RNA–Protein interactions for RNA: ENST00000565688.5

CLN3-218, Transcript of CLN3, battenin, humanhuman

TSL 3

Gene CLN3, Length 650 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-218ENST00000565688 CSKP41240 450 aa19.4■□□□□ 0.7
CLN3-218ENST00000565688 RPS24P62847 133 aaKnown RBP19.4■□□□□ 0.7
CLN3-218ENST00000565688 YWHAZP63104 245 aaKnown RBP19.4■□□□□ 0.7
CLN3-218ENST00000565688 ARID5BQ14865 1188 aa19.4■□□□□ 0.7
CLN3-218ENST00000565688 TEAD4Q15561 434 aa19.4■□□□□ 0.7
CLN3-218ENST00000565688 HLA-BQ31612 363 aa19.4■□□□□ 0.7
CLN3-218ENST00000565688 HNRNPA1L2Q32P51 320 aaKnown RBP19.4■□□□□ 0.7
CLN3-218ENST00000565688 SYPL2Q5VXT5 272 aa19.4■□□□□ 0.7
CLN3-218ENST00000565688 SMYD5Q6GMV2 418 aa19.4■□□□□ 0.7
CLN3-218ENST00000565688 USP30Q70CQ3 517 aa19.4■□□□□ 0.7
CLN3-218ENST00000565688 RAB44Q7Z6P3 723 aaPredicted RBP19.4■□□□□ 0.7
CLN3-218ENST00000565688 TMEM110Q86TL2 294 aa19.4■□□□□ 0.7
CLN3-218ENST00000565688 TAC4Q86UU9 113 aa19.4■□□□□ 0.7
CLN3-218ENST00000565688 ADAM32Q8TC27 787 aa19.4■□□□□ 0.7
CLN3-218ENST00000565688 NUCKS1Q9H1E3 243 aaKnown RBP19.4■□□□□ 0.7
CLN3-218ENST00000565688 RSPH9Q9H1X1 276 aaPredicted RBP19.4■□□□□ 0.7
CLN3-218ENST00000565688 THAP9Q9H5L6 903 aa19.4■□□□□ 0.7
CLN3-218ENST00000565688 KLK13Q9UKR3 277 aa19.4■□□□□ 0.7
CLN3-218ENST00000565688 NCKAP1Q9Y2A7 1128 aa19.4■□□□□ 0.7
CLN3-218ENST00000565688 PCDHGB2Q9Y5G2 931 aa19.4■□□□□ 0.7
CLN3-218ENST00000565688 E5RJQ4 531 aa19.39■□□□□ 0.69
CLN3-218ENST00000565688 PAPSS1O43252 624 aaPredicted RBP19.39■□□□□ 0.69
CLN3-218ENST00000565688 THAP12O43422 761 aa19.39■□□□□ 0.69
CLN3-218ENST00000565688 LUC7L3O95232 432 aaKnown RBP19.39■□□□□ 0.69
CLN3-218ENST00000565688 MOCS2O96007 188 aaPredicted RBP19.39■□□□□ 0.69
CLN3-218ENST00000565688 DCAF6Q58WW2 860 aa19.39■□□□□ 0.69
CLN3-218ENST00000565688 CHCHD4Q8N4Q1 142 aa19.39■□□□□ 0.69
CLN3-218ENST00000565688 MYO19Q96H55 970 aa19.39■□□□□ 0.69
CLN3-218ENST00000565688 BTN2A3PQ96KV6 586 aa19.39■□□□□ 0.69
CLN3-218ENST00000565688 TM7SF3Q9NS93 570 aa19.39■□□□□ 0.69
CLN3-218ENST00000565688 KIAA1522Q9P206 1035 aaPredicted RBP19.39■□□□□ 0.69
CLN3-218ENST00000565688 TJP2Q9UDY2 1190 aa19.39■□□□□ 0.69
