RNA–Protein interactions for RNA: ENST00000331194.8

CCDC88C-201, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 5 BASIC

Gene CCDC88C, Length 3,104 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-201ENST00000331194 LSM12Q3MHD2 195 aaKnown RBP13.77□□□□□ -0.21
CCDC88C-201ENST00000331194 FSCBQ5H9T9 825 aa13.77□□□□□ -0.21
CCDC88C-201ENST00000331194 NXNQ6DKJ4 435 aa13.77□□□□□ -0.21
CCDC88C-201ENST00000331194 ZBTB33Q86T24 672 aa13.77□□□□□ -0.21
CCDC88C-201ENST00000331194 ALDH16A1Q8IZ83 802 aa13.77□□□□□ -0.21
CCDC88C-201ENST00000331194 SNX31Q8N9S9 440 aa13.77□□□□□ -0.21
CCDC88C-201ENST00000331194 FAM47BQ8NA70 645 aa13.77□□□□□ -0.21
CCDC88C-201ENST00000331194 DQX1Q8TE96 717 aaKnown RBP13.77□□□□□ -0.21
CCDC88C-201ENST00000331194 SERPINI1Q99574 410 aa13.77□□□□□ -0.21
CCDC88C-201ENST00000331194 KLC2Q9H0B6 622 aa13.77□□□□□ -0.21
CCDC88C-201ENST00000331194 CDH19Q9H159 772 aa13.77□□□□□ -0.21
CCDC88C-201ENST00000331194 TRPV6Q9H1D0 765 aa13.77□□□□□ -0.21
CCDC88C-201ENST00000331194 DHX33Q9H6R0 707 aaKnown RBP13.77□□□□□ -0.21
CCDC88C-201ENST00000331194 CYP26B1Q9NR63 512 aa13.77□□□□□ -0.21
CCDC88C-201ENST00000331194 C20orf96Q9NUD7 363 aaPredicted RBP13.77□□□□□ -0.21
CCDC88C-201ENST00000331194 MYRFQ9Y2G1 1151 aa13.77□□□□□ -0.21
CCDC88C-201ENST00000331194 PALM2-AKAP2B1ALY0 433 aaPredicted RBP13.76□□□□□ -0.21
CCDC88C-201ENST00000331194 CPA3P15088 417 aa13.76□□□□□ -0.21
CCDC88C-201ENST00000331194 DPEP1P16444 411 aa13.76□□□□□ -0.21
CCDC88C-201ENST00000331194 GABRB3P28472 473 aa13.76□□□□□ -0.21
CCDC88C-201ENST00000331194 TYK2P29597 1187 aa13.76□□□□□ -0.21
CCDC88C-201ENST00000331194 FGD3Q5JSP0 725 aa13.76□□□□□ -0.21
CCDC88C-201ENST00000331194 TRNP1Q6NT89 227 aa13.76□□□□□ -0.21
CCDC88C-201ENST00000331194 SWSAP1Q6NVH7 229 aa13.76□□□□□ -0.21
CCDC88C-201ENST00000331194 DCDC5Q6ZRR9 648 aa13.76□□□□□ -0.21
CCDC88C-201ENST00000331194 CROCCP3Q8IVE0 287 aa13.76□□□□□ -0.21
CCDC88C-201ENST00000331194 TDRD5Q8NAT2 981 aaKnown RBP13.76□□□□□ -0.21
CCDC88C-201ENST00000331194 RMND5BQ96G75 393 aaPredicted RBP13.76□□□□□ -0.21
CCDC88C-201ENST00000331194 FERMT1Q9BQL6 677 aa13.76□□□□□ -0.21
CCDC88C-201ENST00000331194 NEURL2Q9BR09 285 aa13.76□□□□□ -0.21
CCDC88C-201ENST00000331194 STN1Q9H668 368 aaKnown RBP13.76□□□□□ -0.21
