RNA–Protein interactions for RNA: ENST00000558518.5

LDLR-208, Transcript of low density lipoprotein receptor, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LDLR, Length 3,617 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-208ENST00000558518 PRPSAP1Q14558 356 aa11.61□□□□□ -0.55
LDLR-208ENST00000558518 GOLGA7BQ2TAP0 167 aa11.61□□□□□ -0.55
LDLR-208ENST00000558518 ZBTB8OSQ8IWT0 167 aa11.61□□□□□ -0.55
LDLR-208ENST00000558518 NAT16Q8N8M0 369 aa11.61□□□□□ -0.55
LDLR-208ENST00000558518 OR52K1Q8NGK4 314 aa11.61□□□□□ -0.55
LDLR-208ENST00000558518 PAIP1Q9H074 479 aaKnown RBP11.61□□□□□ -0.55
LDLR-208ENST00000558518 WDR41Q9HAD4 459 aa11.61□□□□□ -0.55
LDLR-208ENST00000558518 COPG2Q9UBF2 871 aa11.61□□□□□ -0.55
LDLR-208ENST00000558518 TMCO1Q9UM00 188 aa11.61□□□□□ -0.55
LDLR-208ENST00000558518 A0A096LPK6 155 aa11.61□□□□□ -0.55
LDLR-208ENST00000558518 ATP6AP2A0A1C7CYW4 349 aa11.61□□□□□ -0.55
LDLR-208ENST00000558518 GIPC1O14908 333 aa11.61□□□□□ -0.55
LDLR-208ENST00000558518 ATP6AP2O75787 350 aa11.61□□□□□ -0.55
LDLR-208ENST00000558518 PIGNO95427 931 aa11.61□□□□□ -0.55
LDLR-208ENST00000558518 CASP2P42575 452 aa11.61□□□□□ -0.55
LDLR-208ENST00000558518 PTGER2P43116 358 aa11.61□□□□□ -0.55
LDLR-208ENST00000558518 GABRB2P47870 512 aa11.61□□□□□ -0.55
LDLR-208ENST00000558518 SERPINB8P50452 374 aa11.61□□□□□ -0.55
LDLR-208ENST00000558518 RABGGTBP53611 331 aa11.61□□□□□ -0.55
LDLR-208ENST00000558518 NAA20P61599 178 aa11.61□□□□□ -0.55
LDLR-208ENST00000558518 MYBPC1Q00872 1141 aa11.61□□□□□ -0.55
LDLR-208ENST00000558518 DCTN2Q13561 401 aaKnown RBP11.61□□□□□ -0.55
LDLR-208ENST00000558518 GLRA4Q5JXX5 417 aa11.61□□□□□ -0.55
LDLR-208ENST00000558518 VSIG10LQ86VR7 867 aa11.61□□□□□ -0.55
LDLR-208ENST00000558518 TP53INP2Q8IXH6 220 aa11.61□□□□□ -0.55
LDLR-208ENST00000558518 TSPAN14Q8NG11 270 aa11.61□□□□□ -0.55
LDLR-208ENST00000558518 SREK1Q8WXA9 508 aaKnown RBP11.61□□□□□ -0.55
LDLR-208ENST00000558518 JADE3Q92613 823 aa11.61□□□□□ -0.55
LDLR-208ENST00000558518 SLC39A3Q9BRY0 314 aa11.61□□□□□ -0.55
LDLR-208ENST00000558518 CNPY3Q9BT09 278 aa11.61□□□□□ -0.55
LDLR-208ENST00000558518 PIF1Q9H611 641 aa11.61□□□□□ -0.55
LDLR-208ENST00000558518 CCDC167Q9P0B6 97 aa11.61□□□□□ -0.55
LDLR-208ENST00000558518 EMCNQ9ULC0 261 aa11.61□□□□□ -0.55
LDLR-208ENST00000558518 TMX2-CTNND1H3BSU7 103 aa11.61□□□□□ -0.55
LDLR-208ENST00000558518 MT-ND1P03886 318 aa11.61□□□□□ -0.55
LDLR-208ENST00000558518 CDK4P11802 303 aa11.61□□□□□ -0.55
LDLR-208ENST00000558518 IFRD2Q12894 506 aaPredicted RBP11.61□□□□□ -0.55
LDLR-208ENST00000558518 TBCCQ15814 346 aa11.61□□□□□ -0.55
LDLR-208ENST00000558518 TRNP1Q6NT89 227 aa11.61□□□□□ -0.55
LDLR-208ENST00000558518 KLC3Q6P597 504 aa11.61□□□□□ -0.55
LDLR-208ENST00000558518 KYAT3Q6YP21 454 aaKnown RBP11.61□□□□□ -0.55
LDLR-208ENST00000558518 GK5Q6ZS86 529 aa11.61□□□□□ -0.55
LDLR-208ENST00000558518 BRSK2Q8IWQ3 736 aa11.61□□□□□ -0.55
LDLR-208ENST00000558518 RNF168Q8IYW5 571 aaPredicted RBP11.61□□□□□ -0.55
LDLR-208ENST00000558518 OR6B3Q8NGW1 331 aa11.61□□□□□ -0.55
LDLR-208ENST00000558518 ACTRT2Q8TDY3 377 aa11.61□□□□□ -0.55
LDLR-208ENST00000558518 LRTOMTQ8WZ04 291 aa11.61□□□□□ -0.55
LDLR-208ENST00000558518 SIGLEC10Q96LC7 697 aa11.61□□□□□ -0.55
LDLR-208ENST00000558518 PCDH18Q9HCL0 1135 aa11.61□□□□□ -0.55
