RNA–Protein interactions for RNA: ENST00000262396.10

TRAF4-202, Transcript of TNF receptor associated factor 4, humanhuman

TSL 1 (best) BASIC

Gene TRAF4, Length 683 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRAF4-202ENST00000262396 RPL10LQ96L21 214 aaKnown RBP12.66□□□□□ -0.38
TRAF4-202ENST00000262396 PRICKLE1Q96MT3 831 aaPredicted RBP12.66□□□□□ -0.38
TRAF4-202ENST00000262396 KREMEN1Q96MU8 473 aa12.66□□□□□ -0.38
TRAF4-202ENST00000262396 ZSWIM1Q9BR11 485 aa12.66□□□□□ -0.38
TRAF4-202ENST00000262396 RSPH9Q9H1X1 276 aaPredicted RBP12.66□□□□□ -0.38
TRAF4-202ENST00000262396 DDIT4Q9NX09 232 aa12.66□□□□□ -0.38
TRAF4-202ENST00000262396 RALYQ9UKM9 306 aaKnown RBP12.66□□□□□ -0.38
TRAF4-202ENST00000262396 PCDHGB2Q9Y5G2 931 aa12.66□□□□□ -0.38
TRAF4-202ENST00000262396 TNRC6BQ9UPQ9 1833 aaKnown RBP12.66□□□□□ -0.38
TRAF4-202ENST00000262396 CEP295Q9C0D2 2601 aa12.66□□□□□ -0.38
TRAF4-202ENST00000262396 TBC1D3DA0A087WVF3 549 aa12.65□□□□□ -0.38
TRAF4-202ENST00000262396 TBC1D3IA0A087WXS9 549 aa12.65□□□□□ -0.38
TRAF4-202ENST00000262396 TBC1D3EA0A087X179 549 aa12.65□□□□□ -0.38
TRAF4-202ENST00000262396 TBC1D3KA0A087X1G2 549 aa12.65□□□□□ -0.38
TRAF4-202ENST00000262396 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP12.65□□□□□ -0.38
TRAF4-202ENST00000262396 TBC1D3FA6NER0 549 aaPredicted RBP12.65□□□□□ -0.38
TRAF4-202ENST00000262396 TTC34A8MYJ7 566 aa12.65□□□□□ -0.38
TRAF4-202ENST00000262396 TBC1D3LB9A6J9 549 aa12.65□□□□□ -0.38
TRAF4-202ENST00000262396 BNIP3LO60238 219 aa12.65□□□□□ -0.38
TRAF4-202ENST00000262396 ADH1BP00325 375 aa12.65□□□□□ -0.38
TRAF4-202ENST00000262396 ITGAVP06756 1048 aa12.65□□□□□ -0.38
TRAF4-202ENST00000262396 TBC1D3HP0C7X1 549 aa12.65□□□□□ -0.38
TRAF4-202ENST00000262396 PDGFRAP16234 1089 aa12.65□□□□□ -0.38
TRAF4-202ENST00000262396 CCR1P32246 355 aa12.65□□□□□ -0.38
TRAF4-202ENST00000262396 RACK1P63244 317 aaKnown RBP12.65□□□□□ -0.38
TRAF4-202ENST00000262396 SCAPQ12770 1279 aa12.65□□□□□ -0.38
TRAF4-202ENST00000262396 MTA1Q13330 715 aa12.65□□□□□ -0.38
TRAF4-202ENST00000262396 ZNF177Q13360 481 aaPredicted RBP12.65□□□□□ -0.38
TRAF4-202ENST00000262396 SLC12A1Q13621 1099 aa12.65□□□□□ -0.38
TRAF4-202ENST00000262396 CAMK4Q16566 473 aa12.65□□□□□ -0.38
