RNA–Protein interactions for RNA: ENST00000553888.5

VIPAS39-206, Transcript of VPS33B interacting protein, apical-basolateral polarity regulator, spe-39 homolog, humanhuman

APPRIS P1 TSL 2 BASIC

Gene VIPAS39, Length 2,934 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIPAS39-206ENST00000553888 XPO6Q96QU8 1125 aaKnown RBP13.1□□□□□ -0.31
VIPAS39-206ENST00000553888 TMEM175Q9BSA9 504 aa13.1□□□□□ -0.31
VIPAS39-206ENST00000553888 CCSER2Q9H7U1 834 aa13.1□□□□□ -0.31
VIPAS39-206ENST00000553888 CHD7Q9P2D1 2997 aa13.1□□□□□ -0.31
VIPAS39-206ENST00000553888 HS3ST4Q9Y661 456 aa13.1□□□□□ -0.31
VIPAS39-206ENST00000553888 KIAA1671Q9BY89 1806 aa13.1□□□□□ -0.31
VIPAS39-206ENST00000553888 A0A1W2PPM1 405 aa13.1□□□□□ -0.31
VIPAS39-206ENST00000553888 HACD1B0YJ81 288 aa13.1□□□□□ -0.31
VIPAS39-206ENST00000553888 DFFAO00273 331 aa13.1□□□□□ -0.31
VIPAS39-206ENST00000553888 CDH16O75309 829 aa13.1□□□□□ -0.31
VIPAS39-206ENST00000553888 USP12O75317 370 aa13.1□□□□□ -0.31
VIPAS39-206ENST00000553888 SPAG7O75391 227 aa13.1□□□□□ -0.31
VIPAS39-206ENST00000553888 PTPN3P26045 913 aa13.1□□□□□ -0.31
VIPAS39-206ENST00000553888 YWHAQP27348 245 aa13.1□□□□□ -0.31
VIPAS39-206ENST00000553888 CCR1P32246 355 aa13.1□□□□□ -0.31
VIPAS39-206ENST00000553888 GLUD2P49448 558 aa13.1□□□□□ -0.31
VIPAS39-206ENST00000553888 FOXD4Q12950 439 aaPredicted RBP13.1□□□□□ -0.31
VIPAS39-206ENST00000553888 PSMD5Q16401 504 aa13.1□□□□□ -0.31
VIPAS39-206ENST00000553888 CNKSR3Q6P9H4 555 aa13.1□□□□□ -0.31
VIPAS39-206ENST00000553888 PID1Q7Z2X4 250 aa13.1□□□□□ -0.31
VIPAS39-206ENST00000553888 MAML1Q92585 1016 aa13.1□□□□□ -0.31
VIPAS39-206ENST00000553888 ZNF419Q96HQ0 510 aaPredicted RBP13.1□□□□□ -0.31
VIPAS39-206ENST00000553888 KCNK9Q9NPC2 374 aa13.1□□□□□ -0.31
VIPAS39-206ENST00000553888 TCRBV9S1A1TA0A576 114 aa13.09□□□□□ -0.31
VIPAS39-206ENST00000553888 TMEM120BA0PK00 339 aa13.09□□□□□ -0.31
VIPAS39-206ENST00000553888 PPP1R12AO14974 1030 aaPredicted RBP13.09□□□□□ -0.31
VIPAS39-206ENST00000553888 FAM155BO75949 473 aa13.09□□□□□ -0.31
VIPAS39-206ENST00000553888 HAPLN1P10915 354 aaPredicted RBP13.09□□□□□ -0.31
VIPAS39-206ENST00000553888 MAGEA11P43364 429 aa13.09□□□□□ -0.31
VIPAS39-206ENST00000553888 HNRNPH2P55795 449 aaKnown RBP13.09□□□□□ -0.31
VIPAS39-206ENST00000553888 CEP128Q6ZU80 1094 aa13.09□□□□□ -0.31
