RNA–Protein interactions for RNA: ENST00000636355.1

CLN3-248, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 975 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-248ENST00000636355 ERI2A8K979 691 aaKnown RBP10.88□□□□□ -0.67
CLN3-248ENST00000636355 E7ESA3 106 aa10.88□□□□□ -0.67
CLN3-248ENST00000636355 E9PAM4 449 aa10.88□□□□□ -0.67
CLN3-248ENST00000636355 FAM72CH0Y354 149 aa10.88□□□□□ -0.67
CLN3-248ENST00000636355 LRG1P02750 347 aa10.88□□□□□ -0.67
CLN3-248ENST00000636355 HNRNPA1P09651 372 aaKnown RBP eCLIP10.88□□□□□ -0.67
CLN3-248ENST00000636355 DNAJB2P25686 324 aa10.88□□□□□ -0.67
CLN3-248ENST00000636355 CDC25CP30307 473 aa10.88□□□□□ -0.67
CLN3-248ENST00000636355 HSD17B3P37058 310 aa10.88□□□□□ -0.67
CLN3-248ENST00000636355 GARSP41250 739 aaKnown RBP10.88□□□□□ -0.67
CLN3-248ENST00000636355 MAPKAPK2P49137 400 aa10.88□□□□□ -0.67
CLN3-248ENST00000636355 SLC11A2P49281 568 aa10.88□□□□□ -0.67
CLN3-248ENST00000636355 HARS2P49590 506 aaKnown RBP10.88□□□□□ -0.67
CLN3-248ENST00000636355 PGFP49763 221 aa10.88□□□□□ -0.67
CLN3-248ENST00000636355 CDR1P51861 262 aa10.88□□□□□ -0.67
CLN3-248ENST00000636355 NDST2P52849 883 aa10.88□□□□□ -0.67
CLN3-248ENST00000636355 TWF1Q12792 350 aa10.88□□□□□ -0.67
CLN3-248ENST00000636355 SLC10A2Q12908 348 aaPredicted RBP10.88□□□□□ -0.67
CLN3-248ENST00000636355 SEMA5AQ13591 1074 aa10.88□□□□□ -0.67
CLN3-248ENST00000636355 KCNJ11Q14654 390 aa10.88□□□□□ -0.67
CLN3-248ENST00000636355 HIF1AQ16665 826 aa10.88□□□□□ -0.67
CLN3-248ENST00000636355 C5orf22Q49AR2 442 aa10.88□□□□□ -0.67
CLN3-248ENST00000636355 FAM72AQ5TYM5 149 aa10.88□□□□□ -0.67
CLN3-248ENST00000636355 PIK3R6Q5UE93 754 aa10.88□□□□□ -0.67
CLN3-248ENST00000636355 ARMC3Q5W041 872 aa10.88□□□□□ -0.67
CLN3-248ENST00000636355 AFMIDQ63HM1 303 aa10.88□□□□□ -0.67
CLN3-248ENST00000636355 DENND2CQ68D51 928 aa10.88□□□□□ -0.67
CLN3-248ENST00000636355 ITPRIPL1Q6GPH6 555 aa10.88□□□□□ -0.67
CLN3-248ENST00000636355 FAM72DQ6L9T8 149 aa10.88□□□□□ -0.67
CLN3-248ENST00000636355 TIGD7Q6NT04 549 aaPredicted RBP10.88□□□□□ -0.67
CLN3-248ENST00000636355 ARHGEF18Q6ZSZ5 1173 aa10.88□□□□□ -0.67
CLN3-248ENST00000636355 CENPUQ71F23 418 aa10.88□□□□□ -0.67
CLN3-248ENST00000636355 TMC7Q7Z402 723 aa10.88□□□□□ -0.67
CLN3-248ENST00000636355 FAM72BQ86X60 149 aa10.88□□□□□ -0.67
CLN3-248ENST00000636355 ZNF683Q8IZ20 524 aa10.88□□□□□ -0.67
CLN3-248ENST00000636355 UMODL1-AS1Q8N2C9 162 aa10.88□□□□□ -0.67
CLN3-248ENST00000636355 MRPL43Q8N983 215 aaKnown RBP10.88□□□□□ -0.67
CLN3-248ENST00000636355 NAT8LQ8N9F0 302 aa10.88□□□□□ -0.67
CLN3-248ENST00000636355 TSEN2Q8NCE0 465 aaKnown RBP10.88□□□□□ -0.67
CLN3-248ENST00000636355 MCUQ8NE86 351 aa10.88□□□□□ -0.67
CLN3-248ENST00000636355 NUP210Q8TEM1 1887 aaPredicted RBP10.88□□□□□ -0.67
CLN3-248ENST00000636355 GIPC2Q8TF65 315 aa10.88□□□□□ -0.67
CLN3-248ENST00000636355 CPT1BQ92523 772 aa10.88□□□□□ -0.67
CLN3-248ENST00000636355 LRRC39Q96DD0 335 aa10.88□□□□□ -0.67
CLN3-248ENST00000636355 KLHL5Q96PQ7 755 aa10.88□□□□□ -0.67
CLN3-248ENST00000636355 GCNAQ96QF7 691 aa10.88□□□□□ -0.67
CLN3-248ENST00000636355 DDX50Q9BQ39 737 aaKnown RBP10.88□□□□□ -0.67
CLN3-248ENST00000636355 TMEM109Q9BVC6 243 aa10.88□□□□□ -0.67
CLN3-248ENST00000636355 ZYG11BQ9C0D3 744 aa10.88□□□□□ -0.67
