RNA–Protein interactions for RNA: ENST00000560637.5

VPS13C-209, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 1 (best)

Gene VPS13C, Length 3,684 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-209ENST00000560637 LINC01465Q8N7H1 131 aa5.6□□□□□ -1.51
VPS13C-209ENST00000560637 VCPIP1Q96JH7 1222 aa5.6□□□□□ -1.51
VPS13C-209ENST00000560637 FICDQ9BVA6 458 aa5.6□□□□□ -1.51
VPS13C-209ENST00000560637 BCO2Q9BYV7 579 aa5.6□□□□□ -1.51
VPS13C-209ENST00000560637 FAM114A2Q9NRY5 505 aa5.6□□□□□ -1.51
VPS13C-209ENST00000560637 HOMER3Q9NSC5 361 aa5.6□□□□□ -1.51
VPS13C-209ENST00000560637 IGSF5Q9NSI5 407 aa5.6□□□□□ -1.51
VPS13C-209ENST00000560637 THG1LQ9NWX6 298 aaKnown RBP5.6□□□□□ -1.51
VPS13C-209ENST00000560637 GDAP2Q9NXN4 497 aa5.6□□□□□ -1.51
VPS13C-209ENST00000560637 PSTPIP1O43586 416 aa5.59□□□□□ -1.51
VPS13C-209ENST00000560637 OPA1O60313 960 aa5.59□□□□□ -1.51
VPS13C-209ENST00000560637 SEC24AO95486 1093 aa5.59□□□□□ -1.51
VPS13C-209ENST00000560637 CYP1A2P05177 515 aa5.59□□□□□ -1.51
VPS13C-209ENST00000560637 GLI1P08151 1106 aa5.59□□□□□ -1.51
VPS13C-209ENST00000560637 HOXD8P13378 290 aaPredicted RBP5.59□□□□□ -1.51
VPS13C-209ENST00000560637 PECAM1P16284 738 aaPredicted RBP5.59□□□□□ -1.51
VPS13C-209ENST00000560637 PBLDP30039 288 aaPredicted RBP5.59□□□□□ -1.51
VPS13C-209ENST00000560637 RFC2P35250 354 aa5.59□□□□□ -1.51
VPS13C-209ENST00000560637 UBXN2BQ14CS0 331 aa5.59□□□□□ -1.51
VPS13C-209ENST00000560637 ZRANB3Q5FWF4 1079 aa5.59□□□□□ -1.51
VPS13C-209ENST00000560637 HHATQ5VTY9 493 aa5.59□□□□□ -1.51
VPS13C-209ENST00000560637 KIAA0319Q5VV43 1072 aa5.59□□□□□ -1.51
VPS13C-209ENST00000560637 ITPRIPL1Q6GPH6 555 aa5.59□□□□□ -1.51
VPS13C-209ENST00000560637 RFX8Q6ZV50 586 aa5.59□□□□□ -1.51
VPS13C-209ENST00000560637 WDTC1Q8N5D0 677 aa5.59□□□□□ -1.51
VPS13C-209ENST00000560637 EXD1Q8NHP7 514 aa5.59□□□□□ -1.51
VPS13C-209ENST00000560637 ZSCAN18Q8TBC5 510 aaPredicted RBP5.59□□□□□ -1.51
VPS13C-209ENST00000560637 BCL7CQ8WUZ0 217 aaPredicted RBP5.59□□□□□ -1.51
VPS13C-209ENST00000560637 SLC35F5Q8WV83 523 aa5.59□□□□□ -1.51
VPS13C-209ENST00000560637 CDKL2Q92772 493 aa5.59□□□□□ -1.51
VPS13C-209ENST00000560637 KHSRPQ92945 711 aaKnown RBP eCLIP5.59□□□□□ -1.512e-7■■■■□ 21.5
