RNA–Protein interactions for RNA: ENST00000569916.1

CNOT1-220, Transcript of CCR4-NOT transcription complex subunit 1, humanhuman

TSL 3

Gene CNOT1, Length 599 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CNOT1-220ENST00000569916 LMNB2Q03252 620 aa13.47□□□□□ -0.25
CNOT1-220ENST00000569916 DEUP1Q05D60 604 aa13.47□□□□□ -0.25
CNOT1-220ENST00000569916 MTA1Q13330 715 aa13.47□□□□□ -0.25
CNOT1-220ENST00000569916 STARD3Q14849 445 aa13.47□□□□□ -0.25
CNOT1-220ENST00000569916 CSRP2Q16527 193 aa13.47□□□□□ -0.25
CNOT1-220ENST00000569916 CLEC16AQ2KHT3 1053 aa13.47□□□□□ -0.25
CNOT1-220ENST00000569916 ZSCAN23Q3MJ62 389 aa13.47□□□□□ -0.25
CNOT1-220ENST00000569916 SLC25A52Q3SY17 297 aa13.47□□□□□ -0.25
CNOT1-220ENST00000569916 FILIP1LQ4L180 1135 aa13.47□□□□□ -0.25
CNOT1-220ENST00000569916 BRMS1LQ5PSV4 323 aa13.47□□□□□ -0.25
CNOT1-220ENST00000569916 PLA2G2CQ5R387 149 aa13.47□□□□□ -0.25
CNOT1-220ENST00000569916 FBXL22Q6P050 247 aa13.47□□□□□ -0.25
CNOT1-220ENST00000569916 PRR23CQ6ZRP0 262 aa13.47□□□□□ -0.25
CNOT1-220ENST00000569916 CIR1Q86X95 450 aaPredicted RBP13.47□□□□□ -0.25
CNOT1-220ENST00000569916 EMC1Q8N766 993 aa13.47□□□□□ -0.25
CNOT1-220ENST00000569916 CFAP57Q96MR6 1250 aa13.47□□□□□ -0.25
CNOT1-220ENST00000569916 AGPAT1Q99943 283 aa13.47□□□□□ -0.25
CNOT1-220ENST00000569916 MKRN2Q9H000 416 aaKnown RBP13.47□□□□□ -0.25
CNOT1-220ENST00000569916 TMEM245Q9H330 911 aa13.47□□□□□ -0.25
CNOT1-220ENST00000569916 CD93Q9NPY3 652 aa13.47□□□□□ -0.25
CNOT1-220ENST00000569916 ARHGEF38Q9NXL2 777 aa13.47□□□□□ -0.25
CNOT1-220ENST00000569916 MYO6Q9UM54 1294 aa13.47□□□□□ -0.25
CNOT1-220ENST00000569916 HS3ST4Q9Y661 456 aa13.47□□□□□ -0.25
CNOT1-220ENST00000569916 DYNC1LI1Q9Y6G9 523 aaKnown RBP13.47□□□□□ -0.25
CNOT1-220ENST00000569916 IGHV1OR15-9A0A0B4J2B8 117 aa13.46□□□□□ -0.25
CNOT1-220ENST00000569916 A0A1B0GVM2 712 aa13.46□□□□□ -0.25
CNOT1-220ENST00000569916 BCLAF3A2AJT9 711 aaKnown RBP13.46□□□□□ -0.25
CNOT1-220ENST00000569916 TCAF2A6NFQ2 919 aa13.46□□□□□ -0.25
CNOT1-220ENST00000569916 LRRC53A6NM62 1247 aa13.46□□□□□ -0.25
CNOT1-220ENST00000569916 H0Y626 953 aa13.46□□□□□ -0.25
CNOT1-220ENST00000569916 ZBTB24O43167 697 aaPredicted RBP13.46□□□□□ -0.25
CNOT1-220ENST00000569916 SYNCRIPO60506 623 aaKnown RBP13.46□□□□□ -0.25
