RNA–Protein interactions for RNA: ENST00000580002.5

SHMT1-207, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 2

Gene SHMT1, Length 1,759 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-207ENST00000580002 KLC2Q9H0B6 622 aa25.88■■□□□ 1.73
SHMT1-207ENST00000580002 S1PR5Q9H228 398 aa25.88■■□□□ 1.73
SHMT1-207ENST00000580002 ZSCAN5CA6NGD5 496 aaPredicted RBP25.87■■□□□ 1.73
SHMT1-207ENST00000580002 ZNF197O14709 1029 aa25.87■■□□□ 1.73
SHMT1-207ENST00000580002 HOXC13P31276 330 aa25.87■■□□□ 1.73
SHMT1-207ENST00000580002 AVPR1AP37288 418 aa25.87■■□□□ 1.73
SHMT1-207ENST00000580002 NRG1Q02297 640 aaPredicted RBP25.87■■□□□ 1.73
SHMT1-207ENST00000580002 CTC1Q2NKJ3 1217 aa25.87■■□□□ 1.73
SHMT1-207ENST00000580002 Q6ZNB5 142 aa25.87■■□□□ 1.73
SHMT1-207ENST00000580002 TFAP2DQ7Z6R9 452 aa25.87■■□□□ 1.73
SHMT1-207ENST00000580002 P3H4Q92791 437 aa25.87■■□□□ 1.73
SHMT1-207ENST00000580002 CELF6Q96J87 481 aaKnown RBP25.87■■□□□ 1.73
SHMT1-207ENST00000580002 PRICKLE1Q96MT3 831 aaPredicted RBP25.87■■□□□ 1.73
SHMT1-207ENST00000580002 CTIFO43310 598 aaKnown RBP25.87■■□□□ 1.73
SHMT1-207ENST00000580002 SLC11A2P49281 568 aa25.87■■□□□ 1.73
SHMT1-207ENST00000580002 NUMBP49757 651 aa25.87■■□□□ 1.73
SHMT1-207ENST00000580002 NOMO1Q15155 1222 aa25.87■■□□□ 1.73
SHMT1-207ENST00000580002 TRADDQ15628 312 aa25.87■■□□□ 1.73
SHMT1-207ENST00000580002 Q7L0L9 218 aa25.87■■□□□ 1.73
SHMT1-207ENST00000580002 ARID3BQ8IVW6 561 aaPredicted RBP25.87■■□□□ 1.73
SHMT1-207ENST00000580002 BBS7Q8IWZ6 715 aa25.87■■□□□ 1.73
SHMT1-207ENST00000580002 GLIS1Q8NBF1 620 aa25.87■■□□□ 1.73
SHMT1-207ENST00000580002 UBXN4Q92575 508 aa25.87■■□□□ 1.73
SHMT1-207ENST00000580002 LRRC3BQ96PB8 259 aa25.87■■□□□ 1.73
SHMT1-207ENST00000580002 TRIM51Q9BSJ1 452 aa25.87■■□□□ 1.73
SHMT1-207ENST00000580002 TMEM121Q9BTD3 319 aa25.87■■□□□ 1.73
SHMT1-207ENST00000580002 ANKZF1Q9H8Y5 726 aa25.87■■□□□ 1.73
SHMT1-207ENST00000580002 ARHGAP26Q9UNA1 814 aa25.87■■□□□ 1.73
SHMT1-207ENST00000580002 TGM2P21980 687 aa25.86■■□□□ 1.73
SHMT1-207ENST00000580002 EIF3EP60228 445 aaKnown RBP25.86■■□□□ 1.73
SHMT1-207ENST00000580002 RPS24P62847 133 aaKnown RBP25.86■■□□□ 1.73