VPS13C-209ENST00000560637 GPR88Q9GZN0 384 aa5.59□□□□□ -1.51
VPS13C-209ENST00000560637 ZNF576Q9H609 170 aa5.59□□□□□ -1.51
VPS13C-209ENST00000560637 PCDH18Q9HCL0 1135 aa5.59□□□□□ -1.51
VPS13C-209ENST00000560637 BPIFA1Q9NP55 256 aa5.59□□□□□ -1.51
VPS13C-209ENST00000560637 AVENQ9NQS1 362 aaPredicted RBP5.59□□□□□ -1.51
VPS13C-209ENST00000560637 ETNK2Q9NVF9 386 aa5.59□□□□□ -1.51
VPS13C-209ENST00000560637 IL1RAPL1Q9NZN1 696 aa5.59□□□□□ -1.51
VPS13C-209ENST00000560637 RNF14Q9UBS8 474 aa5.59□□□□□ -1.51
VPS13C-209ENST00000560637 NOVA2Q9UNW9 492 aaKnown RBP5.59□□□□□ -1.51
VPS13C-209ENST00000560637 NEU2Q9Y3R4 380 aa5.59□□□□□ -1.51
VPS13C-209ENST00000560637 ZFP37Q9Y6Q3 630 aaPredicted RBP5.59□□□□□ -1.51
VPS13C-209ENST00000560637 C2CD4BA6NLJ0 364 aa5.59□□□□□ -1.51
VPS13C-209ENST00000560637 TADA3O75528 432 aa5.59□□□□□ -1.51
VPS13C-209ENST00000560637 CRCPO75575 148 aa5.59□□□□□ -1.51
VPS13C-209ENST00000560637 CYP1A1P04798 512 aaPredicted RBP5.59□□□□□ -1.51
VPS13C-209ENST00000560637 IVLP07476 585 aa5.59□□□□□ -1.51
VPS13C-209ENST00000560637 F7P08709 466 aaPredicted RBP5.59□□□□□ -1.51
VPS13C-209ENST00000560637 CDC25CP30307 473 aa5.59□□□□□ -1.51
VPS13C-209ENST00000560637 HNRNPH3P31942 346 aaKnown RBP5.59□□□□□ -1.51
VPS13C-209ENST00000560637 PHBP35232 272 aa5.59□□□□□ -1.51
VPS13C-209ENST00000560637 PLA2G4AP47712 749 aa5.59□□□□□ -1.51
VPS13C-209ENST00000560637 ZBTB16Q05516 673 aa5.59□□□□□ -1.51
VPS13C-209ENST00000560637 AUHQ13825 339 aaKnown RBP5.59□□□□□ -1.51
VPS13C-209ENST00000560637 ARHGEF7Q14155 803 aa5.59□□□□□ -1.51
VPS13C-209ENST00000560637 LONRF1Q17RB8 773 aa5.59□□□□□ -1.51
VPS13C-209ENST00000560637 ANKRD20A8PQ5CZ79 823 aa5.59□□□□□ -1.51
VPS13C-209ENST00000560637 RNF187Q5TA31 235 aaPredicted RBP5.59□□□□□ -1.51
VPS13C-209ENST00000560637 RSPO2Q6UXX9 243 aaPredicted RBP5.59□□□□□ -1.51
VPS13C-209ENST00000560637 MARK2Q7KZI7 788 aaKnown RBP5.59□□□□□ -1.51
VPS13C-209ENST00000560637 SLC26A9Q7LBE3 791 aa5.59□□□□□ -1.51
VPS13C-209ENST00000560637 SLC39A11Q8N1S5 342 aa5.59□□□□□ -1.51
VPS13C-209ENST00000560637 CYB5D2Q8WUJ1 264 aa5.59□□□□□ -1.51
VPS13C-209ENST00000560637 SGF29Q96ES7 293 aa5.59□□□□□ -1.51
VPS13C-209ENST00000560637 PNKPQ96T60 521 aa5.59□□□□□ -1.51
VPS13C-209ENST00000560637 CLSTN3Q9BQT9 956 aa5.59□□□□□ -1.51
