAPK3O43293 454 aa22.77■■□□□ 1.24
SHMT1-203ENST00000354098 PSTPIP1O43586 416 aa22.77■■□□□ 1.24
SHMT1-203ENST00000354098 KDELR1P24390 212 aa22.77■■□□□ 1.24
SHMT1-203ENST00000354098 HTR7P34969 479 aa22.77■■□□□ 1.24
SHMT1-203ENST00000354098 ARL4AP40617 200 aa22.77■■□□□ 1.24
SHMT1-203ENST00000354098 SEC13P55735 322 aa22.77■■□□□ 1.24
SHMT1-203ENST00000354098 DPYSQ14117 519 aa22.77■■□□□ 1.24
SHMT1-203ENST00000354098 FUT11Q495W5 492 aa22.77■■□□□ 1.24
SHMT1-203ENST00000354098 PREPLQ4J6C6 727 aaPredicted RBP22.77■■□□□ 1.24
SHMT1-203ENST00000354098 RNF219Q5W0B1 726 aaPredicted RBP22.77■■□□□ 1.24
SHMT1-203ENST00000354098 ADIPOR2Q86V24 386 aa22.77■■□□□ 1.24
SHMT1-203ENST00000354098 RTL3Q8N8U3 475 aaKnown RBP22.77■■□□□ 1.24
Retrieved 100 of 20,778 RNA–protein pairs in 25.4 ms