TRAF4-202ENST00000262396 EXOC3L4Q17RC7 722 aa12.65□□□□□ -0.38
TRAF4-202ENST00000262396 TTC39BQ5VTQ0 682 aaPredicted RBP12.65□□□□□ -0.38
TRAF4-202ENST00000262396 SYPL2Q5VXT5 272 aa12.65□□□□□ -0.38
TRAF4-202ENST00000262396 TBC1D3GQ6DHY5 549 aa12.65□□□□□ -0.38
TRAF4-202ENST00000262396 TBC1D3CQ6IPX1 549 aa12.65□□□□□ -0.38
TRAF4-202ENST00000262396 NCEH1Q6PIU2 408 aa12.65□□□□□ -0.38
TRAF4-202ENST00000262396 FOXR2Q6PJQ5 311 aa12.65□□□□□ -0.38
TRAF4-202ENST00000262396 LAYNQ6UX15 382 aa12.65□□□□□ -0.38
TRAF4-202ENST00000262396 TBC1D3Q8IZP1 549 aaPredicted RBP12.65□□□□□ -0.38
TRAF4-202ENST00000262396 GALNT15Q8N3T1 639 aa12.65□□□□□ -0.38
TRAF4-202ENST00000262396 KDM1BQ8NB78 822 aa12.65□□□□□ -0.38
TRAF4-202ENST00000262396 OR2T34Q8NGX1 318 aa12.65□□□□□ -0.38
TRAF4-202ENST00000262396 LMO3Q8TAP4 145 aa12.65□□□□□ -0.38
TRAF4-202ENST00000262396 PPP1R13BQ96KQ4 1090 aa12.65□□□□□ -0.38
TRAF4-202ENST00000262396 RPRD1AQ96P16 312 aaPredicted RBP12.65□□□□□ -0.38
TRAF4-202ENST00000262396 NEUROG2Q9H2A3 272 aa12.65□□□□□ -0.38
TRAF4-202ENST00000262396 FTSJ1Q9UET6 329 aa12.65□□□□□ -0.38
TRAF4-202ENST00000262396 LHX6Q9UPM6 363 aa12.65□□□□□ -0.38
TRAF4-202ENST00000262396 FARP1Q9Y4F1 1045 aaPredicted RBP12.65□□□□□ -0.38
TRAF4-202ENST00000262396 KCNU1A8MYU2 1149 aa12.64□□□□□ -0.39
TRAF4-202ENST00000262396 PAPSS1O43252 624 aaPredicted RBP12.64□□□□□ -0.39
TRAF4-202ENST00000262396 GADD45BO75293 160 aaPredicted RBP12.64□□□□□ -0.39
TRAF4-202ENST00000262396 GRAP2O75791 330 aa12.64□□□□□ -0.39
TRAF4-202ENST00000262396 GABBR2O75899 941 aa12.64□□□□□ -0.39
TRAF4-202ENST00000262396 C5AR1P21730 350 aa12.64□□□□□ -0.39
TRAF4-202ENST00000262396 CTSOP43234 321 aaPredicted RBP12.64□□□□□ -0.39
TRAF4-202ENST00000262396 GALCP54803 685 aa12.64□□□□□ -0.39
TRAF4-202ENST00000262396 PDCLQ13371 301 aa12.64□□□□□ -0.39
TRAF4-202ENST00000262396 MEA1Q16626 185 aa12.64□□□□□ -0.39
TRAF4-202ENST00000262396 FSCBQ5H9T9 825 aa12.64□□□□□ -0.39
TRAF4-202ENST00000262396 FAM46CQ5VWP2 391 aa12.64□□□□□ -0.39
TRAF4-202ENST00000262396 GJB7Q6PEY0 223 aa12.64□□□□□ -0.39
TRAF4-202ENST00000262396 RAB11FIP1Q6WKZ4 1283 aaPredicted RBP12.64□□□□□ -0.39
TRAF4-202ENST00000262396 BEND5Q7L4P6 421 aa12.64□□□□□ -0.39
TRAF4-202ENST00000262396 PRPF39Q86UA1 669 aaKnown RBP12.64□□□□□ -0.39
