RNA–Protein interactions for RNA: ENST00000253024.9

TRIM28-201, Transcript of tripartite motif containing 28, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TRIM28, Length 2,960 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-201ENST00000253024 CTSHP09668 335 aa21.84■■□□□ 1.09
TRIM28-201ENST00000253024 CCNFP41002 786 aa21.84■■□□□ 1.09
TRIM28-201ENST00000253024 MATKP42679 507 aa21.84■■□□□ 1.09
TRIM28-201ENST00000253024 CCNG1P51959 295 aa21.84■■□□□ 1.09
TRIM28-201ENST00000253024 SLC9B1Q4ZJI4 515 aa21.84■■□□□ 1.09
TRIM28-201ENST00000253024 B3GALNT2Q8NCR0 500 aa21.84■■□□□ 1.09
TRIM28-201ENST00000253024 MROH8Q9H579 483 aa21.84■■□□□ 1.09
TRIM28-201ENST00000253024 SP100P23497 879 aaPredicted RBP21.84■■□□□ 1.09
TRIM28-201ENST00000253024 C6orf163Q5TEZ5 329 aa21.84■■□□□ 1.09
TRIM28-201ENST00000253024 OTUD1Q5VV17 481 aaPredicted RBP21.84■■□□□ 1.09
TRIM28-201ENST00000253024 KIAA0319Q5VV43 1072 aa21.84■■□□□ 1.09
TRIM28-201ENST00000253024 NXNQ6DKJ4 435 aa21.84■■□□□ 1.09
TRIM28-201ENST00000253024 RWDD4Q6NW29 188 aaKnown RBP21.84■■□□□ 1.09
TRIM28-201ENST00000253024 OTOP3Q7RTS5 596 aa21.84■■□□□ 1.09
TRIM28-201ENST00000253024 RNF34Q969K3 372 aa21.84■■□□□ 1.09
TRIM28-201ENST00000253024 SLC10A4Q96EP9 437 aa21.84■■□□□ 1.09
TRIM28-201ENST00000253024 CERS2Q96G23 380 aa21.84■■□□□ 1.09
TRIM28-201ENST00000253024 OMDQ99983 421 aa21.84■■□□□ 1.09
TRIM28-201ENST00000253024 DDIT4Q9NX09 232 aa21.84■■□□□ 1.09
TRIM28-201ENST00000253024 CORO1CQ9ULV4 474 aaPredicted RBP21.84■■□□□ 1.09
TRIM28-201ENST00000253024 CLEC11AQ9Y240 323 aa21.84■■□□□ 1.09
TRIM28-201ENST00000253024 PRKCGP05129 697 aa21.83■■□□□ 1.09
TRIM28-201ENST00000253024 TSHRP16473 764 aa21.83■■□□□ 1.09
TRIM28-201ENST00000253024 TCN1P20061 433 aaPredicted RBP21.83■■□□□ 1.09
TRIM28-201ENST00000253024 IDH3AP50213 366 aa21.83■■□□□ 1.09
TRIM28-201ENST00000253024 PDPK2PQ6A1A2 396 aa21.83■■□□□ 1.09
TRIM28-201ENST00000253024 NOTUMQ6P988 496 aa21.83■■□□□ 1.09
TRIM28-201ENST00000253024 SPATA22Q8NHS9 363 aa21.83■■□□□ 1.09
TRIM28-201ENST00000253024 SORT1Q99523 831 aa21.83■■□□□ 1.09
TRIM28-201ENST00000253024 C20orf96Q9NUD7 363 aaPredicted RBP21.83■■□□□ 1.09
TRIM28-201ENST00000253024 NDE1Q9NXR1 346 aa21.83■■□□□ 1.09
TRIM28-201ENST00000253024 PTPRFP10586 1907 aa21.83■■□□□ 1.08
TRIM28-201ENST00000253024 SKIP12755 728 aa21.83■■□□□ 1.08
TRIM28-201ENST00000253024 TMEM198Q66K66 360 aa21.83■■□□□ 1.08
TRIM28-201ENST00000253024 FSTL4Q6MZW2 842 aa21.83■■□□□ 1.08
TRIM28-201ENST00000253024 ZNF280DQ6N043 979 aa21.83■■□□□ 1.08
TRIM28-201ENST00000253024 FRMD7Q6ZUT3 714 aa21.83■■□□□ 1.08
TRIM28-201ENST00000253024 RPS27LQ71UM5 84 aaKnown RBP21.83■■□□□ 1.08
TRIM28-201ENST00000253024 TRIM42Q8IWZ5 723 aa21.83■■□□□ 1.08
TRIM28-201ENST00000253024 PAAF1Q9BRP4 392 aa21.83■■□□□ 1.08
TRIM28-201ENST00000253024 NFKBIZQ9BYH8 718 aa21.83■■□□□ 1.08
TRIM28-201ENST00000253024 STX18Q9P2W9 335 aaKnown RBP21.83■■□□□ 1.08
TRIM28-201ENST00000253024 HTTP42858 3142 aa21.83■■□□□ 1.08
TRIM28-201ENST00000253024 CXCL11O14625 94 aa21.82■■□□□ 1.08
TRIM28-201ENST00000253024 TM7SF2O76062 418 aa21.82■■□□□ 1.08
TRIM28-201ENST00000253024 JCHAINP01591 159 aa21.82■■□□□ 1.08
TRIM28-201ENST00000253024 LMNAP02545 664 aaKnown RBP21.82■■□□□ 1.08
TRIM28-201ENST00000253024 TPSB2P20231 275 aa21.82■■□□□ 1.08