CNOT1-220ENST00000569916 ATP5BP06576 529 aaKnown RBP13.46□□□□□ -0.25
CNOT1-220ENST00000569916 EPHX1P07099 455 aa13.46□□□□□ -0.25
CNOT1-220ENST00000569916 FERP16591 822 aa13.46□□□□□ -0.25
CNOT1-220ENST00000569916 POLR2EP19388 210 aaKnown RBP13.46□□□□□ -0.25
CNOT1-220ENST00000569916 NSFP46459 744 aaKnown RBP13.46□□□□□ -0.25
CNOT1-220ENST00000569916 IRAK1P51617 712 aa13.46□□□□□ -0.25
CNOT1-220ENST00000569916 COPAP53621 1224 aa13.46□□□□□ -0.25
CNOT1-220ENST00000569916 BYSLQ13895 437 aaKnown RBP13.46□□□□□ -0.25
CNOT1-220ENST00000569916 NR1I3Q14994 352 aa13.46□□□□□ -0.25
CNOT1-220ENST00000569916 CCDC6Q16204 474 aa13.46□□□□□ -0.25
CNOT1-220ENST00000569916 FNDC3BQ53EP0 1204 aaKnown RBP13.46□□□□□ -0.25
CNOT1-220ENST00000569916 PITRM1Q5JRX3 1037 aa13.46□□□□□ -0.25
CNOT1-220ENST00000569916 RABGAP1LQ5R372 815 aa13.46□□□□□ -0.25
CNOT1-220ENST00000569916 TTC39BQ5VTQ0 682 aaPredicted RBP13.46□□□□□ -0.25
CNOT1-220ENST00000569916 KIAA1324Q6UXG2 1013 aaKnown RBP13.46□□□□□ -0.25
CNOT1-220ENST00000569916 MON1BQ7L1V2 547 aa13.46□□□□□ -0.25
CNOT1-220ENST00000569916 PHF13Q86YI8 300 aaPredicted RBP13.46□□□□□ -0.25
CNOT1-220ENST00000569916 CCDC117Q8IWD4 279 aaPredicted RBP13.46□□□□□ -0.25
CNOT1-220ENST00000569916 CCAR2Q8N163 923 aaKnown RBP13.46□□□□□ -0.25
CNOT1-220ENST00000569916 ZNF366Q8N895 744 aa13.46□□□□□ -0.25
CNOT1-220ENST00000569916 IGSF8Q969P0 613 aa13.46□□□□□ -0.25
CNOT1-220ENST00000569916 TTC17Q96AE7 1141 aa13.46□□□□□ -0.25
CNOT1-220ENST00000569916 RMDN1Q96DB5 314 aa13.46□□□□□ -0.25
CNOT1-220ENST00000569916 MYO19Q96H55 970 aa13.46□□□□□ -0.25
CNOT1-220ENST00000569916 SYT11Q9BT88 431 aa13.46□□□□□ -0.25
CNOT1-220ENST00000569916 TTYH3Q9C0H2 523 aa13.46□□□□□ -0.25
CNOT1-220ENST00000569916 TKTL2Q9H0I9 626 aa13.46□□□□□ -0.25
CNOT1-220ENST00000569916 WDCPQ9H6R7 721 aa13.46□□□□□ -0.25
CNOT1-220ENST00000569916 VANGL2Q9ULK5 521 aa13.46□□□□□ -0.25
CNOT1-220ENST00000569916 PLA2G4CQ9UP65 541 aa13.46□□□□□ -0.25
CNOT1-220ENST00000569916 ZNF217O75362 1048 aa13.45□□□□□ -0.26
CNOT1-220ENST00000569916 GJB6O95452 261 aa13.45□□□□□ -0.26
CNOT1-220ENST00000569916 F9P00740 461 aa13.45□□□□□ -0.26
CNOT1-220ENST00000569916 SERPINC1P01008 464 aa13.45□□□□□ -0.26
CNOT1-220ENST00000569916 ASLP04424 464 aa13.45□□□□□ -0.26