SHMT1-207ENST00000580002 OASLQ15646 514 aaKnown RBP25.86■■□□□ 1.73
SHMT1-207ENST00000580002 ELF2Q15723 593 aa25.86■■□□□ 1.73
SHMT1-207ENST00000580002 NLRP14Q86W24 1093 aa25.86■■□□□ 1.73
SHMT1-207ENST00000580002 CCDC105Q8IYK2 499 aa25.86■■□□□ 1.73
SHMT1-207ENST00000580002 RPRD1AQ96P16 312 aaPredicted RBP25.86■■□□□ 1.73
SHMT1-207ENST00000580002 UNC80Q8N2C7 3258 aa25.85■■□□□ 1.73
SHMT1-207ENST00000580002 IGLV3-10A0A075B6K4 115 aa25.85■■□□□ 1.73
SHMT1-207ENST00000580002 TMEM265A0A087WTH1 108 aa25.85■■□□□ 1.73
SHMT1-207ENST00000580002 DRGXA6NNA5 263 aa25.85■■□□□ 1.73
SHMT1-207ENST00000580002 ETS1P14921 441 aa25.85■■□□□ 1.73
SHMT1-207ENST00000580002 FSHRP23945 695 aa25.85■■□□□ 1.73
SHMT1-207ENST00000580002 DDX6P26196 483 aaKnown RBP eCLIP25.85■■□□□ 1.73
SHMT1-207ENST00000580002 CHRNA3P32297 505 aa25.85■■□□□ 1.73
SHMT1-207ENST00000580002 BYSLQ13895 437 aaKnown RBP25.85■■□□□ 1.73
SHMT1-207ENST00000580002 PAFAH1B3Q15102 231 aaKnown RBP25.85■■□□□ 1.73
SHMT1-207ENST00000580002 TMCO3Q6UWJ1 677 aa25.85■■□□□ 1.73
SHMT1-207ENST00000580002 GET4Q7L5D6 327 aaPredicted RBP25.85■■□□□ 1.73
SHMT1-207ENST00000580002 NPAS3Q8IXF0 933 aa25.85■■□□□ 1.73
SHMT1-207ENST00000580002 RSPRY1Q96DX4 576 aa25.85■■□□□ 1.73
SHMT1-207ENST00000580002 ADAM7Q9H2U9 754 aa25.85■■□□□ 1.73
SHMT1-207ENST00000580002 TDP1Q9NUW8 608 aa25.85■■□□□ 1.73
SHMT1-207ENST00000580002 STIM2Q9P246 746 aa25.85■■□□□ 1.73
SHMT1-207ENST00000580002 ZFP37Q9Y6Q3 630 aaPredicted RBP25.85■■□□□ 1.73
SHMT1-207ENST00000580002 GDF10P55107 478 aa25.84■■□□□ 1.73
SHMT1-207ENST00000580002 TRIP13Q15645 432 aaPredicted RBP25.84■■□□□ 1.73
SHMT1-207ENST00000580002 ADGRF1Q5T601 910 aa25.84■■□□□ 1.73
SHMT1-207ENST00000580002 C8orf74Q6P047 294 aa25.84■■□□□ 1.73
SHMT1-207ENST00000580002 ZSCAN18Q8TBC5 510 aaPredicted RBP25.84■■□□□ 1.73
SHMT1-207ENST00000580002 DEPDC1BQ8WUY9 529 aa25.84■■□□□ 1.73
SHMT1-207ENST00000580002 FGF13Q92913 245 aa25.84■■□□□ 1.73
SHMT1-207ENST00000580002 AZIN2Q96A70 460 aa25.84■■□□□ 1.73
SHMT1-207ENST00000580002 TMEM51Q9NW97 253 aa25.84■■□□□ 1.73
SHMT1-207ENST00000580002 PCYOX1Q9UHG3 505 aa25.84■■□□□ 1.73
SHMT1-207ENST00000580002 BRWD1Q9NSI6 2320 aa25.84■■□□□ 1.73
SHMT1-207ENST00000580002 NUP205Q92621 2012 aa25.84■■□□□ 1.73
