RNA–Protein interactions for RNA: ENST00000597325.1

SHKBP1-213, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 5

Gene SHKBP1, Length 366 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-213ENST00000597325 PCNX2A6NKB5 2137 aa12.5□□□□□ -0.41
SHKBP1-213ENST00000597325 A0A1W2PRU2 124 aa12.5□□□□□ -0.41
SHKBP1-213ENST00000597325 CTAGE9A4FU28 777 aa12.5□□□□□ -0.41
SHKBP1-213ENST00000597325 EIF4E1BA6NMX2 242 aaKnown RBP12.5□□□□□ -0.41
SHKBP1-213ENST00000597325 MIF4GDA9UHW6 222 aaKnown RBP12.5□□□□□ -0.41
SHKBP1-213ENST00000597325 ZNF197O14709 1029 aa12.5□□□□□ -0.41
SHKBP1-213ENST00000597325 PRPSAP2O60256 369 aa12.5□□□□□ -0.41
SHKBP1-213ENST00000597325 ZNF500O60304 480 aaPredicted RBP12.5□□□□□ -0.41
SHKBP1-213ENST00000597325 TADA3O75528 432 aa12.5□□□□□ -0.41
SHKBP1-213ENST00000597325 TRUB2O95900 331 aaKnown RBP12.5□□□□□ -0.41
SHKBP1-213ENST00000597325 F9P00740 461 aa12.5□□□□□ -0.41
SHKBP1-213ENST00000597325 FYNP06241 537 aa12.5□□□□□ -0.41
SHKBP1-213ENST00000597325 TNNT1P13805 278 aa12.5□□□□□ -0.41
SHKBP1-213ENST00000597325 DDX6P26196 483 aaKnown RBP eCLIP12.5□□□□□ -0.41
SHKBP1-213ENST00000597325 CASQ1P31415 396 aa12.5□□□□□ -0.41
SHKBP1-213ENST00000597325 PCK1P35558 622 aa12.5□□□□□ -0.41
SHKBP1-213ENST00000597325 ATP5C1P36542 298 aaKnown RBP12.5□□□□□ -0.41
SHKBP1-213ENST00000597325 PGFP49763 221 aa12.5□□□□□ -0.41
SHKBP1-213ENST00000597325 EPHA5P54756 1037 aa12.5□□□□□ -0.41
SHKBP1-213ENST00000597325 ETF1P62495 437 aaKnown RBP12.5□□□□□ -0.41
SHKBP1-213ENST00000597325 EFEMP1Q12805 493 aa12.5□□□□□ -0.41
SHKBP1-213ENST00000597325 ODF2Q5BJF6 829 aa12.5□□□□□ -0.41
SHKBP1-213ENST00000597325 ZFYVE27Q5T4F4 411 aa12.5□□□□□ -0.41
SHKBP1-213ENST00000597325 DAB2IPQ5VWQ8 1189 aa12.5□□□□□ -0.41
SHKBP1-213ENST00000597325 TANGO2Q6ICL3 276 aa12.5□□□□□ -0.41
SHKBP1-213ENST00000597325 CC2D1AQ6P1N0 951 aaPredicted RBP12.5□□□□□ -0.41
SHKBP1-213ENST00000597325 SCYL2Q6P3W7 929 aa12.5□□□□□ -0.41
SHKBP1-213ENST00000597325 SLFN11Q7Z7L1 901 aa12.5□□□□□ -0.41
SHKBP1-213ENST00000597325 RHOT1Q8IXI2 618 aa12.5□□□□□ -0.41
SHKBP1-213ENST00000597325 UBL4BQ8N7F7 174 aa12.5□□□□□ -0.41
SHKBP1-213ENST00000597325 GAB3Q8WWW8 586 aa12.5□□□□□ -0.41
SHKBP1-213ENST00000597325 RNF34Q969K3 372 aa12.5□□□□□ -0.41