VIPAS39-206ENST00000553888 UNC5BQ8IZJ1 945 aa13.09□□□□□ -0.31
VIPAS39-206ENST00000553888 IGSF21Q96ID5 467 aa13.09□□□□□ -0.31
VIPAS39-206ENST00000553888 CCDC77Q9BR77 488 aa13.09□□□□□ -0.31
VIPAS39-206ENST00000553888 LGALS13Q9UHV8 139 aa13.09□□□□□ -0.31
VIPAS39-206ENST00000553888 MAD1L1Q9Y6D9 718 aa13.09□□□□□ -0.31
VIPAS39-206ENST00000553888 ZBTB24O43167 697 aaPredicted RBP13.09□□□□□ -0.31
VIPAS39-206ENST00000553888 SEC24AO95486 1093 aa13.09□□□□□ -0.31
VIPAS39-206ENST00000553888 IVLP07476 585 aa13.09□□□□□ -0.31
VIPAS39-206ENST00000553888 DNAJB2P25686 324 aa13.09□□□□□ -0.31
VIPAS39-206ENST00000553888 SEMA5AQ13591 1074 aa13.09□□□□□ -0.31
VIPAS39-206ENST00000553888 ANKS3Q6ZW76 656 aa13.09□□□□□ -0.31
VIPAS39-206ENST00000553888 C4orf33Q8N1A6 199 aa13.09□□□□□ -0.31
VIPAS39-206ENST00000553888 ATXN2LQ8WWM7 1075 aaKnown RBP13.09□□□□□ -0.31
VIPAS39-206ENST00000553888 PRMT1Q99873 361 aaKnown RBP13.09□□□□□ -0.31
VIPAS39-206ENST00000553888 FBXO44Q9H4M3 255 aa13.09□□□□□ -0.31
VIPAS39-206ENST00000553888 UBP1Q9NZI7 540 aa13.09□□□□□ -0.31
VIPAS39-206ENST00000553888 KLHL8Q9P2G9 620 aaPredicted RBP13.09□□□□□ -0.31
VIPAS39-206ENST00000553888 VANGL2Q9ULK5 521 aa13.09□□□□□ -0.31
VIPAS39-206ENST00000553888 CXorf49A8MYA2 514 aaPredicted RBP13.09□□□□□ -0.31
VIPAS39-206ENST00000553888 KCNU1A8MYU2 1149 aa13.09□□□□□ -0.31
VIPAS39-206ENST00000553888 RASA4BC9J798 803 aa13.09□□□□□ -0.31
VIPAS39-206ENST00000553888 NDC80O14777 642 aa13.09□□□□□ -0.31
VIPAS39-206ENST00000553888 RASA4O43374 803 aa13.09□□□□□ -0.31
VIPAS39-206ENST00000553888 CSPG5O95196 566 aa13.09□□□□□ -0.31
VIPAS39-206ENST00000553888 BRAFP15056 766 aa13.09□□□□□ -0.31
VIPAS39-206ENST00000553888 CD68P34810 354 aaPredicted RBP13.09□□□□□ -0.31
VIPAS39-206ENST00000553888 GARSP41250 739 aaKnown RBP13.09□□□□□ -0.31
VIPAS39-206ENST00000553888 MAGEA6P43360 314 aa13.09□□□□□ -0.31
VIPAS39-206ENST00000553888 CCT5P48643 541 aa13.09□□□□□ -0.31
VIPAS39-206ENST00000553888 HCAR3P49019 387 aa13.09□□□□□ -0.31
VIPAS39-206ENST00000553888 KBTBD12Q3ZCT8 623 aa13.09□□□□□ -0.31
VIPAS39-206ENST00000553888 C10orf120Q5SQS8 335 aa13.09□□□□□ -0.31
VIPAS39-206ENST00000553888 BZW1Q7L1Q6 419 aaKnown RBP13.09□□□□□ -0.31
VIPAS39-206ENST00000553888 BEND5Q7L4P6 421 aa13.09□□□□□ -0.31
VIPAS39-206ENST00000553888 TFAP2DQ7Z6R9 452 aa13.09□□□□□ -0.31
