RNA–Protein interactions for RNA: ENST00000567250.5

SF3B3-208, Transcript of splicing factor 3b subunit 3, humanhuman

TSL 3

Gene SF3B3, Length 1,084 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B3-208ENST00000567250 TRIM7Q9C029 511 aa12.56□□□□□ -0.4
SF3B3-208ENST00000567250 ZYG11BQ9C0D3 744 aa12.56□□□□□ -0.4
SF3B3-208ENST00000567250 CHRDQ9H2X0 955 aa12.56□□□□□ -0.4
SF3B3-208ENST00000567250 RETREG1Q9H6L5 497 aa12.56□□□□□ -0.4
SF3B3-208ENST00000567250 OSGEPQ9NPF4 335 aa12.56□□□□□ -0.4
SF3B3-208ENST00000567250 C11orf16Q9NQ32 467 aa12.56□□□□□ -0.4
SF3B3-208ENST00000567250 DONSONQ9NYP3 566 aa12.56□□□□□ -0.4
SF3B3-208ENST00000567250 STIM2Q9P246 746 aa12.56□□□□□ -0.4
SF3B3-208ENST00000567250 PPARGC1AQ9UBK2 798 aaKnown RBP12.56□□□□□ -0.4
SF3B3-208ENST00000567250 OR12D3Q9UGF7 316 aa12.56□□□□□ -0.4
SF3B3-208ENST00000567250 FBXO10Q9UK96 956 aa12.56□□□□□ -0.4
SF3B3-208ENST00000567250 FZD10Q9ULW2 581 aa12.56□□□□□ -0.4
SF3B3-208ENST00000567250 USP18Q9UMW8 372 aa12.56□□□□□ -0.4
SF3B3-208ENST00000567250 AP4E1Q9UPM8 1137 aa12.56□□□□□ -0.4
SF3B3-208ENST00000567250 NYNRINQ9P2P1 1898 aaKnown RBP12.55□□□□□ -0.4
SF3B3-208ENST00000567250 IGLV3-10A0A075B6K4 115 aa12.55□□□□□ -0.4
SF3B3-208ENST00000567250 TBC1D3BA6NDS4 549 aa12.55□□□□□ -0.4
SF3B3-208ENST00000567250 ATG13O75143 517 aa12.55□□□□□ -0.4
SF3B3-208ENST00000567250 PROSCO94903 275 aa12.55□□□□□ -0.4
SF3B3-208ENST00000567250 PTMAP06454 111 aaKnown RBP12.55□□□□□ -0.4
SF3B3-208ENST00000567250 CHRNB1P11230 501 aa12.55□□□□□ -0.4
SF3B3-208ENST00000567250 PABPC1P11940 636 aaKnown RBP12.55□□□□□ -0.4
SF3B3-208ENST00000567250 MIPP30301 263 aa12.55□□□□□ -0.4
SF3B3-208ENST00000567250 GGCXP38435 758 aa12.55□□□□□ -0.4
SF3B3-208ENST00000567250 SSR1P43307 286 aaKnown RBP12.55□□□□□ -0.4
SF3B3-208ENST00000567250 TNFRSF4P43489 277 aa12.55□□□□□ -0.4
SF3B3-208ENST00000567250 NOP2P46087 812 aaKnown RBP12.55□□□□□ -0.4
SF3B3-208ENST00000567250 SLC6A11P48066 632 aa12.55□□□□□ -0.4
SF3B3-208ENST00000567250 SGSHP51688 502 aa12.55□□□□□ -0.4
SF3B3-208ENST00000567250 HADHBP55084 474 aaKnown RBP12.55□□□□□ -0.4
SF3B3-208ENST00000567250 SLC12A1Q13621 1099 aa12.55□□□□□ -0.4
SF3B3-208ENST00000567250 IFI16Q16666 785 aaKnown RBP12.55□□□□□ -0.4
