RNA–Protein interactions for RNA: ENST00000599716.5

SHKBP1-220, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 2

Gene SHKBP1, Length 572 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-220ENST00000599716 PRICKLE1Q96MT3 831 aaPredicted RBP9□□□□□ -0.97
SHKBP1-220ENST00000599716 CDK5RAP1Q96SZ6 601 aaKnown RBP9□□□□□ -0.97
SHKBP1-220ENST00000599716 BTBD1Q9H0C5 482 aa9□□□□□ -0.97
SHKBP1-220ENST00000599716 LRRC4Q9HBW1 653 aa9□□□□□ -0.97
SHKBP1-220ENST00000599716 RAB20Q9NX57 234 aa9□□□□□ -0.97
SHKBP1-220ENST00000599716 KIAA1522Q9P206 1035 aaPredicted RBP9□□□□□ -0.97
SHKBP1-220ENST00000599716 INTS6Q9UL03 887 aaKnown RBP9□□□□□ -0.97
SHKBP1-220ENST00000599716 PLA2G4CQ9UP65 541 aa9□□□□□ -0.97
SHKBP1-220ENST00000599716 HPSEQ9Y251 543 aa9□□□□□ -0.97
SHKBP1-220ENST00000599716 NFE2L3Q9Y4A8 694 aa9□□□□□ -0.97
SHKBP1-220ENST00000599716 MYLKQ15746 1914 aa8.99□□□□□ -0.97
SHKBP1-220ENST00000599716 A0A1W2PP55 124 aa8.99□□□□□ -0.97
SHKBP1-220ENST00000599716 TTC34A8MYJ7 566 aa8.99□□□□□ -0.97
SHKBP1-220ENST00000599716 B8ZZF3 427 aa8.99□□□□□ -0.97
SHKBP1-220ENST00000599716 XPO1O14980 1071 aaKnown RBP8.99□□□□□ -0.97
SHKBP1-220ENST00000599716 NPC1O15118 1278 aa8.99□□□□□ -0.97
SHKBP1-220ENST00000599716 MID1O15344 667 aa8.99□□□□□ -0.97
SHKBP1-220ENST00000599716 TLX3O43711 291 aaPredicted RBP8.99□□□□□ -0.97
SHKBP1-220ENST00000599716 RHOBTB3O94955 611 aa8.99□□□□□ -0.97
SHKBP1-220ENST00000599716 DLDP09622 509 aaKnown RBP8.99□□□□□ -0.97
SHKBP1-220ENST00000599716 VAV1P15498 845 aa8.99□□□□□ -0.97
SHKBP1-220ENST00000599716 CD27P26842 260 aa8.99□□□□□ -0.97
SHKBP1-220ENST00000599716 SYKP43405 635 aa8.99□□□□□ -0.97
SHKBP1-220ENST00000599716 GRIA4P48058 902 aa8.99□□□□□ -0.97
SHKBP1-220ENST00000599716 CCT8P50990 548 aa8.99□□□□□ -0.97
SHKBP1-220ENST00000599716 ZNF132P52740 706 aa8.99□□□□□ -0.97
SHKBP1-220ENST00000599716 METAP1P53582 386 aa8.99□□□□□ -0.97
SHKBP1-220ENST00000599716 RPS24P62847 133 aaKnown RBP8.99□□□□□ -0.97
SHKBP1-220ENST00000599716 SEMG2Q02383 582 aa8.99□□□□□ -0.97
SHKBP1-220ENST00000599716 KCNJ12Q14500 433 aa8.99□□□□□ -0.97
SHKBP1-220ENST00000599716 SMAD1Q15797 465 aaKnown RBP8.99□□□□□ -0.97
SHKBP1-220ENST00000599716 ZCWPW2Q504Y3 356 aa8.99□□□□□ -0.97
