RNA–Protein interactions for RNA: ENST00000560207.1

RABGGTA-215, Transcript of Rab geranylgeranyltransferase subunit alpha, humanhuman

TSL 3

Gene RABGGTA, Length 678 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RABGGTA-215ENST00000560207 PDLIM2Q96JY6 352 aa12.44□□□□□ -0.42
RABGGTA-215ENST00000560207 EPHX3Q9H6B9 360 aa12.44□□□□□ -0.42
RABGGTA-215ENST00000560207 RCOR3Q9P2K3 495 aaPredicted RBP12.44□□□□□ -0.42
RABGGTA-215ENST00000560207 FZD10Q9ULW2 581 aa12.44□□□□□ -0.42
RABGGTA-215ENST00000560207 SBDSQ9Y3A5 250 aaKnown RBP eCLIP12.44□□□□□ -0.42
RABGGTA-215ENST00000560207 COL4A3Q01955 1670 aa12.44□□□□□ -0.42
RABGGTA-215ENST00000560207 TBC1D3BA6NDS4 549 aa12.43□□□□□ -0.42
RABGGTA-215ENST00000560207 CHURC1-FNTBB4DL54 471 aa12.43□□□□□ -0.42
RABGGTA-215ENST00000560207 E9PAM4 449 aa12.43□□□□□ -0.42
RABGGTA-215ENST00000560207 GJB6O95452 261 aa12.43□□□□□ -0.42
RABGGTA-215ENST00000560207 ASLP04424 464 aa12.43□□□□□ -0.42
RABGGTA-215ENST00000560207 ATP5BP06576 529 aaKnown RBP12.43□□□□□ -0.42
RABGGTA-215ENST00000560207 CCDC175P0C221 793 aa12.43□□□□□ -0.42
RABGGTA-215ENST00000560207 RHOQP17081 205 aa12.43□□□□□ -0.42
RABGGTA-215ENST00000560207 TFE3P19532 575 aaPredicted RBP12.43□□□□□ -0.42
RABGGTA-215ENST00000560207 MIPP30301 263 aa12.43□□□□□ -0.42
RABGGTA-215ENST00000560207 MAPKAPK2P49137 400 aa12.43□□□□□ -0.42
RABGGTA-215ENST00000560207 OGDHQ02218 1023 aa12.43□□□□□ -0.42
RABGGTA-215ENST00000560207 CCDC173Q0VFZ6 552 aa12.43□□□□□ -0.42
RABGGTA-215ENST00000560207 PON2Q15165 354 aa12.43□□□□□ -0.42
RABGGTA-215ENST00000560207 GAB4Q2WGN9 574 aa12.43□□□□□ -0.42
RABGGTA-215ENST00000560207 SDE2Q6IQ49 451 aa12.43□□□□□ -0.42
RABGGTA-215ENST00000560207 C11orf63Q6NUN7 778 aa12.43□□□□□ -0.42
RABGGTA-215ENST00000560207 RFWD3Q6PCD5 774 aa12.43□□□□□ -0.42
RABGGTA-215ENST00000560207 RAD9BQ6WBX8 426 aa12.43□□□□□ -0.42
RABGGTA-215ENST00000560207 SYCE1Q8N0S2 351 aa12.43□□□□□ -0.42
RABGGTA-215ENST00000560207 KDM1BQ8NB78 822 aa12.43□□□□□ -0.42
RABGGTA-215ENST00000560207 TBC1D31Q96DN5 1066 aa12.43□□□□□ -0.42
RABGGTA-215ENST00000560207 ARHGEF26Q96DR7 871 aa12.43□□□□□ -0.42
RABGGTA-215ENST00000560207 PACSIN1Q9BY11 444 aa12.43□□□□□ -0.42
RABGGTA-215ENST00000560207 IRF2BPLQ9H1B7 796 aa12.43□□□□□ -0.42
RABGGTA-215ENST00000560207 KCNH6Q9H252 994 aa12.43□□□□□ -0.42