TRAF4-202ENST00000262396 FAM114A1Q8IWE2 563 aa12.64□□□□□ -0.39
TRAF4-202ENST00000262396 DEFB106AQ8N104 65 aa12.64□□□□□ -0.39
TRAF4-202ENST00000262396 STK40Q8N2I9 435 aa12.64□□□□□ -0.39
TRAF4-202ENST00000262396 OR8D1Q8WZ84 308 aa12.64□□□□□ -0.39
TRAF4-202ENST00000262396 SLC39A13Q96H72 371 aa12.64□□□□□ -0.39
TRAF4-202ENST00000262396 SERAC1Q96JX3 654 aa12.64□□□□□ -0.39
TRAF4-202ENST00000262396 SLC6A18Q96N87 628 aa12.64□□□□□ -0.39
TRAF4-202ENST00000262396 SLC4A5Q9BY07 1137 aa12.64□□□□□ -0.39
TRAF4-202ENST00000262396 OSGEPQ9NPF4 335 aa12.64□□□□□ -0.39
TRAF4-202ENST00000262396 GDF3Q9NR23 364 aa12.64□□□□□ -0.39
TRAF4-202ENST00000262396 APEX2Q9UBZ4 518 aa12.64□□□□□ -0.39
TRAF4-202ENST00000262396 RWDD2AQ9UIY3 292 aa12.64□□□□□ -0.39
TRAF4-202ENST00000262396 FZD4Q9ULV1 537 aa12.64□□□□□ -0.39
TRAF4-202ENST00000262396 KMT2BQ9UMN6 2715 aaPredicted RBP12.63□□□□□ -0.39
TRAF4-202ENST00000262396 A0A1B0GVM2 712 aa12.63□□□□□ -0.39
TRAF4-202ENST00000262396 A0A1W2PPC4 97 aa12.63□□□□□ -0.39
TRAF4-202ENST00000262396 TCAF2A6NFQ2 919 aa12.63□□□□□ -0.39
TRAF4-202ENST00000262396 C1QTNF3-AMACRE9PGA6 284 aa12.63□□□□□ -0.39
TRAF4-202ENST00000262396 H0Y8X5 98 aa12.63□□□□□ -0.39
TRAF4-202ENST00000262396 TNFSF14O43557 240 aa12.63□□□□□ -0.39
TRAF4-202ENST00000262396 HSF2BPO75031 334 aa12.63□□□□□ -0.39
TRAF4-202ENST00000262396 FYNP06241 537 aa12.63□□□□□ -0.39
TRAF4-202ENST00000262396 GLI1P08151 1106 aa12.63□□□□□ -0.39
TRAF4-202ENST00000262396 ATXN1LP0C7T5 689 aaKnown RBP12.63□□□□□ -0.39
TRAF4-202ENST00000262396 GOT1P17174 413 aa12.63□□□□□ -0.39
TRAF4-202ENST00000262396 BMP6P22004 513 aa12.63□□□□□ -0.39
TRAF4-202ENST00000262396 CD38P28907 300 aa12.63□□□□□ -0.39
TRAF4-202ENST00000262396 ARRB1P49407 418 aaPredicted RBP12.63□□□□□ -0.39
TRAF4-202ENST00000262396 MARSP56192 900 aaKnown RBP12.63□□□□□ -0.39
TRAF4-202ENST00000262396 RNASE9P60153 205 aaKnown RBP12.63□□□□□ -0.39
TRAF4-202ENST00000262396 BNC1Q01954 994 aa12.63□□□□□ -0.39
TRAF4-202ENST00000262396 ELAVL3Q14576 367 aaKnown RBP12.63□□□□□ -0.39
TRAF4-202ENST00000262396 HS1BP3Q53T59 392 aa12.63□□□□□ -0.39
TRAF4-202ENST00000262396 C9orf64Q5T6V5 341 aa12.63□□□□□ -0.39
TRAF4-202ENST00000262396 TRIM65Q6PJ69 517 aa12.63□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 20.1 ms