RNA–Protein interactions for RNA: ENST00000637988.1

SCN1A-217, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS P3 TSL 5 BASIC

Gene SCN1A, Length 8,562 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-217ENST00000637988 LY6KQ17RY6 165 aa6.26□□□□□ -1.41
SCN1A-217ENST00000637988 TFDP3Q5H9I0 405 aa6.26□□□□□ -1.41
SCN1A-217ENST00000637988 DUS1LQ6P1R4 473 aaKnown RBP6.26□□□□□ -1.41
SCN1A-217ENST00000637988 HEXDCQ8WVB3 486 aa6.26□□□□□ -1.41
SCN1A-217ENST00000637988 SLC38A3Q99624 504 aa6.26□□□□□ -1.41
SCN1A-217ENST00000637988 EPS8L2Q9H6S3 715 aa6.26□□□□□ -1.41
SCN1A-217ENST00000637988 MARCH2Q9P0N8 246 aa6.26□□□□□ -1.41
SCN1A-217ENST00000637988 EDARQ9UNE0 448 aa6.26□□□□□ -1.41
SCN1A-217ENST00000637988 TAF6LQ9Y6J9 622 aa6.26□□□□□ -1.41
SCN1A-217ENST00000637988 PEX12O00623 359 aa6.26□□□□□ -1.41
SCN1A-217ENST00000637988 INSRRP14616 1297 aa6.26□□□□□ -1.41
SCN1A-217ENST00000637988 AGXTP21549 392 aa6.26□□□□□ -1.41
SCN1A-217ENST00000637988 TUBP50607 506 aa6.26□□□□□ -1.41
SCN1A-217ENST00000637988 CSNK2BP67870 215 aa6.26□□□□□ -1.41
SCN1A-217ENST00000637988 KLC1Q07866 573 aa6.26□□□□□ -1.41
SCN1A-217ENST00000637988 CASP12Q6UXS9 341 aa6.26□□□□□ -1.41
SCN1A-217ENST00000637988 PPIL6Q8IXY8 311 aa6.26□□□□□ -1.41
SCN1A-217ENST00000637988 LIX1Q8N485 282 aa6.26□□□□□ -1.41
SCN1A-217ENST00000637988 HJURPQ8NCD3 748 aaPredicted RBP6.26□□□□□ -1.41
SCN1A-217ENST00000637988 PHC3Q8NDX5 983 aa6.26□□□□□ -1.41
SCN1A-217ENST00000637988 OR10G6Q8NH81 332 aa6.26□□□□□ -1.41
SCN1A-217ENST00000637988 DENND1AQ8TEH3 1009 aa6.26□□□□□ -1.41
SCN1A-217ENST00000637988 LRRC39Q96DD0 335 aa6.26□□□□□ -1.41
SCN1A-217ENST00000637988 MTERF3Q96E29 417 aa6.26□□□□□ -1.41
SCN1A-217ENST00000637988 OLFM1Q99784 485 aa6.26□□□□□ -1.41
SCN1A-217ENST00000637988 SH2D3AQ9BRG2 576 aa6.26□□□□□ -1.41
SCN1A-217ENST00000637988 PI4K2AQ9BTU6 479 aa6.26□□□□□ -1.41
SCN1A-217ENST00000637988 SERHL2Q9H4I8 314 aa6.26□□□□□ -1.41
SCN1A-217ENST00000637988 OSBPL3Q9H4L5 887 aa6.26□□□□□ -1.41
SCN1A-217ENST00000637988 SLC32A1Q9H598 525 aa6.26□□□□□ -1.41
SCN1A-217ENST00000637988 SERHLQ9NQF3 203 aa6.26□□□□□ -1.41
SCN1A-217ENST00000637988 EIF4ENIF1Q9NRA8 985 aaKnown RBP6.26□□□□□ -1.41