SF3B3-208ENST00000567250 HSF5Q4G112 596 aaPredicted RBP12.55□□□□□ -0.4
SF3B3-208ENST00000567250 ERMARDQ5T6L9 678 aa12.55□□□□□ -0.4
SF3B3-208ENST00000567250 LRRC8AQ8IWT6 810 aa12.55□□□□□ -0.4
SF3B3-208ENST00000567250 CCAR2Q8N163 923 aaKnown RBP12.55□□□□□ -0.4
SF3B3-208ENST00000567250 PHTF2Q8N3S3 785 aa12.55□□□□□ -0.4
SF3B3-208ENST00000567250 DDX51Q8N8A6 666 aaKnown RBP eCLIP12.55□□□□□ -0.4
SF3B3-208ENST00000567250 FIBINQ8TAL6 211 aa12.55□□□□□ -0.4
SF3B3-208ENST00000567250 KCNV2Q8TDN2 545 aa12.55□□□□□ -0.4
SF3B3-208ENST00000567250 CLDN23Q96B33 292 aa12.55□□□□□ -0.4
SF3B3-208ENST00000567250 TBC1D31Q96DN5 1066 aa12.55□□□□□ -0.4
SF3B3-208ENST00000567250 SNRNP25Q9BV90 132 aaKnown RBP12.55□□□□□ -0.4
SF3B3-208ENST00000567250 LMAN1LQ9HAT1 526 aa12.55□□□□□ -0.4
SF3B3-208ENST00000567250 ANLNQ9NQW6 1124 aa12.55□□□□□ -0.4
SF3B3-208ENST00000567250 GGA2Q9UJY4 613 aa12.55□□□□□ -0.4
SF3B3-208ENST00000567250 MUC22E2RYF6 1773 aaPredicted RBP12.55□□□□□ -0.4
SF3B3-208ENST00000567250 A0A0A0MRY4 1105 aa12.54□□□□□ -0.4
SF3B3-208ENST00000567250 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP12.54□□□□□ -0.4
SF3B3-208ENST00000567250 BTNL10A8MVZ5 291 aa12.54□□□□□ -0.4
SF3B3-208ENST00000567250 I6L893 689 aaPredicted RBP12.54□□□□□ -0.4
SF3B3-208ENST00000567250 NPC1O15118 1278 aa12.54□□□□□ -0.4
SF3B3-208ENST00000567250 FGF10O15520 208 aaPredicted RBP12.54□□□□□ -0.4
SF3B3-208ENST00000567250 SRGAP2O75044 1071 aa12.54□□□□□ -0.4
SF3B3-208ENST00000567250 RNF40O75150 1001 aa12.54□□□□□ -0.4
SF3B3-208ENST00000567250 EGFP01133 1207 aa12.54□□□□□ -0.4
SF3B3-208ENST00000567250 KRT7P08729 469 aa12.54□□□□□ -0.4
SF3B3-208ENST00000567250 L1CAMP32004 1257 aa12.54□□□□□ -0.4
SF3B3-208ENST00000567250 SLC1A1P43005 524 aa12.54□□□□□ -0.4
SF3B3-208ENST00000567250 TPI1P60174 286 aa12.54□□□□□ -0.4
SF3B3-208ENST00000567250 MRPS21P82921 87 aaKnown RBP12.54□□□□□ -0.4
SF3B3-208ENST00000567250 KIF5AQ12840 1032 aa12.54□□□□□ -0.4
SF3B3-208ENST00000567250 ZNF177Q13360 481 aaPredicted RBP12.54□□□□□ -0.4
SF3B3-208ENST00000567250 DMC1Q14565 340 aa12.54□□□□□ -0.4
SF3B3-208ENST00000567250 RAB6CQ53S08 254 aa12.54□□□□□ -0.4
SF3B3-208ENST00000567250 BOLA3Q53S33 107 aa12.54□□□□□ -0.4
