RNA–Protein interactions for RNA: ENST00000559844.5

SNX1-208, Transcript of sorting nexin 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SNX1, Length 1,971 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-208ENST00000559844 PKMYT1Q99640 499 aa18.34■□□□□ 0.53
SNX1-208ENST00000559844 FERMT1Q9BQL6 677 aa18.34■□□□□ 0.53
SNX1-208ENST00000559844 ETNK2Q9NVF9 386 aa18.34■□□□□ 0.53
SNX1-208ENST00000559844 TMLHEQ9NVH6 421 aa18.34■□□□□ 0.53
SNX1-208ENST00000559844 MTCL1Q9Y4B5 1905 aaKnown RBP18.34■□□□□ 0.53
SNX1-208ENST00000559844 SZT2Q5T011 3432 aa18.34■□□□□ 0.53
SNX1-208ENST00000559844 WDR27A2RRH5 827 aa18.33■□□□□ 0.53
SNX1-208ENST00000559844 FYNP06241 537 aa18.33■□□□□ 0.53
SNX1-208ENST00000559844 USP17L7P0C7H9 530 aa18.33■□□□□ 0.53
SNX1-208ENST00000559844 CACNA2D1P54289 1103 aa18.33■□□□□ 0.53
SNX1-208ENST00000559844 PITX1P78337 314 aaPredicted RBP18.33■□□□□ 0.53
SNX1-208ENST00000559844 GAD2Q05329 585 aa18.33■□□□□ 0.53
SNX1-208ENST00000559844 SCAPQ12770 1279 aa18.33■□□□□ 0.53
SNX1-208ENST00000559844 BBS9Q3SYG4 887 aa18.33■□□□□ 0.53
SNX1-208ENST00000559844 HP1BP3Q5SSJ5 553 aaPredicted RBP18.33■□□□□ 0.53
SNX1-208ENST00000559844 PYROXD2Q8N2H3 581 aa18.33■□□□□ 0.53
SNX1-208ENST00000559844 FBXO36Q8NEA4 188 aa18.33■□□□□ 0.53
SNX1-208ENST00000559844 ATXN2LQ8WWM7 1075 aaKnown RBP18.33■□□□□ 0.53
SNX1-208ENST00000559844 CCDC134Q9H6E4 229 aa18.33■□□□□ 0.53
SNX1-208ENST00000559844 ARHGEF4Q9NR80 690 aa18.33■□□□□ 0.53
SNX1-208ENST00000559844 SYNJ2BP-COX16A0A087WUM0 186 aa18.33■□□□□ 0.52
SNX1-208ENST00000559844 C5orf60A6NFR6 353 aa18.33■□□□□ 0.52
SNX1-208ENST00000559844 SPAG6O75602 509 aa18.33■□□□□ 0.52
SNX1-208ENST00000559844 NCAM1P13591 858 aa18.33■□□□□ 0.52
SNX1-208ENST00000559844 ZNF135P52742 658 aaPredicted RBP18.33■□□□□ 0.52
SNX1-208ENST00000559844 GPX6P59796 221 aa18.33■□□□□ 0.52
SNX1-208ENST00000559844 SLC10A2Q12908 348 aaPredicted RBP18.33■□□□□ 0.52
SNX1-208ENST00000559844 GPR17Q13304 367 aa18.33■□□□□ 0.52
SNX1-208ENST00000559844 TMED2Q15363 201 aa18.33■□□□□ 0.52
SNX1-208ENST00000559844 ARL13BQ3SXY8 428 aa18.33■□□□□ 0.52
SNX1-208ENST00000559844 MSS51Q4VC12 460 aa18.33■□□□□ 0.52
SNX1-208ENST00000559844 HEATR6Q6AI08 1181 aaKnown RBP18.33■□□□□ 0.52
SNX1-208ENST00000559844 PM20D1Q6GTS8 502 aa18.33■□□□□ 0.52
SNX1-208ENST00000559844 RNF19BQ6ZMZ0 732 aa18.33■□□□□ 0.52
SNX1-208ENST00000559844 ADGRD2Q7Z7M1 963 aa18.33■□□□□ 0.52
SNX1-208ENST00000559844 TFB1MQ8WVM0 346 aaKnown RBP18.33■□□□□ 0.52
SNX1-208ENST00000559844 OLFM3Q96PB7 478 aa18.33■□□□□ 0.52
SNX1-208ENST00000559844 PIGVQ9NUD9 493 aa18.33■□□□□ 0.52
SNX1-208ENST00000559844 DTLQ9NZJ0 730 aa18.33■□□□□ 0.52
SNX1-208ENST00000559844 COX16Q9P0S2 106 aa18.33■□□□□ 0.52
SNX1-208ENST00000559844 SENP1Q9P0U3 644 aa18.33■□□□□ 0.52
SNX1-208ENST00000559844 CLUHO75153 1309 aa18.33■□□□□ 0.52
SNX1-208ENST00000559844 POC1B-GALNT4F8VUJ3 575 aa18.32■□□□□ 0.52
SNX1-208ENST00000559844 EEF2KO00418 725 aaKnown RBP18.32■□□□□ 0.52
SNX1-208ENST00000559844 BRAFP15056 766 aa18.32■□□□□ 0.52
SNX1-208ENST00000559844 BDNFP23560 247 aa18.32■□□□□ 0.52
SNX1-208ENST00000559844 ADRA1BP35368 520 aa18.32■□□□□ 0.52
SNX1-208ENST00000559844 NRLP54845 237 aa18.32■□□□□ 0.52
SNX1-208ENST00000559844 GEMIN4P57678 1058 aaKnown RBP18.32■□□□□ 0.52