SHKBP1-220ENST00000599716 FAM133BQ5BKY9 247 aaKnown RBP8.99□□□□□ -0.97
SHKBP1-220ENST00000599716 FSCBQ5H9T9 825 aa8.99□□□□□ -0.97
SHKBP1-220ENST00000599716 COLEC12Q5KU26 742 aa8.99□□□□□ -0.97
SHKBP1-220ENST00000599716 ADGRF1Q5T601 910 aa8.99□□□□□ -0.97
SHKBP1-220ENST00000599716 PCSK4Q6UW60 755 aa8.99□□□□□ -0.97
SHKBP1-220ENST00000599716 MMAAQ8IVH4 418 aaKnown RBP8.99□□□□□ -0.97
SHKBP1-220ENST00000599716 SIX6OS1Q8N1H7 587 aa8.99□□□□□ -0.97
SHKBP1-220ENST00000599716 ARHGAP18Q8N392 663 aa8.99□□□□□ -0.97
SHKBP1-220ENST00000599716 CCDC150Q8NCX0 1101 aa8.99□□□□□ -0.97
SHKBP1-220ENST00000599716 FBXL13Q8NEE6 735 aa8.99□□□□□ -0.97
SHKBP1-220ENST00000599716 TFAP2BQ92481 460 aa8.99□□□□□ -0.97
SHKBP1-220ENST00000599716 KAT5Q92993 513 aa8.99□□□□□ -0.97
SHKBP1-220ENST00000599716 FCRL3Q96P31 734 aaPredicted RBP8.99□□□□□ -0.97
SHKBP1-220ENST00000599716 IPO9Q96P70 1041 aaKnown RBP8.99□□□□□ -0.97
SHKBP1-220ENST00000599716 PHF12Q96QT6 1004 aa8.99□□□□□ -0.97
SHKBP1-220ENST00000599716 CDC6Q99741 560 aa8.99□□□□□ -0.97
SHKBP1-220ENST00000599716 ZSWIM1Q9BR11 485 aa8.99□□□□□ -0.97
SHKBP1-220ENST00000599716 SLC2A11Q9BYW1 496 aa8.99□□□□□ -0.97
SHKBP1-220ENST00000599716 NEUROG2Q9H2A3 272 aa8.99□□□□□ -0.97
SHKBP1-220ENST00000599716 GDPD2Q9HCC8 539 aa8.99□□□□□ -0.97
SHKBP1-220ENST00000599716 FBXL12Q9NXK8 326 aa8.99□□□□□ -0.97
SHKBP1-220ENST00000599716 FTSJ1Q9UET6 329 aa8.99□□□□□ -0.97
SHKBP1-220ENST00000599716 XPO7Q9UIA9 1087 aaKnown RBP8.99□□□□□ -0.97
SHKBP1-220ENST00000599716 SRPK3Q9UPE1 567 aa8.99□□□□□ -0.97
SHKBP1-220ENST00000599716 NYNRINQ9P2P1 1898 aaKnown RBP8.99□□□□□ -0.97
SHKBP1-220ENST00000599716 ARID1BQ8NFD5 2236 aaPredicted RBP8.99□□□□□ -0.97
SHKBP1-220ENST00000599716 TRIM49BA6NDI0 452 aa8.98□□□□□ -0.97
SHKBP1-220ENST00000599716 MAPK13O15264 365 aa8.98□□□□□ -0.97
SHKBP1-220ENST00000599716 TNFSF14O43557 240 aa8.98□□□□□ -0.97
SHKBP1-220ENST00000599716 TIMM44O43615 452 aa8.98□□□□□ -0.97
SHKBP1-220ENST00000599716 RNASEH2AO75792 299 aaKnown RBP8.98□□□□□ -0.97
SHKBP1-220ENST00000599716 MOCS2O96007 188 aaPredicted RBP8.98□□□□□ -0.97
SHKBP1-220ENST00000599716 HSP90AA1P07900 732 aaKnown RBP8.98□□□□□ -0.97
SHKBP1-220ENST00000599716 POLR2EP19388 210 aaKnown RBP8.98□□□□□ -0.97
