RNA–Protein interactions for RNA: ENST00000568497.6

CLN3-235, Transcript of CLN3, battenin, humanhuman

TSL 3

Gene CLN3, Length 758 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-235ENST00000568497 ATXN7O15265 892 aaPredicted RBP14.44□□□□□ -0.1
CLN3-235ENST00000568497 MOCS2O96007 188 aaPredicted RBP14.44□□□□□ -0.1
CLN3-235ENST00000568497 PLEKP08567 350 aaPredicted RBP14.44□□□□□ -0.1
CLN3-235ENST00000568497 HNRNPLP14866 589 aaKnown RBP eCLIP14.44□□□□□ -0.1
CLN3-235ENST00000568497 OPRD1P41143 372 aa14.44□□□□□ -0.1
CLN3-235ENST00000568497 TPM4P67936 248 aa14.44□□□□□ -0.1
CLN3-235ENST00000568497 CDR2Q01850 454 aa14.44□□□□□ -0.1
CLN3-235ENST00000568497 OLFML1Q6UWY5 402 aa14.44□□□□□ -0.1
CLN3-235ENST00000568497 TXNDC5Q8NBS9 432 aaKnown RBP14.44□□□□□ -0.1
CLN3-235ENST00000568497 TTYH3Q9C0H2 523 aa14.44□□□□□ -0.1
CLN3-235ENST00000568497 TMPRSS4Q9NRS4 437 aa14.44□□□□□ -0.1
CLN3-235ENST00000568497 DNAAF2Q9NVR5 837 aaKnown RBP14.44□□□□□ -0.1
CLN3-235ENST00000568497 AGO1Q9UL18 857 aaKnown RBP14.44□□□□□ -0.1
CLN3-235ENST00000568497 PLXND1Q9Y4D7 1925 aa14.44□□□□□ -0.1
CLN3-235ENST00000568497 A0A087WV48 116 aa14.43□□□□□ -0.1
CLN3-235ENST00000568497 TCRBV21S2A2A0A5A6 115 aa14.43□□□□□ -0.1
CLN3-235ENST00000568497 J3QKU1 62 aa14.43□□□□□ -0.1
CLN3-235ENST00000568497 KLF8O95600 359 aaPredicted RBP14.43□□□□□ -0.1
CLN3-235ENST00000568497 TIE1P35590 1138 aa14.43□□□□□ -0.1
CLN3-235ENST00000568497 ZNF445P59923 1031 aa14.43□□□□□ -0.1
CLN3-235ENST00000568497 MRPS21P82921 87 aaKnown RBP14.43□□□□□ -0.1
CLN3-235ENST00000568497 SLC14A1Q13336 389 aa14.43□□□□□ -0.1
CLN3-235ENST00000568497 ASIC2Q16515 512 aa14.43□□□□□ -0.1
CLN3-235ENST00000568497 MAP7D1Q3KQU3 841 aa14.43□□□□□ -0.1
CLN3-235ENST00000568497 DCAF6Q58WW2 860 aa14.43□□□□□ -0.1
CLN3-235ENST00000568497 EMC10Q5UCC4 262 aa14.43□□□□□ -0.1
CLN3-235ENST00000568497 OTUD1Q5VV17 481 aaPredicted RBP14.43□□□□□ -0.1
CLN3-235ENST00000568497 RFWD3Q6PCD5 774 aa14.43□□□□□ -0.1
CLN3-235ENST00000568497 Q6ZNB5 142 aa14.43□□□□□ -0.1
CLN3-235ENST00000568497 IRF2BP2Q7Z5L9 587 aa14.43□□□□□ -0.1
CLN3-235ENST00000568497 SLCO6A1Q86UG4 719 aa14.43□□□□□ -0.1
CLN3-235ENST00000568497 XYLT1Q86Y38 959 aa14.43□□□□□ -0.1
CLN3-235ENST00000568497 ARHGAP18Q8N392 663 aa14.43□□□□□ -0.1
CLN3-235ENST00000568497 EMC1Q8N766 993 aa14.43□□□□□ -0.1
CLN3-235ENST00000568497 TMEM35BQ8NCS4 154 aa14.43□□□□□ -0.1
CLN3-235ENST00000568497 AGPAT1Q99943 283 aa14.43□□□□□ -0.1
CLN3-235ENST00000568497 LHX5Q9H2C1 402 aa14.43□□□□□ -0.1
CLN3-235ENST00000568497 E2F8A0AVK6 867 aa14.42□□□□□ -0.1
CLN3-235ENST00000568497 NEDD8-MDP1E9PL57 170 aa14.42□□□□□ -0.1
CLN3-235ENST00000568497 SGK1O00141 431 aa14.42□□□□□ -0.1
CLN3-235ENST00000568497 ATMINO43313 823 aaPredicted RBP14.42□□□□□ -0.1
CLN3-235ENST00000568497 FBXO21O94952 628 aa14.42□□□□□ -0.1
CLN3-235ENST00000568497 NFATC1O95644 943 aa14.42□□□□□ -0.1
CLN3-235ENST00000568497 ADH5P11766 374 aa14.42□□□□□ -0.1
CLN3-235ENST00000568497 TCF3P15923 654 aa14.42□□□□□ -0.1
CLN3-235ENST00000568497 ACADSBP45954 432 aa14.42□□□□□ -0.1
CLN3-235ENST00000568497 PSEN1P49768 467 aa14.42□□□□□ -0.1
CLN3-235ENST00000568497 BPIFB4P59827 614 aa14.42□□□□□ -0.1
CLN3-235ENST00000568497 ZNF33AQ06730 810 aa14.42□□□□□ -0.1