SCN1A-217ENST00000637988 ARHGAP28Q9P2N2 729 aa6.26□□□□□ -1.41
SCN1A-217ENST00000637988 MYH3P11055 1940 aa6.26□□□□□ -1.41
SCN1A-217ENST00000637988 A0A0J9YVX5 310 aa6.26□□□□□ -1.41
SCN1A-217ENST00000637988 ERCC1P07992 297 aaPredicted RBP6.26□□□□□ -1.41
SCN1A-217ENST00000637988 ME2P23368 584 aa6.26□□□□□ -1.41
SCN1A-217ENST00000637988 AKT2P31751 481 aa6.26□□□□□ -1.41
SCN1A-217ENST00000637988 HSPA9P38646 679 aaKnown RBP6.26□□□□□ -1.41
SCN1A-217ENST00000637988 TRIM28Q13263 835 aaKnown RBP6.26□□□□□ -1.41
SCN1A-217ENST00000637988 WLSQ5T9L3 541 aa6.26□□□□□ -1.41
SCN1A-217ENST00000637988 SLC35G2Q8TBE7 412 aa6.26□□□□□ -1.41
SCN1A-217ENST00000637988 CAPNS2Q96L46 248 aa6.26□□□□□ -1.41
SCN1A-217ENST00000637988 ILKAPQ9H0C8 392 aaPredicted RBP6.26□□□□□ -1.41
SCN1A-217ENST00000637988 TAF1DQ9H5J8 278 aaPredicted RBP6.26□□□□□ -1.41
SCN1A-217ENST00000637988 LDAHQ9H6V9 325 aa6.26□□□□□ -1.41
SCN1A-217ENST00000637988 MANSC1Q9H8J5 431 aa6.26□□□□□ -1.41
SCN1A-217ENST00000637988 IL1RL2Q9HB29 575 aa6.26□□□□□ -1.41
SCN1A-217ENST00000637988 POLD4Q9HCU8 107 aa6.26□□□□□ -1.41
SCN1A-217ENST00000637988 DDX28Q9NUL7 540 aaKnown RBP6.26□□□□□ -1.41
SCN1A-217ENST00000637988 SH3GLB1Q9Y371 365 aa6.26□□□□□ -1.41
SCN1A-217ENST00000637988 CES2O00748 559 aa6.26□□□□□ -1.41
SCN1A-217ENST00000637988 PHF2O75151 1096 aa6.26□□□□□ -1.41
SCN1A-217ENST00000637988 LDOC1O95751 146 aaPredicted RBP6.26□□□□□ -1.41
SCN1A-217ENST00000637988 PIM1P11309 404 aaPredicted RBP6.26□□□□□ -1.41
SCN1A-217ENST00000637988 PFKPQ01813 784 aa6.26□□□□□ -1.41
SCN1A-217ENST00000637988 ZNF211Q13398 564 aaPredicted RBP6.26□□□□□ -1.41
SCN1A-217ENST00000637988 KRR1Q13601 381 aaKnown RBP6.26□□□□□ -1.41
SCN1A-217ENST00000637988 DNAL1Q4LDG9 190 aa6.26□□□□□ -1.41
SCN1A-217ENST00000637988 PARGQ86W56 976 aa6.26□□□□□ -1.41
SCN1A-217ENST00000637988 RASGRP3Q8IV61 690 aa6.26□□□□□ -1.41
SCN1A-217ENST00000637988 DPF2Q92785 391 aa6.26□□□□□ -1.41
SCN1A-217ENST00000637988 EME1Q96AY2 570 aa6.26□□□□□ -1.41
SCN1A-217ENST00000637988 TMEM176AQ96HP8 235 aa6.26□□□□□ -1.41
SCN1A-217ENST00000637988 OLFM3Q96PB7 478 aa6.26□□□□□ -1.41
SCN1A-217ENST00000637988 KCNK16Q96T55 309 aa6.26□□□□□ -1.41
SCN1A-217ENST00000637988 ATAD3AQ9NVI7 634 aa6.26□□□□□ -1.41