VIPAS39-206ENST00000553888 MYEOVQ96EZ4 313 aa13.09□□□□□ -0.31
VIPAS39-206ENST00000553888 PAFAH2Q99487 392 aa13.09□□□□□ -0.31
VIPAS39-206ENST00000553888 KLF6Q99612 283 aaPredicted RBP13.09□□□□□ -0.31
VIPAS39-206ENST00000553888 OSBPL2Q9H1P3 480 aa13.09□□□□□ -0.31
VIPAS39-206ENST00000553888 E9PAM4 449 aa13.08□□□□□ -0.32
VIPAS39-206ENST00000553888 UGT1A9O60656 530 aa13.08□□□□□ -0.32
VIPAS39-206ENST00000553888 TUBP50607 506 aa13.08□□□□□ -0.32
VIPAS39-206ENST00000553888 TBX4P57082 545 aa13.08□□□□□ -0.32
VIPAS39-206ENST00000553888 SESN2P58004 480 aaPredicted RBP13.08□□□□□ -0.32
VIPAS39-206ENST00000553888 PPIDQ08752 370 aaKnown RBP13.08□□□□□ -0.32
VIPAS39-206ENST00000553888 GALNT2Q10471 571 aa13.08□□□□□ -0.32
VIPAS39-206ENST00000553888 QPCTQ16769 361 aa13.08□□□□□ -0.32
VIPAS39-206ENST00000553888 TRMT10BQ6PF06 316 aaKnown RBP13.08□□□□□ -0.32
VIPAS39-206ENST00000553888 CIR1Q86X95 450 aaPredicted RBP13.08□□□□□ -0.32
VIPAS39-206ENST00000553888 ARHGAP12Q8IWW6 846 aa13.08□□□□□ -0.32
VIPAS39-206ENST00000553888 GDAP1Q8TB36 358 aa13.08□□□□□ -0.32
VIPAS39-206ENST00000553888 SPPL2BQ8TCT7 592 aa13.08□□□□□ -0.32
VIPAS39-206ENST00000553888 SIGLEC10Q96LC7 697 aa13.08□□□□□ -0.32
VIPAS39-206ENST00000553888 APOL2Q9BQE5 337 aa13.08□□□□□ -0.32
VIPAS39-206ENST00000553888 CLSTN3Q9BQT9 956 aa13.08□□□□□ -0.32
VIPAS39-206ENST00000553888 UGT1A7Q9HAW7 530 aa13.08□□□□□ -0.32
VIPAS39-206ENST00000553888 UGT1A10Q9HAW8 530 aa13.08□□□□□ -0.32
VIPAS39-206ENST00000553888 UGT1A8Q9HAW9 530 aa13.08□□□□□ -0.32
VIPAS39-206ENST00000553888 SMYD2Q9NRG4 433 aa13.08□□□□□ -0.32
VIPAS39-206ENST00000553888 MTPAPQ9NVV4 582 aaKnown RBP eCLIP13.08□□□□□ -0.32
VIPAS39-206ENST00000553888 IL1RAPL1Q9NZN1 696 aa13.08□□□□□ -0.32
VIPAS39-206ENST00000553888 SLC17A6Q9P2U8 582 aa13.08□□□□□ -0.32
VIPAS39-206ENST00000553888 ZC3H7BQ9UGR2 993 aaKnown RBP13.08□□□□□ -0.32
VIPAS39-206ENST00000553888 MYLKQ15746 1914 aa13.08□□□□□ -0.32
VIPAS39-206ENST00000553888 DOCK6Q96HP0 2047 aa13.08□□□□□ -0.32
VIPAS39-206ENST00000553888 EFEMP2O95967 443 aa13.08□□□□□ -0.32
VIPAS39-206ENST00000553888 GEMIN4P57678 1058 aaKnown RBP13.08□□□□□ -0.32
VIPAS39-206ENST00000553888 ELAVL2Q12926 359 aaKnown RBP13.08□□□□□ -0.32
VIPAS39-206ENST00000553888 USP41Q3LFD5 358 aa13.08□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 19.2 ms