CLN3-235ENST00000568497 PLEKHG6Q3KR16 790 aa14.42□□□□□ -0.1
CLN3-235ENST00000568497 HSF5Q4G112 596 aaPredicted RBP14.42□□□□□ -0.1
CLN3-235ENST00000568497 ZC3H12AQ5D1E8 599 aaKnown RBP14.42□□□□□ -0.1
CLN3-235ENST00000568497 NADSYN1Q6IA69 706 aa14.42□□□□□ -0.1
CLN3-235ENST00000568497 ZNF571Q7Z3V5 609 aaPredicted RBP14.42□□□□□ -0.1
CLN3-235ENST00000568497 ERICH1Q86X53 443 aa14.42□□□□□ -0.1
CLN3-235ENST00000568497 MARCH9Q86YJ5 346 aa14.42□□□□□ -0.1
CLN3-235ENST00000568497 RGL4Q8IZJ4 473 aa14.42□□□□□ -0.1
CLN3-235ENST00000568497 JOSD2Q8TAC2 188 aa14.42□□□□□ -0.1
CLN3-235ENST00000568497 SETD7Q8WTS6 366 aaKnown RBP14.42□□□□□ -0.1
CLN3-235ENST00000568497 METTL5Q9NRN9 209 aaKnown RBP14.42□□□□□ -0.1
CLN3-235ENST00000568497 ABCC13Q9NSE7 274 aa14.42□□□□□ -0.1
CLN3-235ENST00000568497 STRIP2Q9ULQ0 834 aa14.42□□□□□ -0.1
CLN3-235ENST00000568497 GOLGA4Q13439 2230 aaKnown RBP14.41□□□□□ -0.1
CLN3-235ENST00000568497 ZNF462Q96JM2 2506 aa14.41□□□□□ -0.1
CLN3-235ENST00000568497 A0A1W2PQC6 194 aa14.41□□□□□ -0.1
CLN3-235ENST00000568497 TRABD2BA6NFA1 517 aa14.41□□□□□ -0.1
CLN3-235ENST00000568497 GOLGA8CPA6NN73 597 aa14.41□□□□□ -0.1
CLN3-235ENST00000568497 CAPN9O14815 690 aa14.41□□□□□ -0.1
CLN3-235ENST00000568497 CYP1A1P04798 512 aaPredicted RBP14.41□□□□□ -0.1
CLN3-235ENST00000568497 GYPCP04921 128 aa14.41□□□□□ -0.1
CLN3-235ENST00000568497 PFKLP17858 780 aa14.41□□□□□ -0.1
CLN3-235ENST00000568497 SLC6A4P31645 630 aa14.41□□□□□ -0.1
CLN3-235ENST00000568497 CDH5P33151 784 aaPredicted RBP14.41□□□□□ -0.1
CLN3-235ENST00000568497 FLT3P36888 993 aa14.41□□□□□ -0.1
CLN3-235ENST00000568497 TBX4P57082 545 aa14.41□□□□□ -0.1
CLN3-235ENST00000568497 SLC6A3Q01959 620 aa14.41□□□□□ -0.1
CLN3-235ENST00000568497 PTP4A2Q12974 167 aa14.41□□□□□ -0.1
CLN3-235ENST00000568497 NME3Q13232 169 aa14.41□□□□□ -0.1
CLN3-235ENST00000568497 TRIP4Q15650 581 aaPredicted RBP14.41□□□□□ -0.1
CLN3-235ENST00000568497 CLEC16AQ2KHT3 1053 aa14.41□□□□□ -0.1
CLN3-235ENST00000568497 EOGTQ5NDL2 527 aa14.41□□□□□ -0.1
CLN3-235ENST00000568497 FAM102AQ5T9C2 384 aaPredicted RBP14.41□□□□□ -0.1
CLN3-235ENST00000568497 HTR3DQ70Z44 454 aa14.41□□□□□ -0.1
CLN3-235ENST00000568497 CIR1Q86X95 450 aaPredicted RBP14.41□□□□□ -0.1
CLN3-235ENST00000568497 ZNF843Q8N446 348 aa14.41□□□□□ -0.1
CLN3-235ENST00000568497 IL17RCQ8NAC3 791 aa14.41□□□□□ -0.1
CLN3-235ENST00000568497 STK32AQ8WU08 396 aa14.41□□□□□ -0.1
CLN3-235ENST00000568497 IRGQQ8WZA9 623 aa14.41□□□□□ -0.1
CLN3-235ENST00000568497 FCRL2Q96LA5 508 aaPredicted RBP14.41□□□□□ -0.1
CLN3-235ENST00000568497 MAGEB5Q9BZ81 275 aa14.41□□□□□ -0.1
CLN3-235ENST00000568497 HAUS4Q9H6D7 363 aa14.41□□□□□ -0.1
CLN3-235ENST00000568497 FAM204AQ9H8W3 233 aa14.41□□□□□ -0.1
CLN3-235ENST00000568497 ANLNQ9NQW6 1124 aa14.41□□□□□ -0.1
CLN3-235ENST00000568497 MYO18AQ92614 2054 aaKnown RBP14.41□□□□□ -0.1
CLN3-235ENST00000568497 GJB3O75712 270 aa14.4□□□□□ -0.1
CLN3-235ENST00000568497 TRUB2O95900 331 aaKnown RBP14.4□□□□□ -0.1
CLN3-235ENST00000568497 UNGP13051 313 aaPredicted RBP14.4□□□□□ -0.1
CLN3-235ENST00000568497 WASP42768 502 aa14.4□□□□□ -0.1
CLN3-235ENST00000568497 IRAK1P51617 712 aa14.4□□□□□ -0.1
CLN3-235ENST00000568497 YWHAZP63104 245 aaKnown RBP14.4□□□□□ -0.1
Retrieved 100 of 20,778 RNA–protein pairs in 12.9 ms