RNA–Protein interactions for RNA: ENST00000576149.5

VPS53-220, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 5

Gene VPS53, Length 2,444 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-220ENST00000576149 ZBTB16Q05516 673 aa10.35□□□□□ -0.75
VPS53-220ENST00000576149 IFRD2Q12894 506 aaPredicted RBP10.35□□□□□ -0.75
VPS53-220ENST00000576149 KRT72Q14CN4 511 aa10.35□□□□□ -0.75
VPS53-220ENST00000576149 ACCSLQ4AC99 568 aa10.35□□□□□ -0.75
VPS53-220ENST00000576149 FAM91A1Q658Y4 838 aa10.35□□□□□ -0.75
VPS53-220ENST00000576149 PACS1Q6VY07 963 aa10.35□□□□□ -0.75
VPS53-220ENST00000576149 KYAT3Q6YP21 454 aaKnown RBP10.35□□□□□ -0.75
VPS53-220ENST00000576149 PDZD4Q76G19 769 aaPredicted RBP10.35□□□□□ -0.75
VPS53-220ENST00000576149 CACTIN-AS1Q8N1I8 211 aa10.35□□□□□ -0.75
VPS53-220ENST00000576149 DDX51Q8N8A6 666 aaKnown RBP eCLIP10.35□□□□□ -0.75
VPS53-220ENST00000576149 C3orf58Q8NDZ4 430 aa10.35□□□□□ -0.75
VPS53-220ENST00000576149 ADAM32Q8TC27 787 aa10.35□□□□□ -0.75
VPS53-220ENST00000576149 PGBD4Q96DM1 585 aa10.35□□□□□ -0.75
VPS53-220ENST00000576149 ARL8BQ9NVJ2 186 aa10.35□□□□□ -0.75
VPS53-220ENST00000576149 MIOSQ9NXC5 875 aa10.35□□□□□ -0.75
VPS53-220ENST00000576149 NOP53Q9NZM5 478 aaKnown RBP10.35□□□□□ -0.75
VPS53-220ENST00000576149 TIMM13Q9Y5L4 95 aaPredicted RBP10.35□□□□□ -0.75
VPS53-220ENST00000576149 TRPV2Q9Y5S1 764 aa10.35□□□□□ -0.75
VPS53-220ENST00000576149 MYADML2A6NDP7 307 aa10.35□□□□□ -0.75
VPS53-220ENST00000576149 C2orf71A6NGG8 1288 aa10.35□□□□□ -0.75
VPS53-220ENST00000576149 HHLA1C9JL84 531 aa10.35□□□□□ -0.75
VPS53-220ENST00000576149 M0QZ92 97 aa10.35□□□□□ -0.75
VPS53-220ENST00000576149 KCNK1O00180 336 aa10.35□□□□□ -0.75
VPS53-220ENST00000576149 NCAM2O15394 837 aa10.35□□□□□ -0.75
VPS53-220ENST00000576149 CCDC22O60826 627 aa10.35□□□□□ -0.75
VPS53-220ENST00000576149 SNNO75324 88 aaPredicted RBP10.35□□□□□ -0.75
VPS53-220ENST00000576149 AMHP03971 560 aa10.35□□□□□ -0.75
VPS53-220ENST00000576149 ALDOAP04075 364 aaKnown RBP10.35□□□□□ -0.75
VPS53-220ENST00000576149 NCAM1P13591 858 aa10.35□□□□□ -0.75
VPS53-220ENST00000576149 PTPN3P26045 913 aa10.35□□□□□ -0.75
VPS53-220ENST00000576149 CDK18Q07002 472 aa10.35□□□□□ -0.75
VPS53-220ENST00000576149 TAF1CQ15572 869 aaPredicted RBP10.35□□□□□ -0.75
VPS53-220ENST00000576149 GPR162Q16538 588 aa10.35□□□□□ -0.75
VPS53-220ENST00000576149 DBN1Q16643 649 aa10.35□□□□□ -0.75
VPS53-220ENST00000576149 HSF5Q4G112 596 aaPredicted RBP10.35□□□□□ -0.75
VPS53-220ENST00000576149 BSPRYQ5W0U4 402 aa10.35□□□□□ -0.75
VPS53-220ENST00000576149 C17orf99Q6UX52 265 aa10.35□□□□□ -0.75
VPS53-220ENST00000576149 PID1Q7Z2X4 250 aa10.35□□□□□ -0.75
VPS53-220ENST00000576149 PRR11Q96HE9 360 aaPredicted RBP10.35□□□□□ -0.75
VPS53-220ENST00000576149 NSL1Q96IY1 281 aa10.35□□□□□ -0.75
VPS53-220ENST00000576149 APBA2Q99767 749 aa10.35□□□□□ -0.75
VPS53-220ENST00000576149 MIPEPQ99797 713 aa10.35□□□□□ -0.75
VPS53-220ENST00000576149 XPNPEP3Q9NQH7 507 aa10.35□□□□□ -0.75
VPS53-220ENST00000576149 CHST12Q9NRB3 414 aa10.35□□□□□ -0.75
VPS53-220ENST00000576149 SYBUQ9NX95 663 aa10.35□□□□□ -0.75
VPS53-220ENST00000576149 RRN3Q9NYV6 651 aa10.35□□□□□ -0.75
VPS53-220ENST00000576149 SLC17A6Q9P2U8 582 aa10.35□□□□□ -0.75
VPS53-220ENST00000576149 CDH9Q9ULB4 789 aa10.35□□□□□ -0.75
VPS53-220ENST00000576149 RPL26L1Q9UNX3 145 aaKnown RBP10.35□□□□□ -0.75
