RNA–Protein interactions for RNA: ENST00000594862.1

SHKBP1-204, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 3

Gene SHKBP1, Length 623 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-204ENST00000594862 RPL6Q02878 288 aaKnown RBP18.34■□□□□ 0.53
SHKBP1-204ENST00000594862 NME3Q13232 169 aa18.34■□□□□ 0.53
SHKBP1-204ENST00000594862 CAMK2GQ13555 558 aaPredicted RBP18.34■□□□□ 0.53
SHKBP1-204ENST00000594862 SLC25A52Q3SY17 297 aa18.34■□□□□ 0.53
SHKBP1-204ENST00000594862 NAA35Q5VZE5 725 aa18.34■□□□□ 0.53
SHKBP1-204ENST00000594862 LYSMD4Q5XG99 296 aa18.34■□□□□ 0.53
SHKBP1-204ENST00000594862 APTXQ7Z2E3 356 aaKnown RBP18.34■□□□□ 0.53
SHKBP1-204ENST00000594862 DGLUCYQ7Z3D6 616 aa18.34■□□□□ 0.53
SHKBP1-204ENST00000594862 PRCCQ92733 491 aaPredicted RBP18.34■□□□□ 0.53
SHKBP1-204ENST00000594862 NT5C3BQ969T7 300 aa18.34■□□□□ 0.53
SHKBP1-204ENST00000594862 TTC17Q96AE7 1141 aa18.34■□□□□ 0.53
SHKBP1-204ENST00000594862 PRMT1Q99873 361 aaKnown RBP18.34■□□□□ 0.53
SHKBP1-204ENST00000594862 HSD3B7Q9H2F3 369 aa18.34■□□□□ 0.53
SHKBP1-204ENST00000594862 TMEM245Q9H330 911 aa18.34■□□□□ 0.53
SHKBP1-204ENST00000594862 COX16Q9P0S2 106 aa18.34■□□□□ 0.53
SHKBP1-204ENST00000594862 SUN2Q9UH99 717 aa18.34■□□□□ 0.53
SHKBP1-204ENST00000594862 MYO6Q9UM54 1294 aa18.34■□□□□ 0.53
SHKBP1-204ENST00000594862 IGHV1OR15-9A0A0B4J2B8 117 aa18.33■□□□□ 0.52
SHKBP1-204ENST00000594862 LOC105378220A0A1B0GUY1 285 aaPredicted RBP18.33■□□□□ 0.52
SHKBP1-204ENST00000594862 WASH3PC4AMC7 463 aa18.33■□□□□ 0.52
SHKBP1-204ENST00000594862 SLC30A4O14863 429 aa18.33■□□□□ 0.52
SHKBP1-204ENST00000594862 KHNYNO15037 678 aaKnown RBP18.33■□□□□ 0.52
SHKBP1-204ENST00000594862 EPHB6O15197 1021 aa18.33■□□□□ 0.52
SHKBP1-204ENST00000594862 NDUFS2O75306 463 aa18.33■□□□□ 0.52
SHKBP1-204ENST00000594862 CYP1A1P04798 512 aaPredicted RBP18.33■□□□□ 0.52
SHKBP1-204ENST00000594862 ACADMP11310 421 aa18.33■□□□□ 0.52
SHKBP1-204ENST00000594862 MMP8P22894 467 aa18.33■□□□□ 0.52
SHKBP1-204ENST00000594862 CD70P32970 193 aa18.33■□□□□ 0.52
SHKBP1-204ENST00000594862 SULT1E1P49888 294 aa18.33■□□□□ 0.52
SHKBP1-204ENST00000594862 ZBTB16Q05516 673 aa18.33■□□□□ 0.52
SHKBP1-204ENST00000594862 LMAN2Q12907 356 aa18.33■□□□□ 0.52
