RNA–Protein interactions for RNA: ENST00000291074.9

VPS53-201, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS53, Length 2,656 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-201ENST00000291074 WDCPQ9H6R7 721 aa20.57■□□□□ 0.88
VPS53-201ENST00000291074 EBF2Q9HAK2 575 aa20.57■□□□□ 0.88
VPS53-201ENST00000291074 MCM8Q9UJA3 840 aa20.57■□□□□ 0.88
VPS53-201ENST00000291074 TTC3P53804 2025 aa20.57■□□□□ 0.88
VPS53-201ENST00000291074 B3GAT3O94766 335 aa20.56■□□□□ 0.88
VPS53-201ENST00000291074 FASTKD1Q53R41 847 aaKnown RBP20.56■□□□□ 0.88
VPS53-201ENST00000291074 ZNF669Q96BR6 464 aaPredicted RBP20.56■□□□□ 0.88
VPS53-201ENST00000291074 MLPHQ9BV36 600 aaPredicted RBP20.56■□□□□ 0.88
VPS53-201ENST00000291074 CADM1Q9BY67 442 aaKnown RBP20.56■□□□□ 0.88
VPS53-201ENST00000291074 OR12D3Q9UGF7 316 aa20.56■□□□□ 0.88
VPS53-201ENST00000291074 F8W810 466 aa20.56■□□□□ 0.88
VPS53-201ENST00000291074 LYPLA1O75608 230 aaPredicted RBP20.56■□□□□ 0.88
VPS53-201ENST00000291074 LRIG2O94898 1065 aa20.56■□□□□ 0.88
VPS53-201ENST00000291074 POLBP06746 335 aa20.56■□□□□ 0.88
VPS53-201ENST00000291074 KCNA4P22459 653 aa20.56■□□□□ 0.88
VPS53-201ENST00000291074 ABCG1P45844 678 aa20.56■□□□□ 0.88
VPS53-201ENST00000291074 AIF1P55008 147 aa20.56■□□□□ 0.88
VPS53-201ENST00000291074 RFWD3Q6PCD5 774 aa20.56■□□□□ 0.88
VPS53-201ENST00000291074 SERINC5Q86VE9 423 aa20.56■□□□□ 0.88
VPS53-201ENST00000291074 AZIN2Q96A70 460 aa20.56■□□□□ 0.88
VPS53-201ENST00000291074 PGAP3Q96FM1 320 aaPredicted RBP20.56■□□□□ 0.88
VPS53-201ENST00000291074 TACO1Q9BSH4 297 aaKnown RBP20.56■□□□□ 0.88
VPS53-201ENST00000291074 UBP1Q9NZI7 540 aa20.56■□□□□ 0.88
VPS53-201ENST00000291074 PADI3Q9ULW8 664 aa20.56■□□□□ 0.88
VPS53-201ENST00000291074 INPP5FQ9Y2H2 1132 aa20.56■□□□□ 0.88
VPS53-201ENST00000291074 GIT1Q9Y2X7 761 aa20.56■□□□□ 0.88
VPS53-201ENST00000291074 SNNO75324 88 aaPredicted RBP20.55■□□□□ 0.88
VPS53-201ENST00000291074 AP2A1O95782 977 aa20.55■□□□□ 0.88
VPS53-201ENST00000291074 RPSAP08865 295 aaKnown RBP20.55■□□□□ 0.88
VPS53-201ENST00000291074 CHRM1P11229 460 aaPredicted RBP20.55■□□□□ 0.88
VPS53-201ENST00000291074 NFKB1P19838 968 aa20.55■□□□□ 0.88
VPS53-201ENST00000291074 PCSK1P29120 753 aa20.55■□□□□ 0.88
VPS53-201ENST00000291074 THPOP40225 353 aa20.55■□□□□ 0.88
VPS53-201ENST00000291074 PDE1BQ01064 536 aa20.55■□□□□ 0.88
VPS53-201ENST00000291074 MGAT3Q09327 533 aa20.55■□□□□ 0.88
VPS53-201ENST00000291074 CRHR2Q13324 411 aa20.55■□□□□ 0.88
VPS53-201ENST00000291074 ARL13BQ3SXY8 428 aa20.55■□□□□ 0.88
VPS53-201ENST00000291074 PDZD4Q76G19 769 aaPredicted RBP20.55■□□□□ 0.88
VPS53-201ENST00000291074 CCDC91Q7Z6B0 441 aa20.55■□□□□ 0.88
VPS53-201ENST00000291074 CCNJLQ8IV13 435 aa20.55■□□□□ 0.88
VPS53-201ENST00000291074 DNAAF3Q8N9W5 541 aa20.55■□□□□ 0.88
VPS53-201ENST00000291074 TTC8Q8TAM2 541 aa20.55■□□□□ 0.88
VPS53-201ENST00000291074 NSL1Q96IY1 281 aa20.55■□□□□ 0.88
VPS53-201ENST00000291074 ARHGAP39Q9C0H5 1083 aa20.55■□□□□ 0.88
VPS53-201ENST00000291074 CHST12Q9NRB3 414 aa20.55■□□□□ 0.88
VPS53-201ENST00000291074 HBS1LQ9Y450 684 aaKnown RBP20.55■□□□□ 0.88
VPS53-201ENST00000291074 PEX11AO75192 247 aa20.55■□□□□ 0.88
VPS53-201ENST00000291074 CXCR3P49682 368 aa20.55■□□□□ 0.88