CLN3-218ENST00000565688 SLC12A6Q9UHW9 1150 aa19.39■□□□□ 0.69
CLN3-218ENST00000565688 RWDD2AQ9UIY3 292 aa19.39■□□□□ 0.69
CLN3-218ENST00000565688 A0A1B0GVT2 93 aa19.38■□□□□ 0.69
CLN3-218ENST00000565688 SRPRAP08240 638 aaKnown RBP19.38■□□□□ 0.69
CLN3-218ENST00000565688 CD27P26842 260 aa19.38■□□□□ 0.69
CLN3-218ENST00000565688 CSNK1EP49674 416 aaKnown RBP19.38■□□□□ 0.69
CLN3-218ENST00000565688 BNC1Q01954 994 aa19.38■□□□□ 0.69
CLN3-218ENST00000565688 PITRM1Q5JRX3 1037 aa19.38■□□□□ 0.69
CLN3-218ENST00000565688 TRIM65Q6PJ69 517 aa19.38■□□□□ 0.69
CLN3-218ENST00000565688 GLRX5Q86SX6 157 aa19.38■□□□□ 0.69
CLN3-218ENST00000565688 LGI2Q8N0V4 545 aa19.38■□□□□ 0.69
CLN3-218ENST00000565688 CFAP52Q8N1V2 620 aa19.38■□□□□ 0.69
CLN3-218ENST00000565688 GANCQ8TET4 914 aa19.38■□□□□ 0.69
CLN3-218ENST00000565688 SETD7Q8WTS6 366 aaKnown RBP19.38■□□□□ 0.69
CLN3-218ENST00000565688 BIRC7Q96CA5 298 aa19.38■□□□□ 0.69
CLN3-218ENST00000565688 MYEOVQ96EZ4 313 aa19.38■□□□□ 0.69
CLN3-218ENST00000565688 PABPC3Q9H361 631 aaKnown RBP19.38■□□□□ 0.69
CLN3-218ENST00000565688 IL21RQ9HBE5 538 aa19.38■□□□□ 0.69
CLN3-218ENST00000565688 TM9SF3Q9HD45 589 aa19.38■□□□□ 0.69
CLN3-218ENST00000565688 SLTMQ9NWH9 1034 aaKnown RBP eCLIP19.38■□□□□ 0.69
CLN3-218ENST00000565688 APEX2Q9UBZ4 518 aa19.38■□□□□ 0.69
CLN3-218ENST00000565688 PCOLCE2Q9UKZ9 415 aa19.38■□□□□ 0.69
CLN3-218ENST00000565688 INTS6Q9UL03 887 aaKnown RBP19.38■□□□□ 0.69
CLN3-218ENST00000565688 APOBEC2Q9Y235 224 aaKnown RBP19.38■□□□□ 0.69
CLN3-218ENST00000565688 DMXL2Q8TDJ6 3036 aa19.38■□□□□ 0.69
CLN3-218ENST00000565688 TARSL2A2RTX5 802 aaKnown RBP19.37■□□□□ 0.69
CLN3-218ENST00000565688 FLRT2O43155 660 aa19.37■□□□□ 0.69
CLN3-218ENST00000565688 CBFA2T3O75081 653 aa19.37■□□□□ 0.69
CLN3-218ENST00000565688 FSBPO95073 299 aa19.37■□□□□ 0.69
CLN3-218ENST00000565688 TRUB2O95900 331 aaKnown RBP19.37■□□□□ 0.69
CLN3-218ENST00000565688 IGLV3-25P01717 112 aa19.37■□□□□ 0.69
CLN3-218ENST00000565688 FTH1P19P0C7X4 201 aa19.37■□□□□ 0.69
CLN3-218ENST00000565688 SLC2A3P11169 496 aa19.37■□□□□ 0.69
CLN3-218ENST00000565688 GRIA4P48058 902 aa19.37■□□□□ 0.69