SHKBP1-204ENST00000594862 PPP1R2P3Q6NXS1 205 aa18.33■□□□□ 0.52
SHKBP1-204ENST00000594862 SYT12Q8IV01 421 aa18.33■□□□□ 0.52
SHKBP1-204ENST00000594862 OR2T3Q8NH03 318 aa18.33■□□□□ 0.52
SHKBP1-204ENST00000594862 SORCS1Q8WY21 1168 aa18.33■□□□□ 0.52
SHKBP1-204ENST00000594862 SIPA1Q96FS4 1042 aa18.33■□□□□ 0.52
SHKBP1-204ENST00000594862 USP36Q9P275 1121 aaKnown RBP18.33■□□□□ 0.52
SHKBP1-204ENST00000594862 EVLQ9UI08 416 aaPredicted RBP18.33■□□□□ 0.52
SHKBP1-204ENST00000594862 XPO7Q9UIA9 1087 aaKnown RBP18.33■□□□□ 0.52
SHKBP1-204ENST00000594862 MBD1Q9UIS9 605 aaPredicted RBP18.33■□□□□ 0.52
SHKBP1-204ENST00000594862 CACNA1BQ00975 2339 aa18.33■□□□□ 0.52
SHKBP1-204ENST00000594862 NUP205Q92621 2012 aa18.32■□□□□ 0.52
SHKBP1-204ENST00000594862 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa18.32■□□□□ 0.52
SHKBP1-204ENST00000594862 SRPRAP08240 638 aaKnown RBP18.32■□□□□ 0.52
SHKBP1-204ENST00000594862 C7P10643 843 aa18.32■□□□□ 0.52
SHKBP1-204ENST00000594862 FERP16591 822 aa18.32■□□□□ 0.52
SHKBP1-204ENST00000594862 CD6P30203 668 aa18.32■□□□□ 0.52
SHKBP1-204ENST00000594862 NSFP46459 744 aaKnown RBP18.32■□□□□ 0.52
SHKBP1-204ENST00000594862 CXCR3P49682 368 aa18.32■□□□□ 0.52
SHKBP1-204ENST00000594862 RNASE9P60153 205 aaKnown RBP18.32■□□□□ 0.52
SHKBP1-204ENST00000594862 FMO1Q01740 532 aa18.32■□□□□ 0.52
SHKBP1-204ENST00000594862 DEUP1Q05D60 604 aa18.32■□□□□ 0.52
SHKBP1-204ENST00000594862 SULT2A1Q06520 285 aa18.32■□□□□ 0.52
SHKBP1-204ENST00000594862 SFSWAPQ12872 951 aaKnown RBP18.32■□□□□ 0.52
SHKBP1-204ENST00000594862 PTPRNQ16849 979 aa18.32■□□□□ 0.52
SHKBP1-204ENST00000594862 PITRM1Q5JRX3 1037 aa18.32■□□□□ 0.52
SHKBP1-204ENST00000594862 RNF219Q5W0B1 726 aaPredicted RBP18.32■□□□□ 0.52
SHKBP1-204ENST00000594862 TMPRSS6Q8IU80 811 aa18.32■□□□□ 0.52
SHKBP1-204ENST00000594862 TMEFF1Q8IYR6 380 aa18.32■□□□□ 0.52
SHKBP1-204ENST00000594862 CFAP52Q8N1V2 620 aa18.32■□□□□ 0.52
SHKBP1-204ENST00000594862 WFDC5Q8TCV5 224 aa18.32■□□□□ 0.52
SHKBP1-204ENST00000594862 CYB5D2Q8WUJ1 264 aa18.32■□□□□ 0.52
SHKBP1-204ENST00000594862 SLC20A1Q8WUM9 679 aa18.32■□□□□ 0.52
SHKBP1-204ENST00000594862 CPA5Q8WXQ8 436 aa18.32■□□□□ 0.52
SHKBP1-204ENST00000594862 FOXJ1Q92949 421 aa18.32■□□□□ 0.52
SHKBP1-204ENST00000594862 LMLNQ96KR4 655 aa18.32■□□□□ 0.52