SNX1-208ENST00000559844 RAB33AQ14088 237 aa18.32■□□□□ 0.52
SNX1-208ENST00000559844 C4orf50Q6ZRC1 276 aa18.32■□□□□ 0.52
SNX1-208ENST00000559844 MICALCLQ6ZW33 695 aa18.32■□□□□ 0.52
SNX1-208ENST00000559844 RBM23Q86U06 439 aaKnown RBP18.32■□□□□ 0.52
SNX1-208ENST00000559844 CYP4X1Q8N118 509 aa18.32■□□□□ 0.52
SNX1-208ENST00000559844 MCUQ8NE86 351 aa18.32■□□□□ 0.52
SNX1-208ENST00000559844 MAML1Q92585 1016 aa18.32■□□□□ 0.52
SNX1-208ENST00000559844 CHMP6Q96FZ7 201 aa18.32■□□□□ 0.52
SNX1-208ENST00000559844 MAGEB5Q9BZ81 275 aa18.32■□□□□ 0.52
SNX1-208ENST00000559844 FAM107BQ9H098 131 aa18.32■□□□□ 0.52
SNX1-208ENST00000559844 TMEM30AQ9NV96 361 aa18.32■□□□□ 0.52
SNX1-208ENST00000559844 PSMC3IPQ9P2W1 217 aaPredicted RBP18.32■□□□□ 0.52
SNX1-208ENST00000559844 TBK1Q9UHD2 729 aa18.32■□□□□ 0.52
SNX1-208ENST00000559844 TMEM120BA0PK00 339 aa18.31■□□□□ 0.52
SNX1-208ENST00000559844 PER2O15055 1255 aa18.31■□□□□ 0.52
SNX1-208ENST00000559844 BANF1O75531 89 aa18.31■□□□□ 0.52
SNX1-208ENST00000559844 GCAP28676 217 aa18.31■□□□□ 0.52
SNX1-208ENST00000559844 PAFAH1B3Q15102 231 aaKnown RBP18.31■□□□□ 0.52
SNX1-208ENST00000559844 NFE2Q16621 373 aaPredicted RBP18.31■□□□□ 0.52
SNX1-208ENST00000559844 VSTM1Q6UX27 236 aa18.31■□□□□ 0.52
SNX1-208ENST00000559844 C3orf62Q6ZUJ4 267 aa18.31■□□□□ 0.52
SNX1-208ENST00000559844 PDZD4Q76G19 769 aaPredicted RBP18.31■□□□□ 0.52
SNX1-208ENST00000559844 BEND5Q7L4P6 421 aa18.31■□□□□ 0.52
SNX1-208ENST00000559844 SPATA2LQ8IUW3 424 aaPredicted RBP18.31■□□□□ 0.52
SNX1-208ENST00000559844 ZNF461Q8TAF7 563 aa18.31■□□□□ 0.52
SNX1-208ENST00000559844 ABI2Q9NYB9 513 aaPredicted RBP18.31■□□□□ 0.52
SNX1-208ENST00000559844 RABGEF1Q9UJ41 708 aa18.31■□□□□ 0.52
SNX1-208ENST00000559844 FBXW11Q9UKB1 542 aa18.31■□□□□ 0.52
SNX1-208ENST00000559844 RAD54BQ9Y620 910 aa18.31■□□□□ 0.52
SNX1-208ENST00000559844 MTMR11A4FU01 709 aa18.31■□□□□ 0.52
SNX1-208ENST00000559844 RASA4BC9J798 803 aa18.31■□□□□ 0.52
SNX1-208ENST00000559844 RASA4O43374 803 aa18.31■□□□□ 0.52
SNX1-208ENST00000559844 STK10O94804 968 aaKnown RBP18.31■□□□□ 0.52
SNX1-208ENST00000559844 MAP3K6O95382 1288 aa18.31■□□□□ 0.52
SNX1-208ENST00000559844 TPSB2P20231 275 aa18.31■□□□□ 0.52
SNX1-208ENST00000559844 HCAR3P49019 387 aa18.31■□□□□ 0.52
SNX1-208ENST00000559844 PPARDQ03181 441 aa18.31■□□□□ 0.52
SNX1-208ENST00000559844 PDK1Q15118 436 aa18.31■□□□□ 0.52
SNX1-208ENST00000559844 TPSAB1Q15661 275 aa18.31■□□□□ 0.52
SNX1-208ENST00000559844 CAPN12Q6ZSI9 719 aa18.31■□□□□ 0.52
SNX1-208ENST00000559844 BHLHA9Q7RTU4 235 aa18.31■□□□□ 0.52
SNX1-208ENST00000559844 ATAD1Q8NBU5 361 aa18.31■□□□□ 0.52
SNX1-208ENST00000559844 CCDC110Q8TBZ0 833 aa18.31■□□□□ 0.52
SNX1-208ENST00000559844 HTR3CQ8WXA8 447 aa18.31■□□□□ 0.52
SNX1-208ENST00000559844 RHOBTB2Q9BYZ6 727 aa18.31■□□□□ 0.52
SNX1-208ENST00000559844 ACSS3Q9H6R3 686 aa18.31■□□□□ 0.52
SNX1-208ENST00000559844 ETNK1Q9HBU6 452 aa18.31■□□□□ 0.52
SNX1-208ENST00000559844 WDR6Q9NNW5 1121 aaKnown RBP18.31■□□□□ 0.52
SNX1-208ENST00000559844 KCNK9Q9NPC2 374 aa18.31■□□□□ 0.52
SNX1-208ENST00000559844 GGA2Q9UJY4 613 aa18.31■□□□□ 0.52
SNX1-208ENST00000559844 PPP1R12AO14974 1030 aaPredicted RBP18.3■□□□□ 0.52
Retrieved 100 of 20,778 RNA–protein pairs in 26.2 ms