CCDC88C-201ENST00000331194 NOL11Q9H8H0 719 aaKnown RBP13.76□□□□□ -0.21
CCDC88C-201ENST00000331194 CAB39LQ9H9S4 337 aa13.76□□□□□ -0.21
CCDC88C-201ENST00000331194 ADA2Q9NZK5 511 aa13.76□□□□□ -0.21
CCDC88C-201ENST00000331194 SEPT9Q9UHD8 586 aaPredicted RBP13.76□□□□□ -0.21
CCDC88C-201ENST00000331194 SFMBT1Q9UHJ3 866 aa13.76□□□□□ -0.21
CCDC88C-201ENST00000331194 UBIAD1Q9Y5Z9 338 aa13.76□□□□□ -0.21
CCDC88C-201ENST00000331194 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP13.76□□□□□ -0.21
CCDC88C-201ENST00000331194 GLRA3O75311 464 aa13.76□□□□□ -0.21
CCDC88C-201ENST00000331194 CLIC3O95833 236 aa13.76□□□□□ -0.21
CCDC88C-201ENST00000331194 ERVK-10P10266 1014 aa13.76□□□□□ -0.21
CCDC88C-201ENST00000331194 ME2P23368 584 aa13.76□□□□□ -0.21
CCDC88C-201ENST00000331194 HARS2P49590 506 aaKnown RBP13.76□□□□□ -0.21
CCDC88C-201ENST00000331194 IRF9Q00978 393 aa13.76□□□□□ -0.21
CCDC88C-201ENST00000331194 CREB5Q02930 508 aa13.76□□□□□ -0.21
CCDC88C-201ENST00000331194 BNIP3Q12983 259 aa13.76□□□□□ -0.21
CCDC88C-201ENST00000331194 CA9Q16790 459 aa13.76□□□□□ -0.21
CCDC88C-201ENST00000331194 MTERF2Q49AM1 385 aa13.76□□□□□ -0.21
CCDC88C-201ENST00000331194 CENPSQ8N2Z9 138 aa13.76□□□□□ -0.21
CCDC88C-201ENST00000331194 FIBCD1Q8N539 461 aa13.76□□□□□ -0.21
CCDC88C-201ENST00000331194 GFM2Q969S9 779 aaKnown RBP13.76□□□□□ -0.21
CCDC88C-201ENST00000331194 THAP11Q96EK4 314 aa13.76□□□□□ -0.21
CCDC88C-201ENST00000331194 BIRC8Q96P09 236 aa13.76□□□□□ -0.21
CCDC88C-201ENST00000331194 CEP41Q9BYV8 373 aa13.76□□□□□ -0.21
CCDC88C-201ENST00000331194 RSAD1Q9HA92 442 aa13.76□□□□□ -0.21
CCDC88C-201ENST00000331194 GMPR2Q9P2T1 348 aaKnown RBP13.76□□□□□ -0.21
CCDC88C-201ENST00000331194 MAGED2Q9UNF1 606 aaPredicted RBP13.76□□□□□ -0.21
CCDC88C-201ENST00000331194 PCDHA11Q9Y5I1 949 aa13.76□□□□□ -0.21
CCDC88C-201ENST00000331194 BRCA2P51587 3418 aa13.76□□□□□ -0.21
CCDC88C-201ENST00000331194 LOXHD1Q8IVV2 1947 aa13.75□□□□□ -0.21
CCDC88C-201ENST00000331194 RGSL1A5PLK6 1076 aa13.75□□□□□ -0.21
CCDC88C-201ENST00000331194 LRRIQ4A6NIV6 560 aa13.75□□□□□ -0.21
CCDC88C-201ENST00000331194 TCP10L2B9ZVM9 353 aa13.75□□□□□ -0.21
CCDC88C-201ENST00000331194 GLDCP23378 1020 aa13.75□□□□□ -0.21
CCDC88C-201ENST00000331194 IL4RP24394 825 aa13.75□□□□□ -0.21
CCDC88C-201ENST00000331194 EPHX2P34913 555 aa13.75□□□□□ -0.21