CLN3-248ENST00000636355 ETNK2Q9NVF9 386 aa10.88□□□□□ -0.67
CLN3-248ENST00000636355 TMEM248Q9NWD8 314 aa10.88□□□□□ -0.67
CLN3-248ENST00000636355 MAGED2Q9UNF1 606 aaPredicted RBP10.88□□□□□ -0.67
CLN3-248ENST00000636355 HS3ST4Q9Y661 456 aa10.88□□□□□ -0.67
CLN3-248ENST00000636355 NUP205Q92621 2012 aa10.87□□□□□ -0.67
CLN3-248ENST00000636355 SLC12A8A0AV02 714 aa10.87□□□□□ -0.67
CLN3-248ENST00000636355 C2orf71A6NGG8 1288 aa10.87□□□□□ -0.67
CLN3-248ENST00000636355 GOLGA8KD6RF30 607 aa10.87□□□□□ -0.67
CLN3-248ENST00000636355 RNF103O00237 685 aa10.87□□□□□ -0.67
CLN3-248ENST00000636355 COCHO43405 550 aa10.87□□□□□ -0.67
CLN3-248ENST00000636355 TGM5O43548 720 aa10.87□□□□□ -0.67
CLN3-248ENST00000636355 RRP9O43818 475 aaKnown RBP10.87□□□□□ -0.67
CLN3-248ENST00000636355 SPAG6O75602 509 aa10.87□□□□□ -0.67
CLN3-248ENST00000636355 PAPLNO95428 1278 aa10.87□□□□□ -0.67
CLN3-248ENST00000636355 MLNP12872 115 aa10.87□□□□□ -0.67
CLN3-248ENST00000636355 DDX6P26196 483 aaKnown RBP eCLIP10.87□□□□□ -0.67
CLN3-248ENST00000636355 RBL1P28749 1068 aa10.87□□□□□ -0.67
CLN3-248ENST00000636355 VPS41P49754 854 aa10.87□□□□□ -0.67
CLN3-248ENST00000636355 EPHA5P54756 1037 aa10.87□□□□□ -0.67
CLN3-248ENST00000636355 ARL4CP56559 192 aa10.87□□□□□ -0.67
CLN3-248ENST00000636355 IFI35P80217 286 aaPredicted RBP10.87□□□□□ -0.67
CLN3-248ENST00000636355 TRIP13Q15645 432 aaPredicted RBP10.87□□□□□ -0.67
CLN3-248ENST00000636355 UAP1Q16222 522 aaPredicted RBP10.87□□□□□ -0.67
CLN3-248ENST00000636355 PARP15Q460N3 678 aa10.87□□□□□ -0.67
CLN3-248ENST00000636355 MS4A13Q5J8X5 152 aa10.87□□□□□ -0.67
CLN3-248ENST00000636355 ARTNQ5T4W7 220 aa10.87□□□□□ -0.67
CLN3-248ENST00000636355 DNAJB7Q7Z6W7 309 aaPredicted RBP10.87□□□□□ -0.67
CLN3-248ENST00000636355 NLRP14Q86W24 1093 aa10.87□□□□□ -0.67
CLN3-248ENST00000636355 PDIK1LQ8N165 341 aa10.87□□□□□ -0.67
CLN3-248ENST00000636355 ATPAF2Q8N5M1 289 aa10.87□□□□□ -0.67
CLN3-248ENST00000636355 NPWQ8N729 165 aa10.87□□□□□ -0.67
CLN3-248ENST00000636355 GLIS1Q8NBF1 620 aa10.87□□□□□ -0.67
CLN3-248ENST00000636355 GPR152Q8TDT2 470 aa10.87□□□□□ -0.67
CLN3-248ENST00000636355 TGS1Q96RS0 853 aaKnown RBP10.87□□□□□ -0.67
CLN3-248ENST00000636355 RBM15Q96T37 977 aaKnown RBP eCLIP10.87□□□□□ -0.67
CLN3-248ENST00000636355 PRMT1Q99873 361 aaKnown RBP10.87□□□□□ -0.67
CLN3-248ENST00000636355 HINFPQ9BQA5 517 aa10.87□□□□□ -0.67
CLN3-248ENST00000636355 NACA2Q9H009 215 aa10.87□□□□□ -0.67
CLN3-248ENST00000636355 LMAN2LQ9H0V9 348 aa10.87□□□□□ -0.67
CLN3-248ENST00000636355 PRDM12Q9H4Q4 367 aa10.87□□□□□ -0.67
CLN3-248ENST00000636355 CCSER2Q9H7U1 834 aa10.87□□□□□ -0.67
CLN3-248ENST00000636355 XAB2Q9HCS7 855 aaKnown RBP10.87□□□□□ -0.67
CLN3-248ENST00000636355 TMPRSS4Q9NRS4 437 aa10.87□□□□□ -0.67
CLN3-248ENST00000636355 HAUS2Q9NVX0 235 aa10.87□□□□□ -0.67
CLN3-248ENST00000636355 IGSF9Q9P2J2 1179 aa10.87□□□□□ -0.67
CLN3-248ENST00000636355 STOML2Q9UJZ1 356 aa10.87□□□□□ -0.67
CLN3-248ENST00000636355 ATP8A1Q9Y2Q0 1164 aa10.87□□□□□ -0.67
CLN3-248ENST00000636355 MYO18AQ92614 2054 aaKnown RBP10.87□□□□□ -0.67
CLN3-248ENST00000636355 LCHNA4D1U4 455 aa10.86□□□□□ -0.67
CLN3-248ENST00000636355 GOLGA6CA6NDK9 693 aa10.86□□□□□ -0.67
CLN3-248ENST00000636355 DRGXA6NNA5 263 aa10.86□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 43.2 ms