RNA–Protein interactions for RNA: ENST00000563842.5

CLK3-213, Transcript of CDC like kinase 3, humanhuman

TSL 5

Gene CLK3, Length 860 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-213ENST00000563842 OLIG1Q8TAK6 271 aa13.84□□□□□ -0.19
CLK3-213ENST00000563842 PCDHB18PQ96TA0 734 aa13.84□□□□□ -0.19
CLK3-213ENST00000563842 TBCBQ99426 244 aa13.84□□□□□ -0.19
CLK3-213ENST00000563842 PRMT1Q99873 361 aaKnown RBP13.84□□□□□ -0.19
CLK3-213ENST00000563842 SELENOOQ9BVL4 669 aa13.84□□□□□ -0.19
CLK3-213ENST00000563842 TKTL2Q9H0I9 626 aa13.84□□□□□ -0.19
CLK3-213ENST00000563842 METTL5Q9NRN9 209 aaKnown RBP13.84□□□□□ -0.19
CLK3-213ENST00000563842 PIGVQ9NUD9 493 aa13.84□□□□□ -0.19
CLK3-213ENST00000563842 ARHGEF38Q9NXL2 777 aa13.84□□□□□ -0.19
CLK3-213ENST00000563842 XPO7Q9UIA9 1087 aaKnown RBP13.84□□□□□ -0.19
CLK3-213ENST00000563842 MAP3K13O43283 966 aa13.83□□□□□ -0.2
CLK3-213ENST00000563842 PAGE1O75459 146 aa13.83□□□□□ -0.2
CLK3-213ENST00000563842 PDGFRAP16234 1089 aa13.83□□□□□ -0.2
CLK3-213ENST00000563842 GABRG2P18507 467 aa13.83□□□□□ -0.2
CLK3-213ENST00000563842 CD70P32970 193 aa13.83□□□□□ -0.2
CLK3-213ENST00000563842 FLT3P36888 993 aa13.83□□□□□ -0.2
CLK3-213ENST00000563842 P2RY2P41231 377 aa13.83□□□□□ -0.2
CLK3-213ENST00000563842 IL12RB1P42701 662 aa13.83□□□□□ -0.2
CLK3-213ENST00000563842 ST8SIA6P61647 398 aa13.83□□□□□ -0.2
CLK3-213ENST00000563842 AUHQ13825 339 aaKnown RBP13.83□□□□□ -0.2
CLK3-213ENST00000563842 ARL13BQ3SXY8 428 aa13.83□□□□□ -0.2
CLK3-213ENST00000563842 PLK5Q496M5 336 aa13.83□□□□□ -0.2
CLK3-213ENST00000563842 FNDC3BQ53EP0 1204 aaKnown RBP13.83□□□□□ -0.2
CLK3-213ENST00000563842 TMEM215Q68D42 235 aa13.83□□□□□ -0.2
CLK3-213ENST00000563842 FBXL22Q6P050 247 aa13.83□□□□□ -0.2
CLK3-213ENST00000563842 LRSAM1Q6UWE0 723 aa13.83□□□□□ -0.2
CLK3-213ENST00000563842 LRRC31Q6UY01 552 aa13.83□□□□□ -0.2
CLK3-213ENST00000563842 SLC36A4Q6YBV0 504 aa13.83□□□□□ -0.2
CLK3-213ENST00000563842 ADIPOR2Q86V24 386 aa13.83□□□□□ -0.2
CLK3-213ENST00000563842 KBTBD6Q86V97 674 aa13.83□□□□□ -0.2
CLK3-213ENST00000563842 C3orf20Q8ND61 904 aa13.83□□□□□ -0.2
CLK3-213ENST00000563842 TTC17Q96AE7 1141 aa13.83□□□□□ -0.2
CLK3-213ENST00000563842 VCPIP1Q96JH7 1222 aa13.83□□□□□ -0.2
CLK3-213ENST00000563842 C1orf74Q96LT6 269 aa13.83□□□□□ -0.2
CLK3-213ENST00000563842 RPRD1AQ96P16 312 aaPredicted RBP13.83□□□□□ -0.2
CLK3-213ENST00000563842 SIK2Q9H0K1 926 aa13.83□□□□□ -0.2
CLK3-213ENST00000563842 TSPY26PQ9H489 355 aa13.83□□□□□ -0.2
CLK3-213ENST00000563842 FBRSQ9HAH7 460 aa13.83□□□□□ -0.2
CLK3-213ENST00000563842 SUN2Q9UH99 717 aa13.83□□□□□ -0.2
CLK3-213ENST00000563842 PCDHGA5Q9Y5G8 931 aa13.83□□□□□ -0.2
CLK3-213ENST00000563842 HS3ST4Q9Y661 456 aa13.83□□□□□ -0.2
CLK3-213ENST00000563842 WDR87Q6ZQQ6 2873 aa13.82□□□□□ -0.2
CLK3-213ENST00000563842 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP13.82□□□□□ -0.2
CLK3-213ENST00000563842 A0A1W2PQJ5 194 aa13.82□□□□□ -0.2
CLK3-213ENST00000563842 FAM170AA1A519 330 aa13.82□□□□□ -0.2
CLK3-213ENST00000563842 SIGLEC16A6NMB1 481 aa13.82□□□□□ -0.2
CLK3-213ENST00000563842 WASH3PC4AMC7 463 aa13.82□□□□□ -0.2
CLK3-213ENST00000563842 CBFA2T2O43439 604 aa13.82□□□□□ -0.2
CLK3-213ENST00000563842 CLDN11O75508 207 aa13.82□□□□□ -0.2