CCDC88C-201ENST00000331194 GRM5P41594 1212 aa13.75□□□□□ -0.21
CCDC88C-201ENST00000331194 OLIG2Q13516 323 aa13.75□□□□□ -0.21
CCDC88C-201ENST00000331194 CYP4V2Q6ZWL3 525 aaPredicted RBP13.75□□□□□ -0.21
CCDC88C-201ENST00000331194 GPR180Q86V85 440 aa13.75□□□□□ -0.21
CCDC88C-201ENST00000331194 XYLT1Q86Y38 959 aa13.75□□□□□ -0.21
CCDC88C-201ENST00000331194 CATSPER1Q8NEC5 780 aa13.75□□□□□ -0.21
CCDC88C-201ENST00000331194 RSPH1Q8WYR4 309 aa13.75□□□□□ -0.21
CCDC88C-201ENST00000331194 ZDHHC15Q96MV8 337 aa13.75□□□□□ -0.21
CCDC88C-201ENST00000331194 ZNHIT2Q9UHR6 403 aa13.75□□□□□ -0.21
CCDC88C-201ENST00000331194 RBMX2Q9Y388 322 aaKnown RBP13.75□□□□□ -0.21
CCDC88C-201ENST00000331194 TRIM17Q9Y577 477 aa13.75□□□□□ -0.21
CCDC88C-201ENST00000331194 ACOT8O14734 319 aa13.75□□□□□ -0.21
CCDC88C-201ENST00000331194 HDCP19113 662 aa13.75□□□□□ -0.21
CCDC88C-201ENST00000331194 RALGDSQ12967 914 aa13.75□□□□□ -0.21
CCDC88C-201ENST00000331194 GPR107Q5VW38 600 aa13.75□□□□□ -0.21
CCDC88C-201ENST00000331194 DHRS4L2Q6PKH6 230 aa13.75□□□□□ -0.21
CCDC88C-201ENST00000331194 GPR141Q7Z602 305 aa13.75□□□□□ -0.21
CCDC88C-201ENST00000331194 CARM1Q86X55 608 aa13.75□□□□□ -0.21
CCDC88C-201ENST00000331194 SPNS2Q8IVW8 549 aa13.75□□□□□ -0.21
CCDC88C-201ENST00000331194 PLEKHA8Q96JA3 519 aa13.75□□□□□ -0.21
CCDC88C-201ENST00000331194 DHRS1Q96LJ7 313 aa13.75□□□□□ -0.21
CCDC88C-201ENST00000331194 FRMD8P1Q9BZ68 369 aaPredicted RBP13.75□□□□□ -0.21
CCDC88C-201ENST00000331194 MOCS1Q9NZB8 636 aa13.75□□□□□ -0.21
CCDC88C-201ENST00000331194 YDJCA8MPS7 323 aa13.75□□□□□ -0.21
CCDC88C-201ENST00000331194 NRP1O14786 923 aa13.75□□□□□ -0.21
CCDC88C-201ENST00000331194 CBFA2T3O75081 653 aa13.75□□□□□ -0.21
CCDC88C-201ENST00000331194 LSM8O95777 96 aaKnown RBP13.75□□□□□ -0.21
CCDC88C-201ENST00000331194 ALDH2P05091 517 aa13.75□□□□□ -0.21
CCDC88C-201ENST00000331194 GSTT2P0CG29 244 aa13.75□□□□□ -0.21
CCDC88C-201ENST00000331194 GSTT2BP0CG30 244 aa13.75□□□□□ -0.21
CCDC88C-201ENST00000331194 MYL4P12829 197 aa13.75□□□□□ -0.21
CCDC88C-201ENST00000331194 UGT1A6P19224 532 aa13.75□□□□□ -0.21
CCDC88C-201ENST00000331194 UGT1A1P22309 533 aa13.75□□□□□ -0.21
CCDC88C-201ENST00000331194 UGT1A4P22310 534 aa13.75□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 43.9 ms