RNA–Protein interactions for RNA: ENST00000611481.1

LINC00540-201, long intergenic non-protein coding RNA 540, humanhuman

TSL 4

Gene LINC00540, Length 588 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00540-201ENST00000611481 GAB3Q8WWW8 586 aa4.93□□□□□ -1.62
LINC00540-201ENST00000611481 AUTS2Q8WXX7 1259 aa4.93□□□□□ -1.62
LINC00540-201ENST00000611481 TFAP2CQ92754 450 aa4.93□□□□□ -1.62
LINC00540-201ENST00000611481 STAMQ92783 540 aa4.93□□□□□ -1.62
LINC00540-201ENST00000611481 NELL2Q99435 816 aa4.93□□□□□ -1.62
LINC00540-201ENST00000611481 ASPSCR1Q9BZE9 553 aa4.93□□□□□ -1.62
LINC00540-201ENST00000611481 KIAA1586Q9HCI6 787 aa4.93□□□□□ -1.62
LINC00540-201ENST00000611481 ANKMY1Q9P2S6 941 aa4.93□□□□□ -1.62
LINC00540-201ENST00000611481 SWAP70Q9UH65 585 aa4.93□□□□□ -1.62
LINC00540-201ENST00000611481 ANAPC4Q9UJX5 808 aa4.93□□□□□ -1.62
LINC00540-201ENST00000611481 FEM1BQ9UK73 627 aa4.93□□□□□ -1.62
LINC00540-201ENST00000611481 NDRG2Q9UN36 371 aaKnown RBP4.93□□□□□ -1.62
LINC00540-201ENST00000611481 ZKSCAN5Q9Y2L8 839 aa4.93□□□□□ -1.62
LINC00540-201ENST00000611481 MYH8P13535 1937 aa4.93□□□□□ -1.62
LINC00540-201ENST00000611481 CLUHO75153 1309 aa4.93□□□□□ -1.62
LINC00540-201ENST00000611481 PCNX2A6NKB5 2137 aa4.92□□□□□ -1.62
LINC00540-201ENST00000611481 ANHXE9PGG2 379 aa4.92□□□□□ -1.62
LINC00540-201ENST00000611481 H0Y626 953 aa4.92□□□□□ -1.62
LINC00540-201ENST00000611481 TRIM16O95361 564 aa4.92□□□□□ -1.62
LINC00540-201ENST00000611481 UQCRFS1P1P0C7P4 283 aa4.92□□□□□ -1.62
LINC00540-201ENST00000611481 JMJD7P0C870 316 aa4.92□□□□□ -1.62
LINC00540-201ENST00000611481 SMIM10L2AP0DMW4 78 aa4.92□□□□□ -1.62
LINC00540-201ENST00000611481 SMIM10L2BP0DMW5 78 aa4.92□□□□□ -1.62
LINC00540-201ENST00000611481 LAMP2P13473 410 aa4.92□□□□□ -1.62
LINC00540-201ENST00000611481 CD53P19397 219 aa4.92□□□□□ -1.62
LINC00540-201ENST00000611481 CD52P31358 61 aa4.92□□□□□ -1.62
LINC00540-201ENST00000611481 CXCL12P48061 93 aa4.92□□□□□ -1.62
LINC00540-201ENST00000611481 MGAT5Q09328 741 aa4.92□□□□□ -1.62
LINC00540-201ENST00000611481 TFCP2Q12800 502 aa4.92□□□□□ -1.62
LINC00540-201ENST00000611481 FOXF2Q12947 444 aa4.92□□□□□ -1.62
LINC00540-201ENST00000611481 MORC3Q14149 939 aa4.92□□□□□ -1.62
LINC00540-201ENST00000611481 UBE3CQ15386 1083 aa4.92□□□□□ -1.62