SHKBP1-220ENST00000599716 CMA1P23946 247 aa8.98□□□□□ -0.97
SHKBP1-220ENST00000599716 BRD2P25440 801 aaKnown RBP8.98□□□□□ -0.97
SHKBP1-220ENST00000599716 EIF2S3P41091 472 aaKnown RBP8.98□□□□□ -0.97
SHKBP1-220ENST00000599716 CSKP41240 450 aa8.98□□□□□ -0.97
SHKBP1-220ENST00000599716 GRK6P43250 576 aa8.98□□□□□ -0.97
SHKBP1-220ENST00000599716 PSMD8P48556 350 aa8.98□□□□□ -0.97
SHKBP1-220ENST00000599716 STK19P49842 368 aaPredicted RBP8.98□□□□□ -0.97
SHKBP1-220ENST00000599716 PMS1P54277 932 aaKnown RBP8.98□□□□□ -0.97
SHKBP1-220ENST00000599716 BCAT1P54687 386 aa8.98□□□□□ -0.97
SHKBP1-220ENST00000599716 GALCP54803 685 aa8.98□□□□□ -0.97
SHKBP1-220ENST00000599716 C21orf59P57076 290 aa8.98□□□□□ -0.97
SHKBP1-220ENST00000599716 DAOAP59103 153 aa8.98□□□□□ -0.97
SHKBP1-220ENST00000599716 PPP2CBP62714 309 aa8.98□□□□□ -0.97
SHKBP1-220ENST00000599716 PPP2CAP67775 309 aa8.98□□□□□ -0.97
SHKBP1-220ENST00000599716 BST2Q10589 180 aaKnown RBP8.98□□□□□ -0.97
SHKBP1-220ENST00000599716 BNIP3Q12983 259 aa8.98□□□□□ -0.97
SHKBP1-220ENST00000599716 CUL2Q13617 745 aa8.98□□□□□ -0.97
SHKBP1-220ENST00000599716 SUZ12Q15022 739 aaKnown RBP8.98□□□□□ -0.97
SHKBP1-220ENST00000599716 TEAD4Q15561 434 aa8.98□□□□□ -0.97
SHKBP1-220ENST00000599716 POM121L1PQ3SYA9 428 aa8.98□□□□□ -0.97
SHKBP1-220ENST00000599716 SGO2Q562F6 1265 aa8.98□□□□□ -0.97
SHKBP1-220ENST00000599716 PIK3R6Q5UE93 754 aa8.98□□□□□ -0.97
SHKBP1-220ENST00000599716 ZNF776Q68DI1 518 aaPredicted RBP8.98□□□□□ -0.97
SHKBP1-220ENST00000599716 KIAA0895LQ68EN5 471 aa8.98□□□□□ -0.97
SHKBP1-220ENST00000599716 PMF1Q6P1K2 205 aa8.98□□□□□ -0.97
SHKBP1-220ENST00000599716 KIAA0907Q7Z7F0 614 aaPredicted RBP8.98□□□□□ -0.97
SHKBP1-220ENST00000599716 CIR1Q86X95 450 aaPredicted RBP8.98□□□□□ -0.97
SHKBP1-220ENST00000599716 MFN1Q8IWA4 741 aa8.98□□□□□ -0.97
SHKBP1-220ENST00000599716 AHI1Q8N157 1196 aa8.98□□□□□ -0.97
SHKBP1-220ENST00000599716 CARNMT1Q8N4J0 409 aa8.98□□□□□ -0.97
SHKBP1-220ENST00000599716 EID2Q8N6I1 236 aa8.98□□□□□ -0.97
SHKBP1-220ENST00000599716 DDX51Q8N8A6 666 aaKnown RBP eCLIP8.98□□□□□ -0.97
SHKBP1-220ENST00000599716 WFIKKN2Q8TEU8 576 aa8.98□□□□□ -0.97
SHKBP1-220ENST00000599716 IGSF8Q969P0 613 aa8.98□□□□□ -0.97
Retrieved 100 of 20,778 RNA–protein pairs in 42.4 ms