CLN3-218ENST00000565688 ECT2LQ008S8 904 aa19.37■□□□□ 0.69
CLN3-218ENST00000565688 PDCLQ13371 301 aa19.37■□□□□ 0.69
CLN3-218ENST00000565688 SUZ12Q15022 739 aaKnown RBP19.37■□□□□ 0.69
CLN3-218ENST00000565688 ZC3H12AQ5D1E8 599 aaKnown RBP19.37■□□□□ 0.69
CLN3-218ENST00000565688 FSCBQ5H9T9 825 aa19.37■□□□□ 0.69
CLN3-218ENST00000565688 RNF219Q5W0B1 726 aaPredicted RBP19.37■□□□□ 0.69
CLN3-218ENST00000565688 GBP6Q6ZN66 633 aa19.37■□□□□ 0.69
CLN3-218ENST00000565688 CHSY1Q86X52 802 aa19.37■□□□□ 0.69
CLN3-218ENST00000565688 ATP6V0D2Q8N8Y2 350 aa19.37■□□□□ 0.69
CLN3-218ENST00000565688 ADAMTS14Q8WXS8 1223 aa19.37■□□□□ 0.69
CLN3-218ENST00000565688 ZCCHC14Q8WYQ9 949 aaKnown RBP19.37■□□□□ 0.69
CLN3-218ENST00000565688 MRGPRX3Q96LB0 322 aa19.37■□□□□ 0.69
CLN3-218ENST00000565688 CRACR2AQ9BSW2 395 aa19.37■□□□□ 0.69
CLN3-218ENST00000565688 KIAA1468Q9P260 1216 aa19.37■□□□□ 0.69
CLN3-218ENST00000565688 CYTH4Q9UIA0 394 aa19.37■□□□□ 0.69
CLN3-218ENST00000565688 ERVW-1Q9UQF0 538 aa19.37■□□□□ 0.69
CLN3-218ENST00000565688 FNDC3AQ9Y2H6 1198 aaKnown RBP19.37■□□□□ 0.69
CLN3-218ENST00000565688 CEP83Q9Y592 693 aa19.37■□□□□ 0.69
CLN3-218ENST00000565688 DSPP15924 2871 aaKnown RBP19.37■□□□□ 0.69
CLN3-218ENST00000565688 FAM208BQ5VWN6 2430 aa19.36■□□□□ 0.69
CLN3-218ENST00000565688 SPEGQ15772 3267 aa19.36■□□□□ 0.69
CLN3-218ENST00000565688 EDDM13A0A1B0GTR0 161 aa19.36■□□□□ 0.69
CLN3-218ENST00000565688 GTPBP10A4D1E9 387 aaKnown RBP19.36■□□□□ 0.69
CLN3-218ENST00000565688 F5H5T6 163 aa19.36■□□□□ 0.69
CLN3-218ENST00000565688 SIN3BO75182 1162 aa19.36■□□□□ 0.69
CLN3-218ENST00000565688 GLI1P08151 1106 aa19.36■□□□□ 0.69
CLN3-218ENST00000565688 TACR2P21452 398 aa19.36■□□□□ 0.69
CLN3-218ENST00000565688 USP8P40818 1118 aa19.36■□□□□ 0.69
CLN3-218ENST00000565688 CDK17Q00537 523 aa19.36■□□□□ 0.69
CLN3-218ENST00000565688 MTA1Q13330 715 aa19.36■□□□□ 0.69
CLN3-218ENST00000565688 SLC12A1Q13621 1099 aa19.36■□□□□ 0.69
CLN3-218ENST00000565688 KIF19Q2TAC6 998 aa19.36■□□□□ 0.69
CLN3-218ENST00000565688 TTC39BQ5VTQ0 682 aaPredicted RBP19.36■□□□□ 0.69
CLN3-218ENST00000565688 RAP1GAP2Q684P5 730 aa19.36■□□□□ 0.69
Retrieved 100 of 20,778 RNA–protein pairs in 23.7 ms