LINC00540-201ENST00000611481 FAM102AQ5T9C2 384 aaPredicted RBP4.92□□□□□ -1.62
LINC00540-201ENST00000611481 ANKS6Q68DC2 871 aa4.92□□□□□ -1.62
LINC00540-201ENST00000611481 NXNQ6DKJ4 435 aa4.92□□□□□ -1.62
LINC00540-201ENST00000611481 KRBA2Q6ZNG9 492 aa4.92□□□□□ -1.62
LINC00540-201ENST00000611481 SEPT14Q6ZU15 432 aa4.92□□□□□ -1.62
LINC00540-201ENST00000611481 GET4Q7L5D6 327 aaPredicted RBP4.92□□□□□ -1.62
LINC00540-201ENST00000611481 KBTBD6Q86V97 674 aa4.92□□□□□ -1.62
LINC00540-201ENST00000611481 PASD1Q8IV76 773 aa4.92□□□□□ -1.62
LINC00540-201ENST00000611481 TCEAL8Q8IYN2 117 aa4.92□□□□□ -1.62
LINC00540-201ENST00000611481 CCDC17Q96LX7 622 aa4.92□□□□□ -1.62
LINC00540-201ENST00000611481 CDH19Q9H159 772 aa4.92□□□□□ -1.62
LINC00540-201ENST00000611481 SLC32A1Q9H598 525 aa4.92□□□□□ -1.62
LINC00540-201ENST00000611481 CWH43Q9H720 699 aa4.92□□□□□ -1.62
LINC00540-201ENST00000611481 WDR6Q9NNW5 1121 aaKnown RBP4.92□□□□□ -1.62
LINC00540-201ENST00000611481 TMEM9BQ9NQ34 198 aa4.92□□□□□ -1.62
LINC00540-201ENST00000611481 CASS4Q9NQ75 786 aa4.92□□□□□ -1.62
LINC00540-201ENST00000611481 PIH1D3Q9NQM4 214 aaKnown RBP4.92□□□□□ -1.62
LINC00540-201ENST00000611481 FBXO9Q9UK97 447 aaPredicted RBP4.92□□□□□ -1.62
LINC00540-201ENST00000611481 NRCAMQ92823 1304 aa4.92□□□□□ -1.62
LINC00540-201ENST00000611481 SPAG17Q6Q759 2223 aa4.92□□□□□ -1.62
LINC00540-201ENST00000611481 ASCC3Q8N3C0 2202 aaKnown RBP4.92□□□□□ -1.62
LINC00540-201ENST00000611481 KIAA1217Q5T5P2 1943 aa4.91□□□□□ -1.62
LINC00540-201ENST00000611481 MYH15Q9Y2K3 1946 aa4.91□□□□□ -1.62
LINC00540-201ENST00000611481 RELNP78509 3460 aa4.91□□□□□ -1.62
LINC00540-201ENST00000611481 POLQO75417 2590 aa4.91□□□□□ -1.62
LINC00540-201ENST00000611481 A0A087WV48 116 aa4.91□□□□□ -1.62
LINC00540-201ENST00000611481 LNP1A1A4G5 178 aa4.91□□□□□ -1.62
LINC00540-201ENST00000611481 TMEM232C9JQI7 657 aa4.91□□□□□ -1.62
LINC00540-201ENST00000611481 KATNA1O75449 491 aa4.91□□□□□ -1.62
LINC00540-201ENST00000611481 IDH1O75874 414 aaKnown RBP4.91□□□□□ -1.62
LINC00540-201ENST00000611481 CDKL5O76039 1030 aa4.91□□□□□ -1.62
LINC00540-201ENST00000611481 HSP90AA1P07900 732 aaKnown RBP4.91□□□□□ -1.62
LINC00540-201ENST00000611481 LTA4HP09960 611 aaKnown RBP4.91□□□□□ -1.62
LINC00540-201ENST00000611481 POU3F2P20265 443 aaPredicted RBP4.91□□□□□ -1.62
LINC00540-201ENST00000611481 FDXRP22570 491 aa4.91□□□□□ -1.62
