RNA–Protein interactions for RNA: ENST00000571805.5

VPS53-211, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS53, Length 2,356 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-211ENST00000571805 IL1RAPL1Q9NZN1 696 aa23.39■■□□□ 1.33
VPS53-211ENST00000571805 DNAJC16Q9Y2G8 782 aa23.39■■□□□ 1.33
VPS53-211ENST00000571805 PPP1R12AO14974 1030 aaPredicted RBP23.38■■□□□ 1.33
VPS53-211ENST00000571805 NPR3P17342 541 aa23.38■■□□□ 1.33
VPS53-211ENST00000571805 UBAP2LQ14157 1087 aaKnown RBP23.38■■□□□ 1.33
VPS53-211ENST00000571805 RFX8Q6ZV50 586 aa23.38■■□□□ 1.33
VPS53-211ENST00000571805 WDR75Q8IWA0 830 aaKnown RBP23.38■■□□□ 1.33
VPS53-211ENST00000571805 NME8Q8N427 588 aa23.38■■□□□ 1.33
VPS53-211ENST00000571805 TOP6BLQ8N6T0 577 aa23.38■■□□□ 1.33
VPS53-211ENST00000571805 RNF169Q8NCN4 708 aa23.38■■□□□ 1.33
VPS53-211ENST00000571805 ARRDC4Q8NCT1 418 aa23.38■■□□□ 1.33
VPS53-211ENST00000571805 FAM161BQ96MY7 647 aa23.38■■□□□ 1.33
VPS53-211ENST00000571805 FERMT1Q9BQL6 677 aa23.38■■□□□ 1.33
VPS53-211ENST00000571805 SLC45A1Q9Y2W3 748 aa23.38■■□□□ 1.33
VPS53-211ENST00000571805 A6NHS1 94 aa23.38■■□□□ 1.33
VPS53-211ENST00000571805 DYNC1LI2O43237 492 aaPredicted RBP23.38■■□□□ 1.33
VPS53-211ENST00000571805 TM7SF2O76062 418 aa23.38■■□□□ 1.33
VPS53-211ENST00000571805 PROCP04070 461 aa23.38■■□□□ 1.33
VPS53-211ENST00000571805 ERVK-10P10266 1014 aa23.38■■□□□ 1.33
VPS53-211ENST00000571805 MLH1P40692 756 aa23.38■■□□□ 1.33
VPS53-211ENST00000571805 INSCQ1MX18 579 aa23.38■■□□□ 1.33
VPS53-211ENST00000571805 MUM1Q2TAK8 710 aa23.38■■□□□ 1.33
VPS53-211ENST00000571805 PPM1JQ5JR12 505 aa23.38■■□□□ 1.33
VPS53-211ENST00000571805 CES3Q6UWW8 571 aa23.38■■□□□ 1.33
VPS53-211ENST00000571805 HFE2Q6ZVN8 426 aa23.38■■□□□ 1.33
VPS53-211ENST00000571805 ATP2A3Q93084 1043 aa23.38■■□□□ 1.33
VPS53-211ENST00000571805 WNT8BQ93098 351 aa23.38■■□□□ 1.33
VPS53-211ENST00000571805 FCRL3Q96P31 734 aaPredicted RBP23.38■■□□□ 1.33
VPS53-211ENST00000571805 LBHD1Q9BQE6 289 aaPredicted RBP23.38■■□□□ 1.33
VPS53-211ENST00000571805 GORASP1Q9BQQ3 440 aa23.38■■□□□ 1.33
VPS53-211ENST00000571805 CORO1CQ9ULV4 474 aaPredicted RBP23.38■■□□□ 1.33
VPS53-211ENST00000571805 SORCS3Q9UPU3 1222 aa23.38■■□□□ 1.33
VPS53-211ENST00000571805 F8W8V4 182 aa23.37■■□□□ 1.33
VPS53-211ENST00000571805 EEF2KO00418 725 aaKnown RBP23.37■■□□□ 1.33
VPS53-211ENST00000571805 FYNP06241 537 aa23.37■■□□□ 1.33
VPS53-211ENST00000571805 POLBP06746 335 aa23.37■■□□□ 1.33
VPS53-211ENST00000571805 PTPN1P18031 435 aaKnown RBP23.37■■□□□ 1.33
VPS53-211ENST00000571805 AOC1P19801 751 aa23.37■■□□□ 1.33
VPS53-211ENST00000571805 ACAT1P24752 427 aaKnown RBP23.37■■□□□ 1.33
VPS53-211ENST00000571805 ADAM17P78536 824 aa23.37■■□□□ 1.33
VPS53-211ENST00000571805 PDE1BQ01064 536 aa23.37■■□□□ 1.33
VPS53-211ENST00000571805 IFRD2Q12894 506 aaPredicted RBP23.37■■□□□ 1.33
VPS53-211ENST00000571805 NME3Q13232 169 aa23.37■■□□□ 1.33
VPS53-211ENST00000571805 CLEC20AQ6ZU45 233 aa23.37■■□□□ 1.33
VPS53-211ENST00000571805 SCUBE1Q8IWY4 988 aa23.37■■□□□ 1.33
VPS53-211ENST00000571805 NPLOC4Q8TAT6 608 aa23.37■■□□□ 1.33
VPS53-211ENST00000571805 STMN2Q93045 179 aa23.37■■□□□ 1.33
VPS53-211ENST00000571805 C1orf21Q9H246 121 aa23.37■■□□□ 1.33
VPS53-211ENST00000571805 STAP1Q9ULZ2 295 aa23.37■■□□□ 1.33