RABGGTA-215ENST00000560207 ZWILCHQ9H900 591 aa12.43□□□□□ -0.42
RABGGTA-215ENST00000560207 CALCOCO1Q9P1Z2 691 aa12.43□□□□□ -0.42
RABGGTA-215ENST00000560207 VANGL2Q9ULK5 521 aa12.43□□□□□ -0.42
RABGGTA-215ENST00000560207 AP4E1Q9UPM8 1137 aa12.43□□□□□ -0.42
RABGGTA-215ENST00000560207 TBC1D30Q9Y2I9 924 aa12.43□□□□□ -0.42
RABGGTA-215ENST00000560207 A0A0C4DFX4 3053 aa12.43□□□□□ -0.42
RABGGTA-215ENST00000560207 GOLGA6L7A0A1B0GV03 622 aa12.42□□□□□ -0.42
RABGGTA-215ENST00000560207 ZNF487B1APH4 448 aa12.42□□□□□ -0.42
RABGGTA-215ENST00000560207 SCAMP3O14828 347 aaKnown RBP12.42□□□□□ -0.42
RABGGTA-215ENST00000560207 TSPAN3O60637 253 aa12.42□□□□□ -0.42
RABGGTA-215ENST00000560207 CISD3P0C7P0 127 aa12.42□□□□□ -0.42
RABGGTA-215ENST00000560207 CHRNB1P11230 501 aa12.42□□□□□ -0.42
RABGGTA-215ENST00000560207 TARSP26639 723 aaKnown RBP12.42□□□□□ -0.42
RABGGTA-215ENST00000560207 NNMTP40261 264 aa12.42□□□□□ -0.42
RABGGTA-215ENST00000560207 ARL4AP40617 200 aa12.42□□□□□ -0.42
RABGGTA-215ENST00000560207 SOX9P48436 509 aa12.42□□□□□ -0.42
RABGGTA-215ENST00000560207 VASPP50552 380 aaPredicted RBP12.42□□□□□ -0.42
RABGGTA-215ENST00000560207 PLK1P53350 603 aa12.42□□□□□ -0.42
RABGGTA-215ENST00000560207 YBEYP58557 167 aaPredicted RBP12.42□□□□□ -0.42
RABGGTA-215ENST00000560207 ZNF252P-AS1Q0IIN9 211 aa12.42□□□□□ -0.42
RABGGTA-215ENST00000560207 PDK2Q15119 407 aa12.42□□□□□ -0.42
RABGGTA-215ENST00000560207 DPYSL2Q16555 572 aa12.42□□□□□ -0.42
RABGGTA-215ENST00000560207 ODF2Q5BJF6 829 aa12.42□□□□□ -0.42
RABGGTA-215ENST00000560207 SH3PXD2AQ5TCZ1 1133 aa12.42□□□□□ -0.42
RABGGTA-215ENST00000560207 KIAA0907Q7Z7F0 614 aaPredicted RBP12.42□□□□□ -0.42
RABGGTA-215ENST00000560207 CCDC105Q8IYK2 499 aa12.42□□□□□ -0.42
RABGGTA-215ENST00000560207 CCAR2Q8N163 923 aaKnown RBP12.42□□□□□ -0.42
RABGGTA-215ENST00000560207 SPEM1Q8N4L4 309 aa12.42□□□□□ -0.42
RABGGTA-215ENST00000560207 LZTR1Q8N653 840 aa12.42□□□□□ -0.42
RABGGTA-215ENST00000560207 TTC8Q8TAM2 541 aa12.42□□□□□ -0.42
RABGGTA-215ENST00000560207 ADAM33Q9BZ11 813 aa12.42□□□□□ -0.42
RABGGTA-215ENST00000560207 CHRDQ9H2X0 955 aa12.42□□□□□ -0.42
RABGGTA-215ENST00000560207 LMAN1LQ9HAT1 526 aa12.42□□□□□ -0.42
RABGGTA-215ENST00000560207 DDX56Q9NY93 547 aaKnown RBP12.42□□□□□ -0.42
RABGGTA-215ENST00000560207 NDRG2Q9UN36 371 aaKnown RBP12.42□□□□□ -0.42