SHMT1-207ENST00000580002 RBP3P10745 1247 aa25.84■■□□□ 1.73
SHMT1-207ENST00000580002 POU3F3P20264 500 aaPredicted RBP25.84■■□□□ 1.73
SHMT1-207ENST00000580002 VIPR2P41587 438 aa25.84■■□□□ 1.73
SHMT1-207ENST00000580002 LRRC31Q6UY01 552 aa25.84■■□□□ 1.73
SHMT1-207ENST00000580002 HTR3DQ70Z44 454 aa25.84■■□□□ 1.73
SHMT1-207ENST00000580002 CCDC114Q96M63 670 aa25.84■■□□□ 1.73
SHMT1-207ENST00000580002 PNKPQ96T60 521 aa25.84■■□□□ 1.73
SHMT1-207ENST00000580002 LGMNQ99538 433 aa25.84■■□□□ 1.73
SHMT1-207ENST00000580002 NOL6Q9H6R4 1146 aaKnown RBP25.84■■□□□ 1.73
SHMT1-207ENST00000580002 ZNF212Q9UDV6 495 aa25.84■■□□□ 1.73
SHMT1-207ENST00000580002 ZNF148Q9UQR1 794 aa25.84■■□□□ 1.73
SHMT1-207ENST00000580002 SH3BP1Q9Y3L3 701 aa25.84■■□□□ 1.73
SHMT1-207ENST00000580002 UQCRHLA0A096LP55 91 aa25.83■■□□□ 1.73
SHMT1-207ENST00000580002 F5H5T6 163 aa25.83■■□□□ 1.73
SHMT1-207ENST00000580002 H7C0C1 242 aa25.83■■□□□ 1.73
SHMT1-207ENST00000580002 UQCRHP07919 91 aa25.83■■□□□ 1.73
SHMT1-207ENST00000580002 ZSCAN5DPP0CG00 497 aa25.83■■□□□ 1.73
SHMT1-207ENST00000580002 ZFXP17010 805 aaPredicted RBP25.83■■□□□ 1.73
SHMT1-207ENST00000580002 ATP5OP48047 213 aa25.83■■□□□ 1.73
SHMT1-207ENST00000580002 DR1Q01658 176 aa25.83■■□□□ 1.73
SHMT1-207ENST00000580002 PRPF38BQ5VTL8 546 aaKnown RBP25.83■■□□□ 1.73
SHMT1-207ENST00000580002 ARHGAP12Q8IWW6 846 aa25.83■■□□□ 1.73
SHMT1-207ENST00000580002 TTC13Q8NBP0 860 aa25.83■■□□□ 1.73
SHMT1-207ENST00000580002 BHMTQ93088 406 aa25.83■■□□□ 1.73
SHMT1-207ENST00000580002 NKD2Q969F2 451 aaPredicted RBP25.83■■□□□ 1.73
SHMT1-207ENST00000580002 ZYG11BQ9C0D3 744 aa25.83■■□□□ 1.73
SHMT1-207ENST00000580002 STOML2Q9UJZ1 356 aa25.83■■□□□ 1.73
SHMT1-207ENST00000580002 PRUNE2Q8WUY3 3088 aa25.83■■□□□ 1.72
SHMT1-207ENST00000580002 PFKLP17858 780 aa25.82■■□□□ 1.72
SHMT1-207ENST00000580002 FNTAP49354 379 aa25.82■■□□□ 1.72
SHMT1-207ENST00000580002 ARHGAP36Q6ZRI8 547 aa25.82■■□□□ 1.72
SHMT1-207ENST00000580002 JAMLQ86YT9 394 aa25.82■■□□□ 1.72
SHMT1-207ENST00000580002 RTL3Q8N8U3 475 aaKnown RBP25.82■■□□□ 1.72
SHMT1-207ENST00000580002 OR52K2Q8NGK3 314 aa25.82■■□□□ 1.72
Retrieved 100 of 20,778 RNA–protein pairs in 48.8 ms