LDLR-208ENST00000558518 SNX15Q9NRS6 342 aa11.61□□□□□ -0.55
LDLR-208ENST00000558518 HSFX1Q9UBD0 423 aa11.61□□□□□ -0.55
LDLR-208ENST00000558518 PSMD13Q9UNM6 376 aa11.61□□□□□ -0.55
LDLR-208ENST00000558518 SNX9Q9Y5X1 595 aa11.61□□□□□ -0.55
LDLR-208ENST00000558518 SBF2Q86WG5 1849 aa11.61□□□□□ -0.55
LDLR-208ENST00000558518 CEP350Q5VT06 3117 aa11.61□□□□□ -0.55
LDLR-208ENST00000558518 RGS20O76081 388 aa11.6□□□□□ -0.55
LDLR-208ENST00000558518 SUPT20HL2P0C7V6 817 aa11.6□□□□□ -0.55
LDLR-208ENST00000558518 KCNA2P16389 499 aa11.6□□□□□ -0.55
LDLR-208ENST00000558518 GOT1P17174 413 aa11.6□□□□□ -0.55
LDLR-208ENST00000558518 ASPAP45381 313 aa11.6□□□□□ -0.55
LDLR-208ENST00000558518 ENTPD1P49961 510 aa11.6□□□□□ -0.55
LDLR-208ENST00000558518 STAT5BP51692 787 aa11.6□□□□□ -0.55
LDLR-208ENST00000558518 PDAP1Q13442 181 aaKnown RBP11.6□□□□□ -0.55
LDLR-208ENST00000558518 PTK2BQ14289 1009 aa11.6□□□□□ -0.55
LDLR-208ENST00000558518 SUPT20HL1Q3ZLR7 823 aa11.6□□□□□ -0.55
LDLR-208ENST00000558518 SLC44A4Q53GD3 710 aa11.6□□□□□ -0.55
LDLR-208ENST00000558518 FAM47CQ5HY64 1035 aa11.6□□□□□ -0.55
LDLR-208ENST00000558518 IL23RQ5VWK5 629 aa11.6□□□□□ -0.55
LDLR-208ENST00000558518 CHST15Q7LFX5 561 aaPredicted RBP11.6□□□□□ -0.55
LDLR-208ENST00000558518 PRICKLE1Q96MT3 831 aaPredicted RBP11.6□□□□□ -0.55
LDLR-208ENST00000558518 HAPLN3Q96S86 360 aa11.6□□□□□ -0.55
LDLR-208ENST00000558518 APBA2Q99767 749 aa11.6□□□□□ -0.55
LDLR-208ENST00000558518 TRIM8Q9BZR9 551 aa11.6□□□□□ -0.55
LDLR-208ENST00000558518 PORCNQ9H237 461 aa11.6□□□□□ -0.55
LDLR-208ENST00000558518 ARMC7Q9H6L4 198 aa11.6□□□□□ -0.55
LDLR-208ENST00000558518 SLC38A10Q9HBR0 1119 aa11.6□□□□□ -0.55
LDLR-208ENST00000558518 TLK1Q9UKI8 766 aa11.6□□□□□ -0.55
LDLR-208ENST00000558518 SMIM18P0DKX4 95 aa11.6□□□□□ -0.55
LDLR-208ENST00000558518 HNRNPLP14866 589 aaKnown RBP eCLIP11.6□□□□□ -0.55
LDLR-208ENST00000558518 EEF1B2P24534 225 aaKnown RBP11.6□□□□□ -0.55
LDLR-208ENST00000558518 SLC5A2P31639 672 aa11.6□□□□□ -0.55
LDLR-208ENST00000558518 NAMPTP43490 491 aa11.6□□□□□ -0.55
LDLR-208ENST00000558518 SLC10A2Q12908 348 aaPredicted RBP11.6□□□□□ -0.55
LDLR-208ENST00000558518 DGKDQ16760 1214 aa11.6□□□□□ -0.55
LDLR-208ENST00000558518 LSM12Q3MHD2 195 aaKnown RBP11.6□□□□□ -0.55
LDLR-208ENST00000558518 CMASQ8NFW8 434 aaPredicted RBP11.6□□□□□ -0.55
LDLR-208ENST00000558518 CYGBQ8WWM9 190 aa11.6□□□□□ -0.55
LDLR-208ENST00000558518 TMEM176AQ96HP8 235 aa11.6□□□□□ -0.55
LDLR-208ENST00000558518 NOL11Q9H8H0 719 aaKnown RBP11.6□□□□□ -0.55
LDLR-208ENST00000558518 IARS2Q9NSE4 1012 aaKnown RBP11.6□□□□□ -0.55
LDLR-208ENST00000558518 PTTG2Q9NZH5 202 aa11.6□□□□□ -0.55
LDLR-208ENST00000558518 CLEC11AQ9Y240 323 aa11.6□□□□□ -0.55
LDLR-208ENST00000558518 RNF103-CHMP3A0A140T963 221 aa11.6□□□□□ -0.55
LDLR-208ENST00000558518 KLF11O14901 512 aa11.6□□□□□ -0.55
LDLR-208ENST00000558518 OGTO15294 1046 aa11.6□□□□□ -0.55
LDLR-208ENST00000558518 SNNO75324 88 aaPredicted RBP11.6□□□□□ -0.55
LDLR-208ENST00000558518 JUNP05412 331 aaKnown RBP11.6□□□□□ -0.55
LDLR-208ENST00000558518 UGT1A6P19224 532 aa11.6□□□□□ -0.55
LDLR-208ENST00000558518 NR4A1P22736 598 aa11.6□□□□□ -0.55
LDLR-208ENST00000558518 GARSP41250 739 aaKnown RBP11.6□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 46.3 ms