RNA–Protein interactions for RNA: ENST00000332797.10

CCDC28A-201, Transcript of coiled-coil domain containing 28A, humanhuman

TSL 1 (best) BASIC

Gene CCDC28A, Length 1,496 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28A-201ENST00000332797 CXorf57Q6NSI4 855 aaKnown RBP16.36■□□□□ 0.21
CCDC28A-201ENST00000332797 TSSK4Q6SA08 328 aa16.36■□□□□ 0.21
CCDC28A-201ENST00000332797 RAD9BQ6WBX8 426 aa16.36■□□□□ 0.21
CCDC28A-201ENST00000332797 MAMSTRQ6ZN01 415 aa16.36■□□□□ 0.21
CCDC28A-201ENST00000332797 TRMT11Q7Z4G4 463 aaKnown RBP16.36■□□□□ 0.21
CCDC28A-201ENST00000332797 ADIPOR2Q86V24 386 aa16.36■□□□□ 0.21
CCDC28A-201ENST00000332797 TMEM139Q8IV31 216 aa16.36■□□□□ 0.21
CCDC28A-201ENST00000332797 CHPFQ8IZ52 775 aa16.36■□□□□ 0.21
CCDC28A-201ENST00000332797 MAML2Q8IZL2 1156 aaPredicted RBP16.36■□□□□ 0.21
CCDC28A-201ENST00000332797 NIPA2Q8N8Q9 360 aa16.36■□□□□ 0.21
CCDC28A-201ENST00000332797 SLC35G2Q8TBE7 412 aa16.36■□□□□ 0.21
CCDC28A-201ENST00000332797 KCNV2Q8TDN2 545 aa16.36■□□□□ 0.21
CCDC28A-201ENST00000332797 RFFLQ8WZ73 363 aa16.36■□□□□ 0.21
CCDC28A-201ENST00000332797 TBC1D31Q96DN5 1066 aa16.36■□□□□ 0.21
CCDC28A-201ENST00000332797 ACOX2Q99424 681 aa16.36■□□□□ 0.21
CCDC28A-201ENST00000332797 EIF3CQ99613 913 aaKnown RBP16.36■□□□□ 0.21
CCDC28A-201ENST00000332797 NCAPGQ9BPX3 1015 aa16.36■□□□□ 0.21
CCDC28A-201ENST00000332797 SNRNP25Q9BV90 132 aaKnown RBP16.36■□□□□ 0.21
CCDC28A-201ENST00000332797 ZYG11BQ9C0D3 744 aa16.36■□□□□ 0.21
CCDC28A-201ENST00000332797 LUC7LQ9NQ29 371 aaKnown RBP16.36■□□□□ 0.21
CCDC28A-201ENST00000332797 PPARGC1AQ9UBK2 798 aaKnown RBP16.36■□□□□ 0.21
CCDC28A-201ENST00000332797 RAPGEFL1Q9UHV5 662 aa16.36■□□□□ 0.21
CCDC28A-201ENST00000332797 MMP17Q9ULZ9 603 aa16.36■□□□□ 0.21
CCDC28A-201ENST00000332797 USP18Q9UMW8 372 aa16.36■□□□□ 0.21
CCDC28A-201ENST00000332797 SLC8A2Q9UPR5 921 aa16.36■□□□□ 0.21
CCDC28A-201ENST00000332797 PCDHA13Q9Y5I0 950 aa16.36■□□□□ 0.21
CCDC28A-201ENST00000332797 WDFY4Q6ZS81 3184 aa16.36■□□□□ 0.21
CCDC28A-201ENST00000332797 TMEM110-MUSTN1A8MSY1 372 aa16.35■□□□□ 0.21
CCDC28A-201ENST00000332797 H0Y858 1186 aa16.35■□□□□ 0.21
CCDC28A-201ENST00000332797 SGK1O00141 431 aa16.35■□□□□ 0.21
CCDC28A-201ENST00000332797 CREB3O43889 395 aa16.35■□□□□ 0.21