VPS53-211ENST00000571805 FAM72CH0Y354 149 aa23.37■■□□□ 1.33
VPS53-211ENST00000571805 EPHX2P34913 555 aa23.37■■□□□ 1.33
VPS53-211ENST00000571805 DEUP1Q05D60 604 aa23.37■■□□□ 1.33
VPS53-211ENST00000571805 OLIG2Q13516 323 aa23.37■■□□□ 1.33
VPS53-211ENST00000571805 RABGAP1LQ5R372 815 aa23.37■■□□□ 1.33
VPS53-211ENST00000571805 FAM72AQ5TYM5 149 aa23.37■■□□□ 1.33
VPS53-211ENST00000571805 FAM72DQ6L9T8 149 aa23.37■■□□□ 1.33
VPS53-211ENST00000571805 PID1Q7Z2X4 250 aa23.37■■□□□ 1.33
VPS53-211ENST00000571805 RASSF3Q86WH2 238 aa23.37■■□□□ 1.33
VPS53-211ENST00000571805 FAM72BQ86X60 149 aa23.37■■□□□ 1.33
VPS53-211ENST00000571805 C10orf107Q8IVU9 208 aa23.37■■□□□ 1.33
VPS53-211ENST00000571805 DTX3LQ8TDB6 740 aa23.37■■□□□ 1.33
VPS53-211ENST00000571805 CERS2Q96G23 380 aa23.37■■□□□ 1.33
VPS53-211ENST00000571805 PGLYRP2Q96PD5 576 aa23.37■■□□□ 1.33
VPS53-211ENST00000571805 TMEM216Q9P0N5 145 aa23.37■■□□□ 1.33
VPS53-211ENST00000571805 ZFATQ9P243 1243 aa23.37■■□□□ 1.33
VPS53-211ENST00000571805 SERPINE1P05121 402 aa23.36■■□□□ 1.33
VPS53-211ENST00000571805 PAX7P23759 505 aa23.36■■□□□ 1.33
VPS53-211ENST00000571805 SMAD1Q15797 465 aaKnown RBP23.36■■□□□ 1.33
VPS53-211ENST00000571805 SPANXN3Q5MJ09 141 aa23.36■■□□□ 1.33
VPS53-211ENST00000571805 KIAA0319Q5VV43 1072 aa23.36■■□□□ 1.33
VPS53-211ENST00000571805 LRRC74BQ6ZQY2 392 aa23.36■■□□□ 1.33
VPS53-211ENST00000571805 NET1Q7Z628 596 aaPredicted RBP23.36■■□□□ 1.33
VPS53-211ENST00000571805 SMG8Q8ND04 991 aaKnown RBP23.36■■□□□ 1.33
VPS53-211ENST00000571805 MICAL1Q8TDZ2 1067 aa23.36■■□□□ 1.33
VPS53-211ENST00000571805 SORT1Q99523 831 aa23.36■■□□□ 1.33
VPS53-211ENST00000571805 STN1Q9H668 368 aaKnown RBP23.36■■□□□ 1.33
VPS53-211ENST00000571805 IPPQ9Y573 584 aa23.36■■□□□ 1.33
VPS53-211ENST00000571805 RPS6KL1Q9Y6S9 549 aa23.36■■□□□ 1.33
VPS53-211ENST00000571805 KCNK1O00180 336 aa23.36■■□□□ 1.33
VPS53-211ENST00000571805 IGFBP6P24592 240 aaPredicted RBP23.36■■□□□ 1.33
VPS53-211ENST00000571805 ARRB2P32121 409 aa23.36■■□□□ 1.33
VPS53-211ENST00000571805 GP5P40197 560 aa23.36■■□□□ 1.33
VPS53-211ENST00000571805 DNAL1Q4LDG9 190 aa23.36■■□□□ 1.33
VPS53-211ENST00000571805 MAVSQ7Z434 540 aa23.36■■□□□ 1.33
VPS53-211ENST00000571805 ULK2Q8IYT8 1036 aa23.36■■□□□ 1.33
VPS53-211ENST00000571805 OR52K1Q8NGK4 314 aa23.36■■□□□ 1.33
VPS53-211ENST00000571805 SCG3Q8WXD2 468 aaKnown RBP23.36■■□□□ 1.33
VPS53-211ENST00000571805 CLPTM1LQ96KA5 538 aa23.36■■□□□ 1.33
VPS53-211ENST00000571805 OSBPL1AQ9BXW6 950 aa23.36■■□□□ 1.33
VPS53-211ENST00000571805 LRRC4Q9HBW1 653 aa23.36■■□□□ 1.33
VPS53-211ENST00000571805 ANLNQ9NQW6 1124 aa23.36■■□□□ 1.33
VPS53-211ENST00000571805 TRIP12Q14669 1992 aaPredicted RBP23.36■■□□□ 1.33
VPS53-211ENST00000571805 I6L893 689 aaPredicted RBP23.35■■□□□ 1.33
VPS53-211ENST00000571805 NRP1O14786 923 aa23.35■■□□□ 1.33
VPS53-211ENST00000571805 ADRA1BP35368 520 aa23.35■■□□□ 1.33
VPS53-211ENST00000571805 CPOXP36551 454 aa23.35■■□□□ 1.33
VPS53-211ENST00000571805 GMPRP36959 345 aa23.35■■□□□ 1.33
VPS53-211ENST00000571805 FAM136AQ96C01 138 aa23.35■■□□□ 1.33
VPS53-211ENST00000571805 CPNE1Q99829 537 aa23.35■■□□□ 1.33
VPS53-211ENST00000571805 UNCXA6NJT0 531 aa23.35■■□□□ 1.33
Retrieved 100 of 20,778 RNA–protein pairs in 31.2 ms