RNA–Protein interactions for RNA: ENST00000559119.1

VPS13C-208, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 2

Gene VPS13C, Length 738 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-208ENST00000559119 KRCC1Q9NPI7 259 aaPredicted RBP5.13□□□□□ -1.59
VPS13C-208ENST00000559119 MTPAPQ9NVV4 582 aaKnown RBP eCLIP5.13□□□□□ -1.59
VPS13C-208ENST00000559119 TBC1D14Q9P2M4 693 aa5.13□□□□□ -1.59
VPS13C-208ENST00000559119 UBE2J1Q9Y385 318 aaPredicted RBP5.13□□□□□ -1.59
VPS13C-208ENST00000559119 OR6C75A6NL08 312 aa5.12□□□□□ -1.59
VPS13C-208ENST00000559119 NPC1O15118 1278 aa5.12□□□□□ -1.59
VPS13C-208ENST00000559119 PQBP1O60828 265 aaKnown RBP5.12□□□□□ -1.59
VPS13C-208ENST00000559119 IGKV3-20P01619 116 aa5.12□□□□□ -1.59
VPS13C-208ENST00000559119 PECAM1P16284 738 aaPredicted RBP5.12□□□□□ -1.59
VPS13C-208ENST00000559119 ZNF543Q08ER8 600 aa5.12□□□□□ -1.59
VPS13C-208ENST00000559119 GALEQ14376 348 aa5.12□□□□□ -1.59
VPS13C-208ENST00000559119 PRAMEF19Q5SWL8 479 aa5.12□□□□□ -1.59
VPS13C-208ENST00000559119 RBM23Q86U06 439 aaKnown RBP5.12□□□□□ -1.59
VPS13C-208ENST00000559119 CUZD1Q86UP6 607 aa5.12□□□□□ -1.59
VPS13C-208ENST00000559119 PAQR4Q8N4S7 273 aaPredicted RBP5.12□□□□□ -1.59
VPS13C-208ENST00000559119 NR4A3Q92570 626 aa5.12□□□□□ -1.59
VPS13C-208ENST00000559119 TM6SF1Q9BZW5 370 aa5.12□□□□□ -1.59
VPS13C-208ENST00000559119 C6orf106Q9H6K1 298 aaPredicted RBP5.12□□□□□ -1.59
VPS13C-208ENST00000559119 PLAC1Q9HBJ0 212 aa5.12□□□□□ -1.59
VPS13C-208ENST00000559119 NCKIPSDQ9NZQ3 722 aa5.12□□□□□ -1.59
VPS13C-208ENST00000559119 MYO1AQ9UBC5 1043 aa5.12□□□□□ -1.59
VPS13C-208ENST00000559119 KPNA5O15131 536 aa5.11□□□□□ -1.59
VPS13C-208ENST00000559119 EGR1P18146 543 aa5.11□□□□□ -1.59
VPS13C-208ENST00000559119 PIK3CBP42338 1070 aa5.11□□□□□ -1.59
VPS13C-208ENST00000559119 PCYT1AP49585 367 aa5.11□□□□□ -1.59
VPS13C-208ENST00000559119 CRYZQ08257 329 aaKnown RBP5.11□□□□□ -1.59
VPS13C-208ENST00000559119 CSHL1Q14406 222 aa5.11□□□□□ -1.59
VPS13C-208ENST00000559119 IZUMO4Q1ZYL8 232 aa5.11□□□□□ -1.59
VPS13C-208ENST00000559119 GFI1BQ5VTD9 330 aa5.11□□□□□ -1.59
VPS13C-208ENST00000559119 WDR93Q6P2C0 686 aa5.11□□□□□ -1.59
VPS13C-208ENST00000559119 GPSM1Q86YR5 675 aa5.11□□□□□ -1.59
