RNA–Protein interactions for RNA: ENST00000625216.2

PNKP-217, Transcript of polynucleotide kinase 3'-phosphatase, humanhuman

TSL 5

Gene PNKP, Length 629 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PNKP-217ENST00000625216 HOXB2P14652 356 aa13.12□□□□□ -0.31
PNKP-217ENST00000625216 GBP1P32455 592 aa13.12□□□□□ -0.31
PNKP-217ENST00000625216 P2RY2P41231 377 aa13.12□□□□□ -0.31
PNKP-217ENST00000625216 NSFP46459 744 aaKnown RBP13.12□□□□□ -0.31
PNKP-217ENST00000625216 GNG11P61952 73 aa13.12□□□□□ -0.31
PNKP-217ENST00000625216 ETF1P62495 437 aaKnown RBP13.12□□□□□ -0.31
PNKP-217ENST00000625216 RING1Q06587 406 aa13.12□□□□□ -0.31
PNKP-217ENST00000625216 EIF4HQ15056 248 aaKnown RBP13.12□□□□□ -0.31
PNKP-217ENST00000625216 C2CD6Q53TS8 623 aa13.12□□□□□ -0.31
PNKP-217ENST00000625216 ZNF569Q5MCW4 686 aa13.12□□□□□ -0.31
PNKP-217ENST00000625216 SPDYCQ5MJ68 293 aa13.12□□□□□ -0.31
PNKP-217ENST00000625216 ADGRF1Q5T601 910 aa13.12□□□□□ -0.31
PNKP-217ENST00000625216 EGFLAMQ63HQ2 1017 aa13.12□□□□□ -0.31
PNKP-217ENST00000625216 NUGGCQ68CJ6 796 aa13.12□□□□□ -0.31
PNKP-217ENST00000625216 PMS2CLQ68D20 193 aa13.12□□□□□ -0.31
PNKP-217ENST00000625216 SYT10Q6XYQ8 523 aa13.12□□□□□ -0.31
PNKP-217ENST00000625216 MMS22LQ6ZRQ5 1243 aa13.12□□□□□ -0.31
PNKP-217ENST00000625216 TMEM110Q86TL2 294 aa13.12□□□□□ -0.31
PNKP-217ENST00000625216 PHF13Q86YI8 300 aaPredicted RBP13.12□□□□□ -0.31
PNKP-217ENST00000625216 MCOLN2Q8IZK6 566 aa13.12□□□□□ -0.31
PNKP-217ENST00000625216 C12orf50Q8NA57 414 aaPredicted RBP13.12□□□□□ -0.31
PNKP-217ENST00000625216 DDI1Q8WTU0 396 aa13.12□□□□□ -0.31
PNKP-217ENST00000625216 CTNNBL1Q8WYA6 563 aaPredicted RBP13.12□□□□□ -0.31
PNKP-217ENST00000625216 RFFLQ8WZ73 363 aa13.12□□□□□ -0.31
PNKP-217ENST00000625216 BHMTQ93088 406 aa13.12□□□□□ -0.31
PNKP-217ENST00000625216 TMA16Q96EY4 203 aaKnown RBP13.12□□□□□ -0.31
PNKP-217ENST00000625216 GABRG3Q99928 467 aa13.12□□□□□ -0.31
PNKP-217ENST00000625216 SLC4A5Q9BY07 1137 aa13.12□□□□□ -0.31
PNKP-217ENST00000625216 LHX5Q9H2C1 402 aa13.12□□□□□ -0.31
PNKP-217ENST00000625216 ST7Q9NRC1 585 aa13.12□□□□□ -0.31
PNKP-217ENST00000625216 BCCIPQ9P287 314 aaKnown RBP eCLIP13.12□□□□□ -0.31
PNKP-217ENST00000625216 HCN2Q9UL51 889 aa13.12□□□□□ -0.31
PNKP-217ENST00000625216 DYNC1LI1Q9Y6G9 523 aaKnown RBP13.12□□□□□ -0.31
PNKP-217ENST00000625216 DCHS1Q96JQ0 3298 aa13.12□□□□□ -0.31
PNKP-217ENST00000625216 MYO16Q9Y6X6 1858 aa13.12□□□□□ -0.31
PNKP-217ENST00000625216 ATG2BQ96BY7 2078 aa13.11□□□□□ -0.31
PNKP-217ENST00000625216 A0A0A6YYK5 440 aaPredicted RBP13.11□□□□□ -0.31
PNKP-217ENST00000625216 A0A1W2PQF6 199 aa13.11□□□□□ -0.31
PNKP-217ENST00000625216 BCLAF3A2AJT9 711 aaKnown RBP13.11□□□□□ -0.31
PNKP-217ENST00000625216 SLC30A4O14863 429 aa13.11□□□□□ -0.31
PNKP-217ENST00000625216 KIF5CO60282 957 aa13.11□□□□□ -0.31
PNKP-217ENST00000625216 MPLP40238 635 aa13.11□□□□□ -0.31
PNKP-217ENST00000625216 SLC11A2P49281 568 aa13.11□□□□□ -0.31
PNKP-217ENST00000625216 ATXN1P54253 815 aaKnown RBP13.11□□□□□ -0.31
PNKP-217ENST00000625216 NNTQ13423 1086 aa13.11□□□□□ -0.31
PNKP-217ENST00000625216 PTPN20Q4JDL3 420 aa13.11□□□□□ -0.31
PNKP-217ENST00000625216 MPP7Q5T2T1 576 aa13.11□□□□□ -0.31
PNKP-217ENST00000625216 SCUBE3Q8IX30 993 aa13.11□□□□□ -0.31