TRIM28-201ENST00000253024 EPHA3P29320 983 aa21.82■■□□□ 1.08
TRIM28-201ENST00000253024 TPSAB1Q15661 275 aa21.82■■□□□ 1.08
TRIM28-201ENST00000253024 SCYL1Q96KG9 808 aa21.82■■□□□ 1.08
TRIM28-201ENST00000253024 OR52B2Q96RD2 323 aa21.82■■□□□ 1.08
TRIM28-201ENST00000253024 A0A088AWK7 358 aa21.82■■□□□ 1.08
TRIM28-201ENST00000253024 SMIM10L2AP0DMW4 78 aa21.82■■□□□ 1.08
TRIM28-201ENST00000253024 SMIM10L2BP0DMW5 78 aa21.82■■□□□ 1.08
TRIM28-201ENST00000253024 CPA3P15088 417 aa21.82■■□□□ 1.08
TRIM28-201ENST00000253024 ACADSP16219 412 aa21.82■■□□□ 1.08
TRIM28-201ENST00000253024 ZBTB17Q13105 803 aa21.82■■□□□ 1.08
TRIM28-201ENST00000253024 ARHGAP36Q6ZRI8 547 aa21.82■■□□□ 1.08
TRIM28-201ENST00000253024 ARHGAP24Q8N264 748 aa21.82■■□□□ 1.08
TRIM28-201ENST00000253024 TUBB6Q9BUF5 446 aa21.82■■□□□ 1.08
TRIM28-201ENST00000253024 COPG2Q9UBF2 871 aa21.82■■□□□ 1.08
TRIM28-201ENST00000253024 MKI67P46013 3256 aaKnown RBP21.82■■□□□ 1.08
TRIM28-201ENST00000253024 A0A096LPK6 155 aa21.81■■□□□ 1.08
TRIM28-201ENST00000253024 MYBPHLA2RUH7 354 aa21.81■■□□□ 1.08
TRIM28-201ENST00000253024 KLF11O14901 512 aa21.81■■□□□ 1.08
TRIM28-201ENST00000253024 ZBTB14O43829 449 aa21.81■■□□□ 1.08
TRIM28-201ENST00000253024 POLBP06746 335 aa21.81■■□□□ 1.08
TRIM28-201ENST00000253024 SERPINA6P08185 405 aa21.81■■□□□ 1.08
TRIM28-201ENST00000253024 MPSTP25325 297 aa21.81■■□□□ 1.08
TRIM28-201ENST00000253024 PTPN9P43378 593 aa21.81■■□□□ 1.08
TRIM28-201ENST00000253024 LILRA4P59901 499 aa21.81■■□□□ 1.08
TRIM28-201ENST00000253024 ITGA7Q13683 1181 aa21.81■■□□□ 1.08
TRIM28-201ENST00000253024 USP13Q92995 863 aaPredicted RBP21.81■■□□□ 1.08
TRIM28-201ENST00000253024 APBA2Q99767 749 aa21.81■■□□□ 1.08
TRIM28-201ENST00000253024 ADAMTS10Q9H324 1103 aa21.81■■□□□ 1.08
TRIM28-201ENST00000253024 COG4Q9H9E3 785 aa21.81■■□□□ 1.08
TRIM28-201ENST00000253024 VANGL2Q9ULK5 521 aa21.81■■□□□ 1.08
TRIM28-201ENST00000253024 USP3Q9Y6I4 520 aa21.81■■□□□ 1.08
TRIM28-201ENST00000253024 WDR90Q96KV7 1748 aa21.81■■□□□ 1.08
TRIM28-201ENST00000253024 A6NHS1 94 aa21.81■■□□□ 1.08
TRIM28-201ENST00000253024 PALM2-AKAP2B1ALY0 433 aaPredicted RBP21.81■■□□□ 1.08
TRIM28-201ENST00000253024 KIF1CO43896 1103 aaKnown RBP21.81■■□□□ 1.08
TRIM28-201ENST00000253024 MT-CYBP00156 380 aaPredicted RBP21.81■■□□□ 1.08
TRIM28-201ENST00000253024 MT-CO1P00395 513 aa21.81■■□□□ 1.08
TRIM28-201ENST00000253024 NFKB1P19838 968 aa21.81■■□□□ 1.08
TRIM28-201ENST00000253024 TPI1P60174 286 aa21.81■■□□□ 1.08
TRIM28-201ENST00000253024 NIPAL4Q0D2K0 466 aa21.81■■□□□ 1.08
TRIM28-201ENST00000253024 SLC25A52Q3SY17 297 aa21.81■■□□□ 1.08
TRIM28-201ENST00000253024 RNF135Q8IUD6 432 aa21.81■■□□□ 1.08
TRIM28-201ENST00000253024 ZNF184Q99676 751 aaPredicted RBP21.81■■□□□ 1.08
TRIM28-201ENST00000253024 SOX13Q9UN79 622 aa21.81■■□□□ 1.08
TRIM28-201ENST00000253024 PPME1Q9Y570 386 aa21.81■■□□□ 1.08
TRIM28-201ENST00000253024 SHROOM3Q8TF72 1996 aa21.81■■□□□ 1.08
TRIM28-201ENST00000253024 CASTOR2A6NHX0 329 aa21.81■■□□□ 1.08
TRIM28-201ENST00000253024 HNRNPCL1O60812 293 aaKnown RBP21.81■■□□□ 1.08
TRIM28-201ENST00000253024 GLRA3O75311 464 aa21.81■■□□□ 1.08
TRIM28-201ENST00000253024 PGAM1P18669 254 aa21.81■■□□□ 1.08
TRIM28-201ENST00000253024 ASPHQ12797 758 aa21.81■■□□□ 1.08
TRIM28-201ENST00000253024 POU6F1Q14863 301 aa21.81■■□□□ 1.08
Retrieved 100 of 20,778 RNA–protein pairs in 30.4 ms