VPS13C-208ENST00000559119 PRR26Q8N8Z3 221 aa5.11□□□□□ -1.59
VPS13C-208ENST00000559119 FAR2Q96K12 515 aa5.11□□□□□ -1.59
VPS13C-208ENST00000559119 CDT1Q9H211 546 aa5.11□□□□□ -1.59
VPS13C-208ENST00000559119 TNFSF13BQ9Y275 285 aa5.11□□□□□ -1.59
VPS13C-208ENST00000559119 CAMTA2O94983 1202 aa5.1□□□□□ -1.59
VPS13C-208ENST00000559119 KAT7O95251 611 aa5.1□□□□□ -1.59
VPS13C-208ENST00000559119 GABRB3P28472 473 aa5.1□□□□□ -1.59
VPS13C-208ENST00000559119 RASSF2P50749 326 aa5.1□□□□□ -1.59
VPS13C-208ENST00000559119 NSUN2Q08J23 767 aaKnown RBP eCLIP5.1□□□□□ -1.59
VPS13C-208ENST00000559119 PMPCAQ10713 525 aa5.1□□□□□ -1.59
VPS13C-208ENST00000559119 GPR18Q14330 331 aa5.1□□□□□ -1.59
VPS13C-208ENST00000559119 DGKKQ5KSL6 1271 aa5.1□□□□□ -1.59
VPS13C-208ENST00000559119 CYB5RLQ6IPT4 315 aa5.1□□□□□ -1.59
VPS13C-208ENST00000559119 SLC16A12Q6ZSM3 486 aa5.1□□□□□ -1.59
VPS13C-208ENST00000559119 RTL10Q7L3V2 364 aa5.1□□□□□ -1.59
VPS13C-208ENST00000559119 RASGRP3Q8IV61 690 aa5.1□□□□□ -1.59
VPS13C-208ENST00000559119 LMO3Q8TAP4 145 aa5.1□□□□□ -1.59
VPS13C-208ENST00000559119 NPIPB3Q92617 1050 aa5.1□□□□□ -1.59
VPS13C-208ENST00000559119 KAT2AQ92830 837 aa5.1□□□□□ -1.59
VPS13C-208ENST00000559119 ZNF419Q96HQ0 510 aaPredicted RBP5.1□□□□□ -1.59
VPS13C-208ENST00000559119 URB1-AS1Q96HZ7 61 aa5.1□□□□□ -1.59
VPS13C-208ENST00000559119 RMI1Q9H9A7 625 aa5.1□□□□□ -1.59
VPS13C-208ENST00000559119 SFXN1Q9H9B4 322 aa5.1□□□□□ -1.59
VPS13C-208ENST00000559119 PLSCR4Q9NRQ2 329 aa5.1□□□□□ -1.59
VPS13C-208ENST00000559119 ICAM5Q9UMF0 924 aa5.1□□□□□ -1.59
VPS13C-208ENST00000559119 PCDHGB1Q9Y5G3 927 aa5.1□□□□□ -1.59
VPS13C-208ENST00000559119 PTGDR2Q9Y5Y4 395 aa5.1□□□□□ -1.59
VPS13C-208ENST00000559119 BECN2A8MW95 431 aa5.09□□□□□ -1.59
VPS13C-208ENST00000559119 ERVV-2B6SEH9 535 aa5.09□□□□□ -1.59
VPS13C-208ENST00000559119 INAFM1C9JVW0 142 aa5.09□□□□□ -1.59
VPS13C-208ENST00000559119 NDST3O95803 873 aa5.09□□□□□ -1.59
VPS13C-208ENST00000559119 TSHRP16473 764 aa5.09□□□□□ -1.59
VPS13C-208ENST00000559119 HOXD3P31249 432 aaPredicted RBP5.09□□□□□ -1.59
VPS13C-208ENST00000559119 GALNT3Q14435 633 aa5.09□□□□□ -1.59
VPS13C-208ENST00000559119 ALG10Q5BKT4 473 aa5.09□□□□□ -1.59