VPS53-220ENST00000576149 PTCH2Q9Y6C5 1203 aa10.35□□□□□ -0.75
VPS53-220ENST00000576149 PARNO95453 639 aaKnown RBP10.34□□□□□ -0.75
VPS53-220ENST00000576149 TOP3BO95985 862 aaKnown RBP10.34□□□□□ -0.75
VPS53-220ENST00000576149 GSRP00390 522 aa10.34□□□□□ -0.75
VPS53-220ENST00000576149 LTFP02788 710 aa10.34□□□□□ -0.75
VPS53-220ENST00000576149 USP17L7P0C7H9 530 aa10.34□□□□□ -0.75
VPS53-220ENST00000576149 IBSPP21815 317 aaPredicted RBP10.34□□□□□ -0.75
VPS53-220ENST00000576149 TPI1P60174 286 aa10.34□□□□□ -0.75
VPS53-220ENST00000576149 PPIDQ08752 370 aaKnown RBP10.34□□□□□ -0.75
VPS53-220ENST00000576149 DSTYKQ6XUX3 929 aa10.34□□□□□ -0.75
VPS53-220ENST00000576149 BHLHA9Q7RTU4 235 aa10.34□□□□□ -0.75
VPS53-220ENST00000576149 LPPQ93052 612 aa10.34□□□□□ -0.75
VPS53-220ENST00000576149 GORASP1Q9BQQ3 440 aa10.34□□□□□ -0.75
VPS53-220ENST00000576149 BTBD10Q9BSF8 475 aa10.34□□□□□ -0.75
VPS53-220ENST00000576149 KLHL8Q9P2G9 620 aaPredicted RBP10.34□□□□□ -0.75
VPS53-220ENST00000576149 C15orf41Q9Y2V0 281 aa10.34□□□□□ -0.75
VPS53-220ENST00000576149 CCDC195A0A1B0GUA6 201 aa10.34□□□□□ -0.75
VPS53-220ENST00000576149 ARL5CA6NH57 179 aa10.34□□□□□ -0.75
VPS53-220ENST00000576149 FCHO1O14526 889 aa10.34□□□□□ -0.75
VPS53-220ENST00000576149 TPP1O14773 563 aa10.34□□□□□ -0.75
VPS53-220ENST00000576149 KPNA6O60684 536 aa10.34□□□□□ -0.75
VPS53-220ENST00000576149 POLBP06746 335 aa10.34□□□□□ -0.75
VPS53-220ENST00000576149 ITGA2BP08514 1039 aa10.34□□□□□ -0.75
VPS53-220ENST00000576149 AKR1A1P14550 325 aa10.34□□□□□ -0.75
VPS53-220ENST00000576149 GM2AP17900 193 aa10.34□□□□□ -0.75
VPS53-220ENST00000576149 CALB2P22676 271 aa10.34□□□□□ -0.75
VPS53-220ENST00000576149 RPL9P32969 192 aaKnown RBP10.34□□□□□ -0.75
VPS53-220ENST00000576149 MAP2K2P36507 400 aa10.34□□□□□ -0.75
VPS53-220ENST00000576149 ARL13BQ3SXY8 428 aa10.34□□□□□ -0.75
VPS53-220ENST00000576149 INTS6LQ5JSJ4 861 aaKnown RBP10.34□□□□□ -0.75
VPS53-220ENST00000576149 SPANXN3Q5MJ09 141 aa10.34□□□□□ -0.75
VPS53-220ENST00000576149 WASHC2DQ5SRD0 308 aa10.34□□□□□ -0.75
VPS53-220ENST00000576149 CST9Q5W186 159 aa10.34□□□□□ -0.75
VPS53-220ENST00000576149 TLDC1Q6P9B6 456 aa10.34□□□□□ -0.75
VPS53-220ENST00000576149 TTC7BQ86TV6 843 aa10.34□□□□□ -0.75
VPS53-220ENST00000576149 RPAINQ86UA6 219 aa10.34□□□□□ -0.75
VPS53-220ENST00000576149 CRLF3Q8IUI8 442 aa10.34□□□□□ -0.75
VPS53-220ENST00000576149 ARID3BQ8IVW6 561 aaPredicted RBP10.34□□□□□ -0.75
VPS53-220ENST00000576149 RNF217Q8TC41 542 aa10.34□□□□□ -0.75
VPS53-220ENST00000576149 SMARCD1Q96GM5 515 aa10.34□□□□□ -0.75
VPS53-220ENST00000576149 COLEC11Q9BWP8 271 aa10.34□□□□□ -0.75
VPS53-220ENST00000576149 CADM1Q9BY67 442 aaKnown RBP10.34□□□□□ -0.75
VPS53-220ENST00000576149 C20orf27Q9GZN8 174 aa10.34□□□□□ -0.75
VPS53-220ENST00000576149 SENP6Q9GZR1 1112 aaPredicted RBP10.34□□□□□ -0.75
VPS53-220ENST00000576149 BRD8Q9H0E9 1235 aa10.34□□□□□ -0.75
VPS53-220ENST00000576149 ZNF395Q9H8N7 513 aaPredicted RBP10.34□□□□□ -0.75
VPS53-220ENST00000576149 CSNK1G1Q9HCP0 422 aa10.34□□□□□ -0.75
VPS53-220ENST00000576149 DDIT4Q9NX09 232 aa10.34□□□□□ -0.75
VPS53-220ENST00000576149 EMCNQ9ULC0 261 aa10.34□□□□□ -0.75
VPS53-220ENST00000576149 GIT1Q9Y2X7 761 aa10.34□□□□□ -0.75
VPS53-220ENST00000576149 PSAT1Q9Y617 370 aa10.34□□□□□ -0.75
Retrieved 100 of 20,778 RNA–protein pairs in 28.2 ms