LINC00540-201ENST00000611481 ATP8B2P98198 1209 aa4.91□□□□□ -1.62
LINC00540-201ENST00000611481 IKQ13123 557 aaPredicted RBP4.91□□□□□ -1.62
LINC00540-201ENST00000611481 PIN1Q13526 163 aaPredicted RBP4.91□□□□□ -1.62
LINC00540-201ENST00000611481 RAPGEF1Q13905 1077 aa4.91□□□□□ -1.62
LINC00540-201ENST00000611481 WTAPQ15007 396 aa4.91□□□□□ -1.62
LINC00540-201ENST00000611481 MLC1Q15049 377 aa4.91□□□□□ -1.62
LINC00540-201ENST00000611481 BMT2Q1RMZ1 405 aa4.91□□□□□ -1.62
LINC00540-201ENST00000611481 GFOD2Q3B7J2 385 aa4.91□□□□□ -1.62
LINC00540-201ENST00000611481 TAF1BQ53T94 588 aaPredicted RBP4.91□□□□□ -1.62
LINC00540-201ENST00000611481 FBXO47Q5MNV8 452 aa4.91□□□□□ -1.62
LINC00540-201ENST00000611481 FAM102BQ5T8I3 360 aa4.91□□□□□ -1.62
LINC00540-201ENST00000611481 RNF219Q5W0B1 726 aaPredicted RBP4.91□□□□□ -1.62
LINC00540-201ENST00000611481 PARM1Q6UWI2 310 aa4.91□□□□□ -1.62
LINC00540-201ENST00000611481 SLC30A10Q6XR72 485 aa4.91□□□□□ -1.62
LINC00540-201ENST00000611481 ZNF852Q6ZMS4 543 aa4.91□□□□□ -1.62
LINC00540-201ENST00000611481 C15orf39Q6ZRI6 1047 aa4.91□□□□□ -1.62
LINC00540-201ENST00000611481 CACNA2D4Q7Z3S7 1137 aa4.91□□□□□ -1.62
LINC00540-201ENST00000611481 GLB1L2Q8IW92 636 aa4.91□□□□□ -1.62
LINC00540-201ENST00000611481 SRRM1Q8IYB3 904 aaKnown RBP4.91□□□□□ -1.62
LINC00540-201ENST00000611481 SMG7Q92540 1137 aaKnown RBP4.91□□□□□ -1.62
LINC00540-201ENST00000611481 FGF14Q92915 247 aa4.91□□□□□ -1.62
LINC00540-201ENST00000611481 CHMP4CQ96CF2 233 aa4.91□□□□□ -1.62
LINC00540-201ENST00000611481 ZNF558Q96NG5 402 aa4.91□□□□□ -1.62
LINC00540-201ENST00000611481 TRIM4Q9C037 500 aa4.91□□□□□ -1.62
LINC00540-201ENST00000611481 RNPEPQ9H4A4 650 aa4.91□□□□□ -1.62
LINC00540-201ENST00000611481 PRORYQ9H606 182 aa4.91□□□□□ -1.62
LINC00540-201ENST00000611481 SETD4Q9NVD3 440 aa4.91□□□□□ -1.62
LINC00540-201ENST00000611481 H2AFY2Q9P0M6 372 aaPredicted RBP4.91□□□□□ -1.62
LINC00540-201ENST00000611481 CCPG1Q9ULG6 757 aa4.91□□□□□ -1.62
LINC00540-201ENST00000611481 MRPS17Q9Y2R5 130 aaKnown RBP4.91□□□□□ -1.62
LINC00540-201ENST00000611481 SPEF1Q9Y4P9 236 aa4.91□□□□□ -1.62
LINC00540-201ENST00000611481 PCDHB7Q9Y5E2 793 aa4.91□□□□□ -1.62
LINC00540-201ENST00000611481 PCDHGA5Q9Y5G8 931 aa4.91□□□□□ -1.62
Retrieved 100 of 20,778 RNA–protein pairs in 37.7 ms