SHKBP1-213ENST00000597325 NAPGQ99747 312 aaPredicted RBP12.5□□□□□ -0.41
SHKBP1-213ENST00000597325 CCSER2Q9H7U1 834 aa12.5□□□□□ -0.41
SHKBP1-213ENST00000597325 IL21Q9HBE4 155 aa12.5□□□□□ -0.41
SHKBP1-213ENST00000597325 TRPV5Q9NQA5 729 aa12.5□□□□□ -0.41
SHKBP1-213ENST00000597325 MARCH2Q9P0N8 246 aa12.5□□□□□ -0.41
SHKBP1-213ENST00000597325 DNMT3BQ9UBC3 853 aaKnown RBP12.5□□□□□ -0.41
SHKBP1-213ENST00000597325 DNAI1Q9UI46 699 aa12.5□□□□□ -0.41
SHKBP1-213ENST00000597325 EML5Q05BV3 1969 aa12.5□□□□□ -0.41
SHKBP1-213ENST00000597325 ZNF638Q14966 1978 aaKnown RBP12.5□□□□□ -0.41
SHKBP1-213ENST00000597325 TRAV19A0A0A6YYK7 116 aa12.49□□□□□ -0.41
SHKBP1-213ENST00000597325 CCDC66A2RUB6 948 aa12.49□□□□□ -0.41
SHKBP1-213ENST00000597325 IRAK2O43187 625 aa12.49□□□□□ -0.41
SHKBP1-213ENST00000597325 COCHO43405 550 aa12.49□□□□□ -0.41
SHKBP1-213ENST00000597325 PSTPIP1O43586 416 aa12.49□□□□□ -0.41
SHKBP1-213ENST00000597325 LRCH4O75427 683 aa12.49□□□□□ -0.41
SHKBP1-213ENST00000597325 C1QL1O75973 258 aa12.49□□□□□ -0.41
SHKBP1-213ENST00000597325 F11P03951 625 aa12.49□□□□□ -0.41
SHKBP1-213ENST00000597325 KRT7P08729 469 aa12.49□□□□□ -0.41
SHKBP1-213ENST00000597325 SLC2A3P11169 496 aa12.49□□□□□ -0.41
SHKBP1-213ENST00000597325 PFKLP17858 780 aa12.49□□□□□ -0.41
SHKBP1-213ENST00000597325 FCARP24071 287 aa12.49□□□□□ -0.41
SHKBP1-213ENST00000597325 KPNA1P52294 538 aaPredicted RBP12.49□□□□□ -0.41
SHKBP1-213ENST00000597325 CYP4F8P98187 520 aa12.49□□□□□ -0.41
SHKBP1-213ENST00000597325 NNTQ13423 1086 aa12.49□□□□□ -0.41
SHKBP1-213ENST00000597325 RPS6KA1Q15418 735 aa12.49□□□□□ -0.41
SHKBP1-213ENST00000597325 KLHDC10Q6PID8 442 aa12.49□□□□□ -0.41
SHKBP1-213ENST00000597325 SYT10Q6XYQ8 523 aa12.49□□□□□ -0.41
SHKBP1-213ENST00000597325 GAREM2Q75VX8 874 aa12.49□□□□□ -0.41
SHKBP1-213ENST00000597325 NT5DC3Q86UY8 548 aa12.49□□□□□ -0.41
SHKBP1-213ENST00000597325 MIB1Q86YT6 1006 aa12.49□□□□□ -0.41
SHKBP1-213ENST00000597325 ZNF276Q8N554 614 aa12.49□□□□□ -0.41
SHKBP1-213ENST00000597325 NT5C3BQ969T7 300 aa12.49□□□□□ -0.41
SHKBP1-213ENST00000597325 ELSPBP1Q96BH3 223 aa12.49□□□□□ -0.41
SHKBP1-213ENST00000597325 PGAP3Q96FM1 320 aaPredicted RBP12.49□□□□□ -0.41
SHKBP1-213ENST00000597325 ZC3H10Q96K80 434 aaKnown RBP12.49□□□□□ -0.41