SHKBP1-204ENST00000594862 RPRD1AQ96P16 312 aaPredicted RBP18.32■□□□□ 0.52
SHKBP1-204ENST00000594862 WDCPQ9H6R7 721 aa18.32■□□□□ 0.52
SHKBP1-204ENST00000594862 CYP8B1Q9UNU6 501 aa18.32■□□□□ 0.52
SHKBP1-204ENST00000594862 TNRC6BQ9UPQ9 1833 aaKnown RBP18.31■□□□□ 0.52
SHKBP1-204ENST00000594862 GOLGA8SH3BPF8 625 aa18.31■□□□□ 0.52
SHKBP1-204ENST00000594862 PAGE1O75459 146 aa18.31■□□□□ 0.52
SHKBP1-204ENST00000594862 IGLV3-19P01714 112 aa18.31■□□□□ 0.52
SHKBP1-204ENST00000594862 CALB1P05937 261 aa18.31■□□□□ 0.52
SHKBP1-204ENST00000594862 ATP1A3P13637 1013 aa18.31■□□□□ 0.52
SHKBP1-204ENST00000594862 CSKP41240 450 aa18.31■□□□□ 0.52
SHKBP1-204ENST00000594862 CENPCQ03188 943 aa18.31■□□□□ 0.52
SHKBP1-204ENST00000594862 ARID5BQ14865 1188 aa18.31■□□□□ 0.52
SHKBP1-204ENST00000594862 SF3A2Q15428 464 aaKnown RBP18.31■□□□□ 0.52
SHKBP1-204ENST00000594862 SYCP2LQ5T4T6 812 aa18.31■□□□□ 0.52
SHKBP1-204ENST00000594862 PEAR1Q5VY43 1037 aaPredicted RBP18.31■□□□□ 0.52
SHKBP1-204ENST00000594862 MMS22LQ6ZRQ5 1243 aa18.31■□□□□ 0.52
SHKBP1-204ENST00000594862 DHX40Q8IX18 779 aaKnown RBP18.31■□□□□ 0.52
SHKBP1-204ENST00000594862 CCAR2Q8N163 923 aaKnown RBP18.31■□□□□ 0.52
SHKBP1-204ENST00000594862 CEP76Q8TAP6 659 aa18.31■□□□□ 0.52
SHKBP1-204ENST00000594862 PIGKQ92643 395 aa18.31■□□□□ 0.52
SHKBP1-204ENST00000594862 MKRN2Q9H000 416 aaKnown RBP18.31■□□□□ 0.52
SHKBP1-204ENST00000594862 PCED1AQ9H1Q7 454 aa18.31■□□□□ 0.52
SHKBP1-204ENST00000594862 ITM2CQ9NQX7 267 aa18.31■□□□□ 0.52
SHKBP1-204ENST00000594862 PIGVQ9NUD9 493 aa18.31■□□□□ 0.52
SHKBP1-204ENST00000594862 ARHGEF38Q9NXL2 777 aa18.31■□□□□ 0.52
SHKBP1-204ENST00000594862 SCML1Q9UN30 329 aa18.31■□□□□ 0.52
SHKBP1-204ENST00000594862 EPG5Q9HCE0 2579 aa18.3■□□□□ 0.52
SHKBP1-204ENST00000594862 CLDN11O75508 207 aa18.3■□□□□ 0.52
SHKBP1-204ENST00000594862 RDXP35241 583 aaKnown RBP18.3■□□□□ 0.52
SHKBP1-204ENST00000594862 NNMTP40261 264 aa18.3■□□□□ 0.52
SHKBP1-204ENST00000594862 COPAP53621 1224 aa18.3■□□□□ 0.52
SHKBP1-204ENST00000594862 GSCP56915 257 aaPredicted RBP18.3■□□□□ 0.52
SHKBP1-204ENST00000594862 ZNF33AQ06730 810 aa18.3■□□□□ 0.52
SHKBP1-204ENST00000594862 AUHQ13825 339 aaKnown RBP18.3■□□□□ 0.52
Retrieved 100 of 20,778 RNA–protein pairs in 20.2 ms