CLK3-213ENST00000563842 ENDOD1O94919 500 aa13.82□□□□□ -0.2
CLK3-213ENST00000563842 EPN2O95208 641 aa13.82□□□□□ -0.2
CLK3-213ENST00000563842 EPHX1P07099 455 aa13.82□□□□□ -0.2
CLK3-213ENST00000563842 NNMTP40261 264 aa13.82□□□□□ -0.2
CLK3-213ENST00000563842 PRKCIP41743 596 aa13.82□□□□□ -0.2
CLK3-213ENST00000563842 PTPN9P43378 593 aa13.82□□□□□ -0.2
CLK3-213ENST00000563842 SULT2A1Q06520 285 aa13.82□□□□□ -0.2
CLK3-213ENST00000563842 KLHL30Q0D2K2 578 aa13.82□□□□□ -0.2
CLK3-213ENST00000563842 LMAN2Q12907 356 aa13.82□□□□□ -0.2
CLK3-213ENST00000563842 PTP4A2Q12974 167 aa13.82□□□□□ -0.2
CLK3-213ENST00000563842 ZNF177Q13360 481 aaPredicted RBP13.82□□□□□ -0.2
CLK3-213ENST00000563842 SPDYCQ5MJ68 293 aa13.82□□□□□ -0.2
CLK3-213ENST00000563842 OTUD1Q5VV17 481 aaPredicted RBP13.82□□□□□ -0.2
CLK3-213ENST00000563842 KIAA1211LQ6NV74 962 aa13.82□□□□□ -0.2
CLK3-213ENST00000563842 DNAJC24Q6P3W2 148 aa13.82□□□□□ -0.2
CLK3-213ENST00000563842 MON1BQ7L1V2 547 aa13.82□□□□□ -0.2
CLK3-213ENST00000563842 STRADAQ7RTN6 431 aa13.82□□□□□ -0.2
CLK3-213ENST00000563842 CCAR2Q8N163 923 aaKnown RBP13.82□□□□□ -0.2
CLK3-213ENST00000563842 DCLK2Q8N568 766 aa13.82□□□□□ -0.2
CLK3-213ENST00000563842 KDM1BQ8NB78 822 aa13.82□□□□□ -0.2
CLK3-213ENST00000563842 WFDC5Q8TCV5 224 aa13.82□□□□□ -0.2
CLK3-213ENST00000563842 RXFP2Q8WXD0 754 aa13.82□□□□□ -0.2
CLK3-213ENST00000563842 SORCS1Q8WY21 1168 aa13.82□□□□□ -0.2
CLK3-213ENST00000563842 MYEOVQ96EZ4 313 aa13.82□□□□□ -0.2
CLK3-213ENST00000563842 LMLNQ96KR4 655 aa13.82□□□□□ -0.2
CLK3-213ENST00000563842 CFAP57Q96MR6 1250 aa13.82□□□□□ -0.2
CLK3-213ENST00000563842 HAPLN3Q96S86 360 aa13.82□□□□□ -0.2
CLK3-213ENST00000563842 TTYH3Q9C0H2 523 aa13.82□□□□□ -0.2
CLK3-213ENST00000563842 DUSP15Q9H1R2 295 aaPredicted RBP13.82□□□□□ -0.2
CLK3-213ENST00000563842 VANGL2Q9ULK5 521 aa13.82□□□□□ -0.2
CLK3-213ENST00000563842 RAD54BQ9Y620 910 aa13.82□□□□□ -0.2
CLK3-213ENST00000563842 BZW2Q9Y6E2 419 aaKnown RBP13.82□□□□□ -0.2
CLK3-213ENST00000563842 MUC22E2RYF6 1773 aaPredicted RBP13.81□□□□□ -0.2
CLK3-213ENST00000563842 C2CD4BA6NLJ0 364 aa13.81□□□□□ -0.2
CLK3-213ENST00000563842 ADCY5O95622 1261 aa13.81□□□□□ -0.2
CLK3-213ENST00000563842 SRPRAP08240 638 aaKnown RBP13.81□□□□□ -0.2
CLK3-213ENST00000563842 GZMAP12544 262 aa13.81□□□□□ -0.2
CLK3-213ENST00000563842 NDUFV2P19404 249 aa13.81□□□□□ -0.2
CLK3-213ENST00000563842 TFE3P19532 575 aaPredicted RBP13.81□□□□□ -0.2
CLK3-213ENST00000563842 GPD1P21695 349 aa13.81□□□□□ -0.2
CLK3-213ENST00000563842 PBX1P40424 430 aa13.81□□□□□ -0.2
CLK3-213ENST00000563842 CSKP41240 450 aa13.81□□□□□ -0.2
CLK3-213ENST00000563842 CDH4P55283 916 aa13.81□□□□□ -0.2
CLK3-213ENST00000563842 ATP11AP98196 1134 aa13.81□□□□□ -0.2
CLK3-213ENST00000563842 NFKBIBQ15653 356 aa13.81□□□□□ -0.2
CLK3-213ENST00000563842 FUT11Q495W5 492 aa13.81□□□□□ -0.2
CLK3-213ENST00000563842 C5orf22Q49AR2 442 aa13.81□□□□□ -0.2
CLK3-213ENST00000563842 PITRM1Q5JRX3 1037 aa13.81□□□□□ -0.2
CLK3-213ENST00000563842 RNF219Q5W0B1 726 aaPredicted RBP13.81□□□□□ -0.2
CLK3-213ENST00000563842 PMS2CLQ68D20 193 aa13.81□□□□□ -0.2
CLK3-213ENST00000563842 LPCAT2Q7L5N7 544 aa13.81□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 36 ms