SF3B3-208ENST00000567250 C6orf118Q5T5N4 469 aa12.54□□□□□ -0.4
SF3B3-208ENST00000567250 MANEALQ5VSG8 457 aa12.54□□□□□ -0.4
SF3B3-208ENST00000567250 NAIF1Q69YI7 327 aaPredicted RBP12.54□□□□□ -0.4
SF3B3-208ENST00000567250 RWDD4Q6NW29 188 aaKnown RBP12.54□□□□□ -0.4
SF3B3-208ENST00000567250 SETD3Q86TU7 594 aaPredicted RBP12.54□□□□□ -0.4
SF3B3-208ENST00000567250 ZNF687Q8N1G0 1237 aa12.54□□□□□ -0.4
SF3B3-208ENST00000567250 CFAP52Q8N1V2 620 aa12.54□□□□□ -0.4
SF3B3-208ENST00000567250 ACRBPQ8NEB7 543 aa12.54□□□□□ -0.4
SF3B3-208ENST00000567250 TEKT4Q8WW24 435 aa12.54□□□□□ -0.4
SF3B3-208ENST00000567250 IGSF8Q969P0 613 aa12.54□□□□□ -0.4
SF3B3-208ENST00000567250 BTBD6Q96KE9 485 aa12.54□□□□□ -0.4
SF3B3-208ENST00000567250 TSGA10Q9BZW7 698 aa12.54□□□□□ -0.4
SF3B3-208ENST00000567250 RAB6CQ9H0N0 254 aa12.54□□□□□ -0.4
SF3B3-208ENST00000567250 CATSPERBQ9H7T0 1116 aa12.54□□□□□ -0.4
SF3B3-208ENST00000567250 ZWILCHQ9H900 591 aa12.54□□□□□ -0.4
SF3B3-208ENST00000567250 TMPRSS4Q9NRS4 437 aa12.54□□□□□ -0.4
SF3B3-208ENST00000567250 ABCB8Q9NUT2 735 aa12.54□□□□□ -0.4
SF3B3-208ENST00000567250 KIAA1522Q9P206 1035 aaPredicted RBP12.54□□□□□ -0.4
SF3B3-208ENST00000567250 PCSK1NQ9UHG2 260 aa12.54□□□□□ -0.4
SF3B3-208ENST00000567250 MTF2Q9Y483 593 aaPredicted RBP12.54□□□□□ -0.4
SF3B3-208ENST00000567250 TMEM110-MUSTN1A8MSY1 372 aa12.53□□□□□ -0.4
SF3B3-208ENST00000567250 PJA2O43164 708 aa12.53□□□□□ -0.4
SF3B3-208ENST00000567250 CREB3O43889 395 aa12.53□□□□□ -0.4
SF3B3-208ENST00000567250 LRIG2O94898 1065 aa12.53□□□□□ -0.4
SF3B3-208ENST00000567250 ASLP04424 464 aa12.53□□□□□ -0.4
SF3B3-208ENST00000567250 DCNP07585 359 aaKnown RBP12.53□□□□□ -0.4
SF3B3-208ENST00000567250 RHOCP08134 193 aa12.53□□□□□ -0.4
SF3B3-208ENST00000567250 CCDC175P0C221 793 aa12.53□□□□□ -0.4
SF3B3-208ENST00000567250 CISD3P0C7P0 127 aa12.53□□□□□ -0.4
SF3B3-208ENST00000567250 RHOQP17081 205 aa12.53□□□□□ -0.4
SF3B3-208ENST00000567250 HLA-FP30511 346 aa12.53□□□□□ -0.4
SF3B3-208ENST00000567250 AVPR2P30518 371 aa12.53□□□□□ -0.4
SF3B3-208ENST00000567250 ETFBP38117 255 aa12.53□□□□□ -0.4
SF3B3-208ENST00000567250 ARL4AP40617 200 aa12.53□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 30.8 ms