SHKBP1-213ENST00000597325 WDR24Q96S15 920 aa12.49□□□□□ -0.41
SHKBP1-213ENST00000597325 LRRC3Q9BY71 257 aa12.49□□□□□ -0.41
SHKBP1-213ENST00000597325 SLITRK6Q9H5Y7 841 aa12.49□□□□□ -0.41
SHKBP1-213ENST00000597325 ZMYM5Q9UJ78 669 aa12.49□□□□□ -0.41
SHKBP1-213ENST00000597325 NUDT5Q9UKK9 219 aa12.49□□□□□ -0.41
SHKBP1-213ENST00000597325 PIEZO2Q9H5I5 2752 aa12.49□□□□□ -0.41
SHKBP1-213ENST00000597325 ACACAQ13085 2346 aa12.49□□□□□ -0.41
SHKBP1-213ENST00000597325 CACNA1EQ15878 2313 aa12.49□□□□□ -0.41
SHKBP1-213ENST00000597325 ASCC3Q8N3C0 2202 aaKnown RBP12.49□□□□□ -0.41
SHKBP1-213ENST00000597325 OBSL1O75147 1896 aa12.48□□□□□ -0.41
SHKBP1-213ENST00000597325 SLC12A8A0AV02 714 aa12.48□□□□□ -0.41
SHKBP1-213ENST00000597325 LNP1A1A4G5 178 aa12.48□□□□□ -0.41
SHKBP1-213ENST00000597325 C2orf78A6NCI8 922 aa12.48□□□□□ -0.41
SHKBP1-213ENST00000597325 NRG2O14511 850 aaPredicted RBP12.48□□□□□ -0.41
SHKBP1-213ENST00000597325 MDM4O15151 490 aa12.48□□□□□ -0.41
SHKBP1-213ENST00000597325 MSI1O43347 362 aaKnown RBP12.48□□□□□ -0.41
SHKBP1-213ENST00000597325 OAS1P00973 400 aaKnown RBP12.48□□□□□ -0.41
SHKBP1-213ENST00000597325 IGLV3-25P01717 112 aa12.48□□□□□ -0.41
SHKBP1-213ENST00000597325 APOEP02649 317 aa12.48□□□□□ -0.41
SHKBP1-213ENST00000597325 MBL2P11226 248 aaPredicted RBP12.48□□□□□ -0.41
SHKBP1-213ENST00000597325 TFE3P19532 575 aaPredicted RBP12.48□□□□□ -0.41
SHKBP1-213ENST00000597325 CTNNA2P26232 953 aa12.48□□□□□ -0.41
SHKBP1-213ENST00000597325 MIPP30301 263 aa12.48□□□□□ -0.41
SHKBP1-213ENST00000597325 CTNNA1P35221 906 aaKnown RBP12.48□□□□□ -0.41
SHKBP1-213ENST00000597325 DNA2P51530 1060 aa12.48□□□□□ -0.41
SHKBP1-213ENST00000597325 HDAC4P56524 1084 aa12.48□□□□□ -0.41
SHKBP1-213ENST00000597325 PITX1P78337 314 aaPredicted RBP12.48□□□□□ -0.41
SHKBP1-213ENST00000597325 C19orf57Q0VDD7 668 aa12.48□□□□□ -0.41
SHKBP1-213ENST00000597325 ARL13BQ3SXY8 428 aa12.48□□□□□ -0.41
SHKBP1-213ENST00000597325 DNTTIP2Q5QJE6 756 aaKnown RBP12.48□□□□□ -0.41
SHKBP1-213ENST00000597325 GPR158Q5T848 1215 aa12.48□□□□□ -0.41
SHKBP1-213ENST00000597325 MEI1Q5TIA1 1274 aa12.48□□□□□ -0.41
SHKBP1-213ENST00000597325 LRRC38Q5VT99 294 aa12.48□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 20.4 ms