PNKP-217ENST00000625216 PGBD3Q8N328 593 aa13.11□□□□□ -0.31
PNKP-217ENST00000625216 ZNF557Q8N988 423 aaPredicted RBP13.11□□□□□ -0.31
PNKP-217ENST00000625216 TMEM35BQ8NCS4 154 aa13.11□□□□□ -0.31
PNKP-217ENST00000625216 HMGB4Q8WW32 186 aa13.11□□□□□ -0.31
PNKP-217ENST00000625216 PIWIL1Q96J94 861 aaKnown RBP13.11□□□□□ -0.31
PNKP-217ENST00000625216 SERPINB11Q96P15 392 aa13.11□□□□□ -0.31
PNKP-217ENST00000625216 DDX50Q9BQ39 737 aaKnown RBP13.11□□□□□ -0.31
PNKP-217ENST00000625216 MIS12Q9H081 205 aa13.11□□□□□ -0.31
PNKP-217ENST00000625216 OSGEPQ9NPF4 335 aa13.11□□□□□ -0.31
PNKP-217ENST00000625216 ZDHHC4Q9NPG8 344 aa13.11□□□□□ -0.31
PNKP-217ENST00000625216 TJP2Q9UDY2 1190 aa13.11□□□□□ -0.31
PNKP-217ENST00000625216 LOC105378220A0A1B0GUY1 285 aaPredicted RBP13.1□□□□□ -0.31
PNKP-217ENST00000625216 KIF2AO00139 706 aaPredicted RBP13.1□□□□□ -0.31
PNKP-217ENST00000625216 PIK3R2O00459 728 aa13.1□□□□□ -0.31
PNKP-217ENST00000625216 IRAK2O43187 625 aa13.1□□□□□ -0.31
PNKP-217ENST00000625216 MAP3K13O43283 966 aa13.1□□□□□ -0.31
PNKP-217ENST00000625216 ZNF217O75362 1048 aa13.1□□□□□ -0.31
PNKP-217ENST00000625216 IGLV3-27P01718 113 aa13.1□□□□□ -0.31
PNKP-217ENST00000625216 CYP1A2P05177 515 aa13.1□□□□□ -0.31
PNKP-217ENST00000625216 NCAM1P13591 858 aa13.1□□□□□ -0.31
PNKP-217ENST00000625216 MMP8P22894 467 aa13.1□□□□□ -0.31
PNKP-217ENST00000625216 RRM1P23921 792 aa13.1□□□□□ -0.31
PNKP-217ENST00000625216 DPP6P42658 865 aa13.1□□□□□ -0.31
PNKP-217ENST00000625216 WASP42768 502 aa13.1□□□□□ -0.31
PNKP-217ENST00000625216 LIMK1P53667 647 aa13.1□□□□□ -0.31
PNKP-217ENST00000625216 TBX4P57082 545 aa13.1□□□□□ -0.31
PNKP-217ENST00000625216 SNX16P57768 344 aa13.1□□□□□ -0.31
PNKP-217ENST00000625216 CREB5Q02930 508 aa13.1□□□□□ -0.31
PNKP-217ENST00000625216 C1QBPQ07021 282 aaKnown RBP13.1□□□□□ -0.31
PNKP-217ENST00000625216 MAP7D1Q3KQU3 841 aa13.1□□□□□ -0.31
PNKP-217ENST00000625216 SLC36A4Q6YBV0 504 aa13.1□□□□□ -0.31
PNKP-217ENST00000625216 LPCAT2Q7L5N7 544 aa13.1□□□□□ -0.31
PNKP-217ENST00000625216 ANKS1BQ7Z6G8 1248 aa13.1□□□□□ -0.31
PNKP-217ENST00000625216 IPO4Q8TEX9 1081 aaKnown RBP13.1□□□□□ -0.31
PNKP-217ENST00000625216 P2RY11Q96G91 374 aa13.1□□□□□ -0.31
PNKP-217ENST00000625216 CPXM1Q96SM3 734 aa13.1□□□□□ -0.31
PNKP-217ENST00000625216 ACOX2Q99424 681 aa13.1□□□□□ -0.31
PNKP-217ENST00000625216 ELOVL2Q9NXB9 296 aa13.1□□□□□ -0.31
PNKP-217ENST00000625216 ADAM22Q9P0K1 906 aa13.1□□□□□ -0.31
PNKP-217ENST00000625216 THAP10Q9P2Z0 257 aaPredicted RBP13.1□□□□□ -0.31
PNKP-217ENST00000625216 MYO1AQ9UBC5 1043 aa13.1□□□□□ -0.31
PNKP-217ENST00000625216 CNOT8Q9UFF9 292 aaKnown RBP13.1□□□□□ -0.31
PNKP-217ENST00000625216 DNAI1Q9UI46 699 aa13.1□□□□□ -0.31
PNKP-217ENST00000625216 INVSQ9Y283 1065 aa13.1□□□□□ -0.31
PNKP-217ENST00000625216 CEP83Q9Y592 693 aa13.1□□□□□ -0.31
PNKP-217ENST00000625216 CACNA1AO00555 2505 aa13.1□□□□□ -0.31
PNKP-217ENST00000625216 TCRBV5S1A1TA0A578 114 aa13.09□□□□□ -0.31
PNKP-217ENST00000625216 GRID2IPA4D2P6 1211 aa13.09□□□□□ -0.31
PNKP-217ENST00000625216 CAPN9O14815 690 aa13.09□□□□□ -0.31
PNKP-217ENST00000625216 ACSL4O60488 711 aa13.09□□□□□ -0.31
PNKP-217ENST00000625216 ERBB2P04626 1255 aa13.09□□□□□ -0.31
PNKP-217ENST00000625216 FYNP06241 537 aa13.09□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 19.7 ms