CCDC28A-201ENST00000332797 LRIG2O94898 1065 aa16.35■□□□□ 0.21
CCDC28A-201ENST00000332797 MOCS3O95396 460 aa16.35■□□□□ 0.21
CCDC28A-201ENST00000332797 TCF4P15884 667 aa16.35■□□□□ 0.21
CCDC28A-201ENST00000332797 POLR2EP19388 210 aaKnown RBP16.35■□□□□ 0.21
CCDC28A-201ENST00000332797 SSR1P43307 286 aaKnown RBP16.35■□□□□ 0.21
CCDC28A-201ENST00000332797 NUMBP49757 651 aa16.35■□□□□ 0.21
CCDC28A-201ENST00000332797 HSF5Q4G112 596 aaPredicted RBP16.35■□□□□ 0.21
CCDC28A-201ENST00000332797 PITRM1Q5JRX3 1037 aa16.35■□□□□ 0.21
CCDC28A-201ENST00000332797 EOGTQ5NDL2 527 aa16.35■□□□□ 0.21
CCDC28A-201ENST00000332797 ARTNQ5T4W7 220 aa16.35■□□□□ 0.21
CCDC28A-201ENST00000332797 ERMARDQ5T6L9 678 aa16.35■□□□□ 0.21
CCDC28A-201ENST00000332797 MANEALQ5VSG8 457 aa16.35■□□□□ 0.21
CCDC28A-201ENST00000332797 SYT13Q7L8C5 426 aa16.35■□□□□ 0.21
CCDC28A-201ENST00000332797 RHOT2Q8IXI1 618 aa16.35■□□□□ 0.21
CCDC28A-201ENST00000332797 CYB5D2Q8WUJ1 264 aa16.35■□□□□ 0.21
CCDC28A-201ENST00000332797 EPAS1Q99814 870 aa16.35■□□□□ 0.21
CCDC28A-201ENST00000332797 KCNH6Q9H252 994 aa16.35■□□□□ 0.21
CCDC28A-201ENST00000332797 DHX35Q9H5Z1 703 aaKnown RBP16.35■□□□□ 0.21
CCDC28A-201ENST00000332797 CACNA2D2Q9NY47 1150 aa16.35■□□□□ 0.21
CCDC28A-201ENST00000332797 FBXO4Q9UKT5 387 aa16.35■□□□□ 0.21
CCDC28A-201ENST00000332797 INTS6Q9UL03 887 aaKnown RBP16.35■□□□□ 0.21
CCDC28A-201ENST00000332797 TIMM44O43615 452 aa16.35■□□□□ 0.21
CCDC28A-201ENST00000332797 ADAM23O75077 832 aa16.35■□□□□ 0.21
CCDC28A-201ENST00000332797 PROSCO94903 275 aa16.35■□□□□ 0.21
CCDC28A-201ENST00000332797 RHOCP08134 193 aa16.35■□□□□ 0.21
CCDC28A-201ENST00000332797 HNRNPLP14866 589 aaKnown RBP eCLIP16.35■□□□□ 0.21
CCDC28A-201ENST00000332797 MZF1P28698 734 aaPredicted RBP16.35■□□□□ 0.21
CCDC28A-201ENST00000332797 NTSR1P30989 418 aa16.35■□□□□ 0.21
CCDC28A-201ENST00000332797 L1CAMP32004 1257 aa16.35■□□□□ 0.21
CCDC28A-201ENST00000332797 OXCT1P55809 520 aa16.35■□□□□ 0.21
CCDC28A-201ENST00000332797 TCF15Q12870 199 aa16.35■□□□□ 0.21
CCDC28A-201ENST00000332797 CA9Q16790 459 aa16.35■□□□□ 0.21
CCDC28A-201ENST00000332797 SMTNL2Q2TAL5 461 aa16.35■□□□□ 0.21
CCDC28A-201ENST00000332797 PLEKHG6Q3KR16 790 aa16.35■□□□□ 0.21
CCDC28A-201ENST00000332797 SDE2Q6IQ49 451 aa16.35■□□□□ 0.21