VPS53-201ENST00000291074 AQP5P55064 265 aa20.55■□□□□ 0.88
VPS53-201ENST00000291074 TRIM32Q13049 653 aa20.55■□□□□ 0.88
VPS53-201ENST00000291074 STX3Q13277 289 aa20.55■□□□□ 0.88
VPS53-201ENST00000291074 CERCAMQ5T4B2 595 aa20.55■□□□□ 0.88
VPS53-201ENST00000291074 RINLQ6ZS11 566 aa20.55■□□□□ 0.88
VPS53-201ENST00000291074 CMC1Q7Z7K0 106 aa20.55■□□□□ 0.88
VPS53-201ENST00000291074 DENND2DQ9H6A0 471 aaPredicted RBP20.55■□□□□ 0.88
VPS53-201ENST00000291074 TLE6Q9H808 572 aa20.55■□□□□ 0.88
VPS53-201ENST00000291074 KCNK4Q9NYG8 393 aa20.55■□□□□ 0.88
VPS53-201ENST00000291074 NOP53Q9NZM5 478 aaKnown RBP20.55■□□□□ 0.88
VPS53-201ENST00000291074 VANGL2Q9ULK5 521 aa20.55■□□□□ 0.88
VPS53-201ENST00000291074 HTTP42858 3142 aa20.55■□□□□ 0.88
VPS53-201ENST00000291074 ITM2AO43736 263 aa20.54■□□□□ 0.88
VPS53-201ENST00000291074 WFS1O76024 890 aa20.54■□□□□ 0.88
VPS53-201ENST00000291074 CPA2P48052 419 aa20.54■□□□□ 0.88
VPS53-201ENST00000291074 LRRTM3Q86VH5 581 aa20.54■□□□□ 0.88
VPS53-201ENST00000291074 CRLF3Q8IUI8 442 aa20.54■□□□□ 0.88
VPS53-201ENST00000291074 OR10T2Q8NGX3 314 aa20.54■□□□□ 0.88
VPS53-201ENST00000291074 SCAMP5Q8TAC9 235 aa20.54■□□□□ 0.88
VPS53-201ENST00000291074 KCNV2Q8TDN2 545 aa20.54■□□□□ 0.88
VPS53-201ENST00000291074 TRIB2Q92519 343 aa20.54■□□□□ 0.88
VPS53-201ENST00000291074 AGAP2Q99490 1192 aa20.54■□□□□ 0.88
VPS53-201ENST00000291074 NAT9Q9BTE0 207 aa20.54■□□□□ 0.88
VPS53-201ENST00000291074 CSNK1G1Q9HCP0 422 aa20.54■□□□□ 0.88
VPS53-201ENST00000291074 ZNF358Q9NW07 568 aa20.54■□□□□ 0.88
VPS53-201ENST00000291074 BIRC5O15392 142 aa20.54■□□□□ 0.88
VPS53-201ENST00000291074 ATP9BO43861 1147 aa20.54■□□□□ 0.88
VPS53-201ENST00000291074 DIAPH2O60879 1101 aa20.54■□□□□ 0.88
VPS53-201ENST00000291074 ENTPD5O75356 428 aa20.54■□□□□ 0.88
VPS53-201ENST00000291074 PRKCGP05129 697 aa20.54■□□□□ 0.88
VPS53-201ENST00000291074 ITGB1P05556 798 aa20.54■□□□□ 0.88
VPS53-201ENST00000291074 ODC1P11926 461 aa20.54■□□□□ 0.88
VPS53-201ENST00000291074 CYBAP13498 195 aa20.54■□□□□ 0.88
VPS53-201ENST00000291074 GARSP41250 739 aaKnown RBP20.54■□□□□ 0.88
VPS53-201ENST00000291074 HCAR3P49019 387 aa20.54■□□□□ 0.88
VPS53-201ENST00000291074 MBLAC2Q68D91 279 aa20.54■□□□□ 0.88
VPS53-201ENST00000291074 KYAT3Q6YP21 454 aaKnown RBP20.54■□□□□ 0.88
VPS53-201ENST00000291074 PPP1R14CQ8TAE6 165 aa20.54■□□□□ 0.88
VPS53-201ENST00000291074 NSMCE1Q8WV22 266 aa20.54■□□□□ 0.88
VPS53-201ENST00000291074 RNF34Q969K3 372 aa20.54■□□□□ 0.88
VPS53-201ENST00000291074 EPAS1Q99814 870 aa20.54■□□□□ 0.88
VPS53-201ENST00000291074 TXNDC16Q9P2K2 825 aa20.54■□□□□ 0.88
VPS53-201ENST00000291074 PPARGC1AQ9UBK2 798 aaKnown RBP20.54■□□□□ 0.88
VPS53-201ENST00000291074 C15orf41Q9Y2V0 281 aa20.54■□□□□ 0.88
VPS53-201ENST00000291074 PLIN3O60664 434 aa20.53■□□□□ 0.88
VPS53-201ENST00000291074 GLRA3O75311 464 aa20.53■□□□□ 0.88
VPS53-201ENST00000291074 TPH1P17752 444 aa20.53■□□□□ 0.88
VPS53-201ENST00000291074 YY1P25490 414 aa20.53■□□□□ 0.88
VPS53-201ENST00000291074 RPL9P32969 192 aaKnown RBP20.53■□□□□ 0.88
VPS53-201ENST00000291074 GALNT2Q10471 571 aa20.53■□□□□ 0.88
VPS53-201ENST00000291074 SPANXN3Q5MJ09 141 aa20.53■□□□□ 0.88
VPS53-201ENST00000291074 CD300LGQ6UXG3 332 aa20.53■□□□□ 0.88
Retrieved 100 of 20,778 RNA–protein pairs in 23.3 ms