RNA–Protein interactions for RNA: ENST00000569950.1

VPS35-211, Transcript of VPS35, retromer complex component, humanhuman

TSL 5

Gene VPS35, Length 1,096 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-211ENST00000569950 DPYSL3Q14195 570 aa9.59□□□□□ -0.87
VPS35-211ENST00000569950 ITPRIPL2Q3MIP1 535 aa9.59□□□□□ -0.87
VPS35-211ENST00000569950 MPP7Q5T2T1 576 aa9.59□□□□□ -0.87
VPS35-211ENST00000569950 LRRC38Q5VT99 294 aa9.59□□□□□ -0.87
VPS35-211ENST00000569950 TMEM215Q68D42 235 aa9.59□□□□□ -0.87
VPS35-211ENST00000569950 TPGS1Q6ZTW0 290 aa9.59□□□□□ -0.87
VPS35-211ENST00000569950 CHSY1Q86X52 802 aa9.59□□□□□ -0.87
VPS35-211ENST00000569950 PSTKQ8IV42 348 aaKnown RBP9.59□□□□□ -0.87
VPS35-211ENST00000569950 ATP2A3Q93084 1043 aa9.59□□□□□ -0.87
VPS35-211ENST00000569950 HES6Q96HZ4 224 aa9.59□□□□□ -0.87
VPS35-211ENST00000569950 ZWILCHQ9H900 591 aa9.59□□□□□ -0.87
VPS35-211ENST00000569950 ETNK2Q9NVF9 386 aa9.59□□□□□ -0.87
VPS35-211ENST00000569950 KLHL11Q9NVR0 708 aa9.59□□□□□ -0.87
VPS35-211ENST00000569950 TMEM51Q9NW97 253 aa9.59□□□□□ -0.87
VPS35-211ENST00000569950 THG1LQ9NWX6 298 aaKnown RBP9.59□□□□□ -0.87
VPS35-211ENST00000569950 MPP6Q9NZW5 540 aa9.59□□□□□ -0.87
VPS35-211ENST00000569950 CWC15Q9P013 229 aaKnown RBP9.59□□□□□ -0.87
VPS35-211ENST00000569950 INTS6Q9UL03 887 aaKnown RBP9.59□□□□□ -0.87
VPS35-211ENST00000569950 GUCA1BQ9UMX6 200 aa9.59□□□□□ -0.87
VPS35-211ENST00000569950 PACSIN2Q9UNF0 486 aaPredicted RBP9.59□□□□□ -0.87
VPS35-211ENST00000569950 OR51B4Q9Y5P0 310 aa9.59□□□□□ -0.87
VPS35-211ENST00000569950 CACNA1IQ9P0X4 2223 aa9.59□□□□□ -0.87
VPS35-211ENST00000569950 A0A0A0MRY4 1105 aa9.58□□□□□ -0.88
VPS35-211ENST00000569950 WASH4PA8MWX3 477 aa9.58□□□□□ -0.88
VPS35-211ENST00000569950 SPECC1L-ADORA2AF8WAN1 911 aa9.58□□□□□ -0.88
VPS35-211ENST00000569950 DCLK1O15075 740 aa9.58□□□□□ -0.88
VPS35-211ENST00000569950 PRPSAP2O60256 369 aa9.58□□□□□ -0.88
VPS35-211ENST00000569950 TULP3O75386 442 aa9.58□□□□□ -0.88
VPS35-211ENST00000569950 RNF8O76064 485 aa9.58□□□□□ -0.88
VPS35-211ENST00000569950 NFATC1O95644 943 aa9.58□□□□□ -0.88
VPS35-211ENST00000569950 FTCDO95954 541 aa9.58□□□□□ -0.88
VPS35-211ENST00000569950 PDGFBP01127 241 aaPredicted RBP9.58□□□□□ -0.88
VPS35-211ENST00000569950 ADH5P11766 374 aa9.58□□□□□ -0.88
VPS35-211ENST00000569950 GOT1P17174 413 aa9.58□□□□□ -0.88
VPS35-211ENST00000569950 CTNNA2P26232 953 aa9.58□□□□□ -0.88
VPS35-211ENST00000569950 HLA-FP30511 346 aa9.58□□□□□ -0.88
VPS35-211ENST00000569950 CHKAP35790 457 aa9.58□□□□□ -0.88
VPS35-211ENST00000569950 SLC1A1P43005 524 aa9.58□□□□□ -0.88
VPS35-211ENST00000569950 MPPE1Q53F39 396 aa9.58□□□□□ -0.88
VPS35-211ENST00000569950 SLC44A4Q53GD3 710 aa9.58□□□□□ -0.88
VPS35-211ENST00000569950 BOLA3Q53S33 107 aa9.58□□□□□ -0.88
VPS35-211ENST00000569950 AFMIDQ63HM1 303 aa9.58□□□□□ -0.88
VPS35-211ENST00000569950 FSTL4Q6MZW2 842 aa9.58□□□□□ -0.88
VPS35-211ENST00000569950 AADACL2Q6P093 401 aa9.58□□□□□ -0.88
VPS35-211ENST00000569950 SND1Q7KZF4 910 aaKnown RBP eCLIP9.58□□□□□ -0.88
VPS35-211ENST00000569950 DAAM2Q86T65 1068 aa9.58□□□□□ -0.88
VPS35-211ENST00000569950 TP53INP2Q8IXH6 220 aa9.58□□□□□ -0.88
VPS35-211ENST00000569950 NPWQ8N729 165 aa9.58□□□□□ -0.88
VPS35-211ENST00000569950 PQLC3Q8N755 202 aa9.58□□□□□ -0.88