CCDC28A-201ENST00000332797 CYP4V2Q6ZWL3 525 aaPredicted RBP16.35■□□□□ 0.21
CCDC28A-201ENST00000332797 APCDD1Q8J025 514 aa16.35■□□□□ 0.21
CCDC28A-201ENST00000332797 OR52K2Q8NGK3 314 aa16.35■□□□□ 0.21
CCDC28A-201ENST00000332797 HHIPQ96QV1 700 aa16.35■□□□□ 0.21
CCDC28A-201ENST00000332797 ZWILCHQ9H900 591 aa16.35■□□□□ 0.21
CCDC28A-201ENST00000332797 THAP10Q9P2Z0 257 aaPredicted RBP16.35■□□□□ 0.21
CCDC28A-201ENST00000332797 LCMT1Q9UIC8 334 aa16.35■□□□□ 0.21
CCDC28A-201ENST00000332797 TFR2Q9UP52 801 aa16.35■□□□□ 0.21
CCDC28A-201ENST00000332797 NEU3Q9UQ49 428 aa16.35■□□□□ 0.21
CCDC28A-201ENST00000332797 TBC1D30Q9Y2I9 924 aa16.35■□□□□ 0.21
CCDC28A-201ENST00000332797 K7ESF4 209 aa16.34■□□□□ 0.21
CCDC28A-201ENST00000332797 PAPSS2O95340 614 aaPredicted RBP16.34■□□□□ 0.21
CCDC28A-201ENST00000332797 ATP5BP06576 529 aaKnown RBP16.34■□□□□ 0.21
CCDC28A-201ENST00000332797 SP9P0CG40 484 aa16.34■□□□□ 0.21
CCDC28A-201ENST00000332797 HOXB2P14652 356 aa16.34■□□□□ 0.21
CCDC28A-201ENST00000332797 IL1R2P27930 398 aa16.34■□□□□ 0.21
CCDC28A-201ENST00000332797 OR1E1P30953 314 aa16.34■□□□□ 0.21
CCDC28A-201ENST00000332797 HOXC13P31276 330 aa16.34■□□□□ 0.21
CCDC28A-201ENST00000332797 PTPN5P54829 565 aa16.34■□□□□ 0.21
CCDC28A-201ENST00000332797 SEMA3BQ13214 749 aa16.34■□□□□ 0.21
CCDC28A-201ENST00000332797 SLC12A1Q13621 1099 aa16.34■□□□□ 0.21
CCDC28A-201ENST00000332797 ZNF234Q14588 700 aa16.34■□□□□ 0.21
CCDC28A-201ENST00000332797 MESDQ14696 234 aa16.34■□□□□ 0.21
CCDC28A-201ENST00000332797 E2F5Q15329 346 aa16.34■□□□□ 0.21
CCDC28A-201ENST00000332797 FNDC3BQ53EP0 1204 aaKnown RBP16.34■□□□□ 0.21
CCDC28A-201ENST00000332797 KCNT1Q5JUK3 1230 aa16.34■□□□□ 0.21
CCDC28A-201ENST00000332797 C6orf118Q5T5N4 469 aa16.34■□□□□ 0.21
CCDC28A-201ENST00000332797 RNF219Q5W0B1 726 aaPredicted RBP16.34■□□□□ 0.21
CCDC28A-201ENST00000332797 CPNE8Q86YQ8 564 aa16.34■□□□□ 0.21
CCDC28A-201ENST00000332797 ACRBPQ8NEB7 543 aa16.34■□□□□ 0.21
CCDC28A-201ENST00000332797 TTC17Q96AE7 1141 aa16.34■□□□□ 0.21
CCDC28A-201ENST00000332797 ERLEC1Q96DZ1 483 aa16.34■□□□□ 0.21
CCDC28A-201ENST00000332797 KCTD15Q96SI1 283 aaPredicted RBP16.34■□□□□ 0.21
CCDC28A-201ENST00000332797 MUC3BQ9H195 1237 aa16.34■□□□□ 0.21
Retrieved 100 of 20,778 RNA–protein pairs in 16.4 ms