VPS13C-209ENST00000560637 CFHR5Q9BXR6 569 aa5.59□□□□□ -1.51
VPS13C-209ENST00000560637 SEZ6LQ9BYH1 1024 aa5.59□□□□□ -1.51
VPS13C-209ENST00000560637 LHX5Q9H2C1 402 aa5.59□□□□□ -1.51
VPS13C-209ENST00000560637 ADAM7Q9H2U9 754 aa5.59□□□□□ -1.51
VPS13C-209ENST00000560637 SLC25A13Q9UJS0 675 aa5.59□□□□□ -1.51
VPS13C-209ENST00000560637 PCDHA3Q9Y5H8 950 aa5.59□□□□□ -1.51
VPS13C-209ENST00000560637 DOCK5Q9H7D0 1870 aa5.59□□□□□ -1.51
VPS13C-209ENST00000560637 MFSD11O43934 449 aa5.59□□□□□ -1.52
VPS13C-209ENST00000560637 LZTS3O60299 673 aaPredicted RBP5.59□□□□□ -1.52
VPS13C-209ENST00000560637 SNAP91O60641 907 aa5.59□□□□□ -1.52
VPS13C-209ENST00000560637 SPAG7O75391 227 aa5.59□□□□□ -1.52
VPS13C-209ENST00000560637 CNTN5O94779 1100 aa5.59□□□□□ -1.52
VPS13C-209ENST00000560637 CHRM1P11229 460 aaPredicted RBP5.59□□□□□ -1.52
VPS13C-209ENST00000560637 POLR2EP19388 210 aaKnown RBP5.59□□□□□ -1.52
VPS13C-209ENST00000560637 PSMB4P28070 264 aa5.59□□□□□ -1.52
VPS13C-209ENST00000560637 CXCR3P49682 368 aa5.59□□□□□ -1.52
VPS13C-209ENST00000560637 SLC12A1Q13621 1099 aa5.59□□□□□ -1.52
VPS13C-209ENST00000560637 KRT33BQ14525 404 aa5.59□□□□□ -1.52
VPS13C-209ENST00000560637 DSC3Q14574 896 aa5.59□□□□□ -1.52
VPS13C-209ENST00000560637 LRRC14Q15048 493 aa5.59□□□□□ -1.52
VPS13C-209ENST00000560637 TCTN1Q2MV58 587 aa5.59□□□□□ -1.52
VPS13C-209ENST00000560637 TRIM71Q2Q1W2 868 aaKnown RBP5.59□□□□□ -1.52
VPS13C-209ENST00000560637 TCEAL5Q5H9L2 206 aa5.59□□□□□ -1.52
VPS13C-209ENST00000560637 RASIP1Q5U651 963 aa5.59□□□□□ -1.52
VPS13C-209ENST00000560637 PLEKHA7Q6IQ23 1121 aa5.59□□□□□ -1.52
VPS13C-209ENST00000560637 C11orf63Q6NUN7 778 aa5.59□□□□□ -1.52
VPS13C-209ENST00000560637 DOK6Q6PKX4 331 aa5.59□□□□□ -1.52
VPS13C-209ENST00000560637 C15orf39Q6ZRI6 1047 aa5.59□□□□□ -1.52
VPS13C-209ENST00000560637 TTC7BQ86TV6 843 aa5.59□□□□□ -1.52
VPS13C-209ENST00000560637 ZDHHC17Q8IUH5 632 aa5.59□□□□□ -1.52
VPS13C-209ENST00000560637 PPP4R1Q8TF05 950 aa5.59□□□□□ -1.52
VPS13C-209ENST00000560637 SORCS1Q8WY21 1168 aa5.59□□□□□ -1.52
VPS13C-209ENST00000560637 KLK6Q92876 244 aa5.59□□□□□ -1.52
VPS13C-209ENST00000560637 SNF8Q96H20 258 aa5.59□□□□□ -1.52
Retrieved 100 of 20,778 RNA–protein pairs in 23 ms