SCN1A-217ENST00000637988 UBP1Q9NZI7 540 aa6.26□□□□□ -1.41
SCN1A-217ENST00000637988 AKAP8LQ9ULX6 646 aaKnown RBP eCLIP6.26□□□□□ -1.41
SCN1A-217ENST00000637988 RPS6KL1Q9Y6S9 549 aa6.26□□□□□ -1.41
SCN1A-217ENST00000637988 UNC13BO14795 1591 aa6.25□□□□□ -1.41
SCN1A-217ENST00000637988 ATP8B1O43520 1251 aa6.25□□□□□ -1.41
SCN1A-217ENST00000637988 CCNT2O60583 730 aaKnown RBP6.25□□□□□ -1.41
SCN1A-217ENST00000637988 KERAO60938 352 aa6.25□□□□□ -1.41
SCN1A-217ENST00000637988 MYL12AP19105 171 aa6.25□□□□□ -1.41
SCN1A-217ENST00000637988 TKTP29401 623 aaKnown RBP6.25□□□□□ -1.41
SCN1A-217ENST00000637988 ADIGQ0VDE8 80 aa6.25□□□□□ -1.41
SCN1A-217ENST00000637988 TSNQ15631 228 aaKnown RBP6.25□□□□□ -1.41
SCN1A-217ENST00000637988 ANKRD23Q86SG2 305 aa6.25□□□□□ -1.41
SCN1A-217ENST00000637988 IFNEQ86WN2 208 aa6.25□□□□□ -1.41
SCN1A-217ENST00000637988 RIBC1Q8N443 379 aaPredicted RBP6.25□□□□□ -1.41
SCN1A-217ENST00000637988 ZNF354BQ96LW1 612 aa6.25□□□□□ -1.41
SCN1A-217ENST00000637988 C11orf84Q9BUA3 381 aaPredicted RBP6.25□□□□□ -1.41
SCN1A-217ENST00000637988 TMX2Q9Y320 296 aa6.25□□□□□ -1.41
SCN1A-217ENST00000637988 CCDC88AQ3V6T2 1871 aa6.25□□□□□ -1.41
SCN1A-217ENST00000637988 ZSCAN5CA6NGD5 496 aaPredicted RBP6.25□□□□□ -1.41
SCN1A-217ENST00000637988 SUPT7LO94864 414 aa6.25□□□□□ -1.41
SCN1A-217ENST00000637988 ITIH2P19823 946 aa6.25□□□□□ -1.41
SCN1A-217ENST00000637988 ALAS2P22557 587 aa6.25□□□□□ -1.41
SCN1A-217ENST00000637988 VARSP26640 1264 aaKnown RBP6.25□□□□□ -1.41
SCN1A-217ENST00000637988 DMWDQ09019 674 aa6.25□□□□□ -1.41
SCN1A-217ENST00000637988 TCEAL6Q6IPX3 200 aa6.25□□□□□ -1.41
SCN1A-217ENST00000637988 DENND5BQ6ZUT9 1274 aa6.25□□□□□ -1.41
SCN1A-217ENST00000637988 ILDR2Q71H61 639 aa6.25□□□□□ -1.41
SCN1A-217ENST00000637988 C16orf59Q7L2K0 433 aa6.25□□□□□ -1.41
SCN1A-217ENST00000637988 ARHGEF19Q8IW93 802 aa6.25□□□□□ -1.41
SCN1A-217ENST00000637988 CNDP1Q96KN2 507 aa6.25□□□□□ -1.41
SCN1A-217ENST00000637988 JSRP1Q96MG2 331 aaPredicted RBP6.25□□□□□ -1.41
SCN1A-217ENST00000637988 FDXACB1Q9BRP7 624 aaPredicted RBP6.25□□□□□ -1.41
SCN1A-217ENST00000637988 LMBRD1Q9NUN5 540 aa6.25□□□□□ -1.41
Retrieved 100 of 20,778 RNA–protein pairs in 32.6 ms