VPS13C-208ENST00000559119 ALG10BQ5I7T1 473 aa5.09□□□□□ -1.59
VPS13C-208ENST00000559119 C10orf76Q5T2E6 689 aa5.09□□□□□ -1.59
VPS13C-208ENST00000559119 OTUD1Q5VV17 481 aaPredicted RBP5.09□□□□□ -1.59
VPS13C-208ENST00000559119 MSANTD2Q6P1R3 559 aa5.09□□□□□ -1.59
VPS13C-208ENST00000559119 KDELC2Q7Z4H8 507 aa5.09□□□□□ -1.59
VPS13C-208ENST00000559119 RNF152Q8N8N0 203 aa5.09□□□□□ -1.59
VPS13C-208ENST00000559119 TTC8Q8TAM2 541 aa5.09□□□□□ -1.59
VPS13C-208ENST00000559119 SLC22A17Q8WUG5 538 aa5.09□□□□□ -1.59
VPS13C-208ENST00000559119 TTC17Q96AE7 1141 aa5.09□□□□□ -1.59
VPS13C-208ENST00000559119 EIF2AQ9BY44 585 aaKnown RBP5.09□□□□□ -1.59
VPS13C-208ENST00000559119 DDX24Q9GZR7 859 aaKnown RBP eCLIP5.09□□□□□ -1.59
VPS13C-208ENST00000559119 FZD10Q9ULW2 581 aa5.09□□□□□ -1.59
VPS13C-208ENST00000559119 LMTK3Q96Q04 1460 aa5.08□□□□□ -1.6
VPS13C-208ENST00000559119 A0A1B0GVT2 93 aa5.08□□□□□ -1.6
VPS13C-208ENST00000559119 A0A1W2PPC4 97 aa5.08□□□□□ -1.6
VPS13C-208ENST00000559119 CXorf65A6NEN9 183 aa5.08□□□□□ -1.6
VPS13C-208ENST00000559119 J3KTA2 159 aa5.08□□□□□ -1.6
VPS13C-208ENST00000559119 APOL1O14791 398 aa5.08□□□□□ -1.6
VPS13C-208ENST00000559119 MSI1O43347 362 aaKnown RBP5.08□□□□□ -1.6
VPS13C-208ENST00000559119 SPRY3O43610 288 aa5.08□□□□□ -1.6
VPS13C-208ENST00000559119 PKMP14618 531 aaKnown RBP5.08□□□□□ -1.6
VPS13C-208ENST00000559119 ARSBP15848 533 aa5.08□□□□□ -1.6
VPS13C-208ENST00000559119 STT3AP46977 705 aa5.08□□□□□ -1.6
VPS13C-208ENST00000559119 ART1P52961 327 aa5.08□□□□□ -1.6
VPS13C-208ENST00000559119 SHC2P98077 582 aa5.08□□□□□ -1.6
VPS13C-208ENST00000559119 SHBQ15464 509 aa5.08□□□□□ -1.6
VPS13C-208ENST00000559119 MAPKAPK3Q16644 382 aa5.08□□□□□ -1.6
VPS13C-208ENST00000559119 ENTPD8Q5MY95 495 aa5.08□□□□□ -1.6
VPS13C-208ENST00000559119 GSG1LQ6UXU4 331 aa5.08□□□□□ -1.6
VPS13C-208ENST00000559119 C14orf80Q86SX3 495 aa5.08□□□□□ -1.6
VPS13C-208ENST00000559119 CADM3Q8N126 398 aa5.08□□□□□ -1.6
VPS13C-208ENST00000559119 GABPB2Q8TAK5 448 aaPredicted RBP5.08□□□□□ -1.6
VPS13C-208ENST00000559119 SLITRK1Q96PX8 696 aa5.08□□□□□ -1.6
VPS13C-208ENST00000559119 COLEC11Q9BWP8 271 aa5.08□□□□□ -1.6
Retrieved 100 of 20,778 RNA–protein pairs in 42.9 ms