RABGGTA-215ENST00000560207 PLA2G4CQ9UP65 541 aa12.42□□□□□ -0.42
RABGGTA-215ENST00000560207 KMT2EQ8IZD2 1858 aa12.42□□□□□ -0.42
RABGGTA-215ENST00000560207 FAM170AA1A519 330 aa12.41□□□□□ -0.42
RABGGTA-215ENST00000560207 ILVBLA1L0T0 632 aa12.41□□□□□ -0.42
RABGGTA-215ENST00000560207 WASH4PA8MWX3 477 aa12.41□□□□□ -0.42
RABGGTA-215ENST00000560207 H3BRJ5 948 aa12.41□□□□□ -0.42
RABGGTA-215ENST00000560207 ZBTB24O43167 697 aaPredicted RBP12.41□□□□□ -0.42
RABGGTA-215ENST00000560207 SRGAP2O75044 1071 aa12.41□□□□□ -0.42
RABGGTA-215ENST00000560207 PABPC1P11940 636 aaKnown RBP12.41□□□□□ -0.42
RABGGTA-215ENST00000560207 HNRNPLP14866 589 aaKnown RBP eCLIP12.41□□□□□ -0.42
RABGGTA-215ENST00000560207 POLR2EP19388 210 aaKnown RBP12.41□□□□□ -0.42
RABGGTA-215ENST00000560207 HOXC13P31276 330 aa12.41□□□□□ -0.42
RABGGTA-215ENST00000560207 CCR3P51677 355 aa12.41□□□□□ -0.42
RABGGTA-215ENST00000560207 ATXN1P54253 815 aaKnown RBP12.41□□□□□ -0.42
RABGGTA-215ENST00000560207 VCPP55072 806 aaKnown RBP12.41□□□□□ -0.42
RABGGTA-215ENST00000560207 NAP1L1P55209 391 aaKnown RBP12.41□□□□□ -0.42
RABGGTA-215ENST00000560207 GEMIN4P57678 1058 aaKnown RBP12.41□□□□□ -0.42
RABGGTA-215ENST00000560207 RPS24P62847 133 aaKnown RBP12.41□□□□□ -0.42
RABGGTA-215ENST00000560207 SEMA3BQ13214 749 aa12.41□□□□□ -0.42
RABGGTA-215ENST00000560207 MESDQ14696 234 aa12.41□□□□□ -0.42
RABGGTA-215ENST00000560207 EOGTQ5NDL2 527 aa12.41□□□□□ -0.42
RABGGTA-215ENST00000560207 MANEALQ5VSG8 457 aa12.41□□□□□ -0.42
RABGGTA-215ENST00000560207 FSTL4Q6MZW2 842 aa12.41□□□□□ -0.42
RABGGTA-215ENST00000560207 TXNDC11Q6PKC3 985 aa12.41□□□□□ -0.42
RABGGTA-215ENST00000560207 METTL3Q86U44 580 aaKnown RBP12.41□□□□□ -0.42
RABGGTA-215ENST00000560207 RHOT1Q8IXI2 618 aa12.41□□□□□ -0.42
RABGGTA-215ENST00000560207 ZNF687Q8N1G0 1237 aa12.41□□□□□ -0.42
RABGGTA-215ENST00000560207 PHTF2Q8N3S3 785 aa12.41□□□□□ -0.42
RABGGTA-215ENST00000560207 CARNMT1Q8N4J0 409 aa12.41□□□□□ -0.42
RABGGTA-215ENST00000560207 CCDC185Q8N715 623 aa12.41□□□□□ -0.42
RABGGTA-215ENST00000560207 NAT16Q8N8M0 369 aa12.41□□□□□ -0.42
RABGGTA-215ENST00000560207 CHFRQ96EP1 664 aa12.41□□□□□ -0.42
RABGGTA-215ENST00000560207 PRICKLE1Q96MT3 831 aaPredicted RBP12.41□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 57.8 ms