CNOT1-220ENST00000569916 ZNF806P0C7X5 589 aa13.45□□□□□ -0.26
CNOT1-220ENST00000569916 CSKP41240 450 aa13.45□□□□□ -0.26
CNOT1-220ENST00000569916 DHPSP49366 369 aaPredicted RBP13.45□□□□□ -0.26
CNOT1-220ENST00000569916 CREB5Q02930 508 aa13.45□□□□□ -0.26
CNOT1-220ENST00000569916 CAMK2GQ13555 558 aaPredicted RBP13.45□□□□□ -0.26
CNOT1-220ENST00000569916 AUHQ13825 339 aaKnown RBP13.45□□□□□ -0.26
CNOT1-220ENST00000569916 SF3A2Q15428 464 aaKnown RBP13.45□□□□□ -0.26
CNOT1-220ENST00000569916 SKOR2Q2VWA4 1001 aaPredicted RBP13.45□□□□□ -0.26
CNOT1-220ENST00000569916 PLEKHG6Q3KR16 790 aa13.45□□□□□ -0.26
CNOT1-220ENST00000569916 C5orf22Q49AR2 442 aa13.45□□□□□ -0.26
CNOT1-220ENST00000569916 E4F1Q66K89 784 aaPredicted RBP13.45□□□□□ -0.26
CNOT1-220ENST00000569916 CXorf57Q6NSI4 855 aaKnown RBP13.45□□□□□ -0.26
CNOT1-220ENST00000569916 SND1Q7KZF4 910 aaKnown RBP eCLIP13.45□□□□□ -0.26
CNOT1-220ENST00000569916 LPCAT2Q7L5N7 544 aa13.45□□□□□ -0.26
CNOT1-220ENST00000569916 IRF2BP2Q7Z5L9 587 aa13.45□□□□□ -0.26
CNOT1-220ENST00000569916 PHLDB2Q86SQ0 1253 aa13.45□□□□□ -0.26
CNOT1-220ENST00000569916 C14orf80Q86SX3 495 aa13.45□□□□□ -0.26
CNOT1-220ENST00000569916 APCDD1Q8J025 514 aa13.45□□□□□ -0.26
CNOT1-220ENST00000569916 JOSD2Q8TAC2 188 aa13.45□□□□□ -0.26
CNOT1-220ENST00000569916 MRGPRX3Q96LB0 322 aa13.45□□□□□ -0.26
CNOT1-220ENST00000569916 RPRD1AQ96P16 312 aaPredicted RBP13.45□□□□□ -0.26
CNOT1-220ENST00000569916 SIK2Q9H0K1 926 aa13.45□□□□□ -0.26
CNOT1-220ENST00000569916 SMOC1Q9H4F8 434 aa13.45□□□□□ -0.26
CNOT1-220ENST00000569916 TMPRSS4Q9NRS4 437 aa13.45□□□□□ -0.26
CNOT1-220ENST00000569916 SEPT11Q9NVA2 429 aaKnown RBP13.45□□□□□ -0.26
CNOT1-220ENST00000569916 ADAM22Q9P0K1 906 aa13.45□□□□□ -0.26
CNOT1-220ENST00000569916 KIAA1522Q9P206 1035 aaPredicted RBP13.45□□□□□ -0.26
CNOT1-220ENST00000569916 USP36Q9P275 1121 aaKnown RBP13.45□□□□□ -0.26
CNOT1-220ENST00000569916 CYP8B1Q9UNU6 501 aa13.45□□□□□ -0.26
CNOT1-220ENST00000569916 SDK1Q7Z5N4 2213 aa13.45□□□□□ -0.26
CNOT1-220ENST00000569916 SPTBN4Q9H254 2564 aa13.45□□□□□ -0.26
CNOT1-220ENST00000569916 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa13.44□□□□□ -0.26
CNOT1-220ENST00000569916 TCRBV5S1A1TA0A578 114 aa13.44□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 28.8 ms