VPS35-211ENST00000569950 DDX51Q8N8A6 666 aaKnown RBP eCLIP9.58□□□□□ -0.88
VPS35-211ENST00000569950 HJURPQ8NCD3 748 aaPredicted RBP9.58□□□□□ -0.88
VPS35-211ENST00000569950 PCDH19Q8TAB3 1148 aa9.58□□□□□ -0.88
VPS35-211ENST00000569950 BHMTQ93088 406 aa9.58□□□□□ -0.88
VPS35-211ENST00000569950 RNF34Q969K3 372 aa9.58□□□□□ -0.88
VPS35-211ENST00000569950 CSPG4P5Q96PW8 444 aa9.58□□□□□ -0.88
VPS35-211ENST00000569950 TLR10Q9BXR5 811 aa9.58□□□□□ -0.88
VPS35-211ENST00000569950 TSGA10Q9BZW7 698 aa9.58□□□□□ -0.88
VPS35-211ENST00000569950 STAU2Q9NUL3 570 aaKnown RBP eCLIP9.58□□□□□ -0.88
VPS35-211ENST00000569950 TRMT1Q9NXH9 659 aaKnown RBP9.58□□□□□ -0.88
VPS35-211ENST00000569950 PPARGC1AQ9UBK2 798 aaKnown RBP9.58□□□□□ -0.88
VPS35-211ENST00000569950 WNT16Q9UBV4 365 aa9.58□□□□□ -0.88
VPS35-211ENST00000569950 LCMT1Q9UIC8 334 aa9.58□□□□□ -0.88
VPS35-211ENST00000569950 TBC1D30Q9Y2I9 924 aa9.58□□□□□ -0.88
VPS35-211ENST00000569950 PCDHA3Q9Y5H8 950 aa9.58□□□□□ -0.88
VPS35-211ENST00000569950 WDR87Q6ZQQ6 2873 aa9.57□□□□□ -0.88
VPS35-211ENST00000569950 PRRT4C9JH25 899 aa9.57□□□□□ -0.88
VPS35-211ENST00000569950 NEDD8-MDP1E9PL57 170 aa9.57□□□□□ -0.88
VPS35-211ENST00000569950 F5H5T6 163 aa9.57□□□□□ -0.88
VPS35-211ENST00000569950 PI4K2BG5E9Z4 385 aa9.57□□□□□ -0.88
VPS35-211ENST00000569950 PSTPIP1O43586 416 aa9.57□□□□□ -0.88
VPS35-211ENST00000569950 KRT86O43790 486 aa9.57□□□□□ -0.88
VPS35-211ENST00000569950 TBL1XO60907 577 aa9.57□□□□□ -0.88
VPS35-211ENST00000569950 LUC7L3O95232 432 aaKnown RBP9.57□□□□□ -0.88
VPS35-211ENST00000569950 ADH1CP00326 375 aa9.57□□□□□ -0.88
VPS35-211ENST00000569950 CD72P21854 359 aa9.57□□□□□ -0.88
VPS35-211ENST00000569950 KDELR1P24390 212 aa9.57□□□□□ -0.88
VPS35-211ENST00000569950 CD70P32970 193 aa9.57□□□□□ -0.88
VPS35-211ENST00000569950 CDKN2BP42772 138 aa9.57□□□□□ -0.88
VPS35-211ENST00000569950 HCAR3P49019 387 aa9.57□□□□□ -0.88
VPS35-211ENST00000569950 STARD6P59095 220 aa9.57□□□□□ -0.88
VPS35-211ENST00000569950 GAD2Q05329 585 aa9.57□□□□□ -0.88
VPS35-211ENST00000569950 MTA1Q13330 715 aa9.57□□□□□ -0.88
VPS35-211ENST00000569950 GEN1Q17RS7 908 aa9.57□□□□□ -0.88
VPS35-211ENST00000569950 HS1BP3Q53T59 392 aa9.57□□□□□ -0.88
VPS35-211ENST00000569950 TMEM196Q5HYL7 178 aa9.57□□□□□ -0.88
VPS35-211ENST00000569950 EFHC2Q5JST6 749 aa9.57□□□□□ -0.88
VPS35-211ENST00000569950 MEI1Q5TIA1 1274 aa9.57□□□□□ -0.88
VPS35-211ENST00000569950 RFX8Q6ZV50 586 aa9.57□□□□□ -0.88
VPS35-211ENST00000569950 CHST9Q7L1S5 443 aa9.57□□□□□ -0.88
VPS35-211ENST00000569950 ADIPOR2Q86V24 386 aa9.57□□□□□ -0.88
VPS35-211ENST00000569950 ARHGAP12Q8IWW6 846 aa9.57□□□□□ -0.88
VPS35-211ENST00000569950 RHOT1Q8IXI2 618 aa9.57□□□□□ -0.88
VPS35-211ENST00000569950 YAF2Q8IY57 180 aa9.57□□□□□ -0.88
VPS35-211ENST00000569950 UBALD2Q8IYN6 164 aa9.57□□□□□ -0.88
VPS35-211ENST00000569950 KATNAL2Q8IYT4 538 aa9.57□□□□□ -0.88
VPS35-211ENST00000569950 CPA6Q8N4T0 437 aa9.57□□□□□ -0.88
VPS35-211ENST00000569950 NAT16Q8N8M0 369 aa9.57□□□□□ -0.88
VPS35-211ENST00000569950 FIBINQ8TAL6 211 aa9.57□□□□□ -0.88
VPS35-211ENST00000569950 HSPH1Q92598 858 aa9.57□□□□□ -0.88
VPS35-211ENST00000569950 VOPP1Q96AW1 172 aa9.57□□□□□ -0.88
Retrieved 100 of 20,778 RNA–protein pairs in 26.1 ms