RNA–Protein interactions for RNA: ENST00000545856.5

PRPF40A-212, Transcript of pre-mRNA processing factor 40 homolog A, humanhuman

TSL 1 (best)

Gene PRPF40A, Length 1,358 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40A-212ENST00000545856 CXorf51AA0A1B0GTR3 108 aa16.51■□□□□ 0.23
PRPF40A-212ENST00000545856 APOL1O14791 398 aa16.51■□□□□ 0.23
PRPF40A-212ENST00000545856 CREB3O43889 395 aa16.51■□□□□ 0.23
PRPF40A-212ENST00000545856 NFATC1O95644 943 aa16.51■□□□□ 0.23
PRPF40A-212ENST00000545856 FGGP02679 453 aa16.51■□□□□ 0.23
PRPF40A-212ENST00000545856 IRF1P10914 325 aa16.51■□□□□ 0.23
PRPF40A-212ENST00000545856 GOT1P17174 413 aa16.51■□□□□ 0.23
PRPF40A-212ENST00000545856 MX2P20592 715 aa16.51■□□□□ 0.23
PRPF40A-212ENST00000545856 FCARP24071 287 aa16.51■□□□□ 0.23
PRPF40A-212ENST00000545856 ETFBP38117 255 aa16.51■□□□□ 0.23
PRPF40A-212ENST00000545856 DNA2P51530 1060 aa16.51■□□□□ 0.23
PRPF40A-212ENST00000545856 TUBB4BP68371 445 aa16.51■□□□□ 0.23
PRPF40A-212ENST00000545856 NADSYN1Q6IA69 706 aa16.51■□□□□ 0.23
PRPF40A-212ENST00000545856 FBXL22Q6P050 247 aa16.51■□□□□ 0.23
PRPF40A-212ENST00000545856 TMCO3Q6UWJ1 677 aa16.51■□□□□ 0.23
PRPF40A-212ENST00000545856 CCDC117Q8IWD4 279 aaPredicted RBP16.51■□□□□ 0.23
PRPF40A-212ENST00000545856 ZDHHC14Q8IZN3 488 aa16.51■□□□□ 0.23
PRPF40A-212ENST00000545856 CEP112Q8N8E3 955 aa16.51■□□□□ 0.23
PRPF40A-212ENST00000545856 ATP2A3Q93084 1043 aa16.51■□□□□ 0.23
PRPF40A-212ENST00000545856 RPRD1AQ96P16 312 aaPredicted RBP16.51■□□□□ 0.23
PRPF40A-212ENST00000545856 MYADMQ96S97 322 aa16.51■□□□□ 0.23
PRPF40A-212ENST00000545856 GPATCH2LQ9NWQ4 482 aa16.51■□□□□ 0.23
PRPF40A-212ENST00000545856 VANGL2Q9ULK5 521 aa16.51■□□□□ 0.23
PRPF40A-212ENST00000545856 NEU3Q9UQ49 428 aa16.51■□□□□ 0.23
PRPF40A-212ENST00000545856 CCL26Q9Y258 94 aa16.51■□□□□ 0.23
PRPF40A-212ENST00000545856 GRXCR2A6NFK2 248 aa16.5■□□□□ 0.23
PRPF40A-212ENST00000545856 ANHXE9PGG2 379 aa16.5■□□□□ 0.23
PRPF40A-212ENST00000545856 PI4K2BG5E9Z4 385 aa16.5■□□□□ 0.23
PRPF40A-212ENST00000545856 H3BQ06 376 aaPredicted RBP16.5■□□□□ 0.23
PRPF40A-212ENST00000545856 DCLK1O15075 740 aa16.5■□□□□ 0.23
PRPF40A-212ENST00000545856 PSMC3P17980 439 aa16.5■□□□□ 0.23
PRPF40A-212ENST00000545856 CXCR5P32302 372 aa16.5■□□□□ 0.23
PRPF40A-212ENST00000545856 IFNAR2P48551 515 aa16.5■□□□□ 0.23
PRPF40A-212ENST00000545856 NDST2P52849 883 aa16.5■□□□□ 0.23
PRPF40A-212ENST00000545856 YBEYP58557 167 aaPredicted RBP16.5■□□□□ 0.23
PRPF40A-212ENST00000545856 LONRF2Q1L5Z9 754 aa16.5■□□□□ 0.23
PRPF40A-212ENST00000545856 RAP1GAP2Q684P5 730 aa16.5■□□□□ 0.23
PRPF40A-212ENST00000545856 DRICH1Q6PGQ1 229 aaPredicted RBP16.5■□□□□ 0.23
PRPF40A-212ENST00000545856 SETD3Q86TU7 594 aaPredicted RBP16.5■□□□□ 0.23
PRPF40A-212ENST00000545856 UMODL1-AS1Q8N2C9 162 aa16.5■□□□□ 0.23
PRPF40A-212ENST00000545856 PCDH19Q8TAB3 1148 aa16.5■□□□□ 0.23
PRPF40A-212ENST00000545856 COG1Q8WTW3 980 aa16.5■□□□□ 0.23
PRPF40A-212ENST00000545856 PSMB7Q99436 277 aa16.5■□□□□ 0.23
PRPF40A-212ENST00000545856 SLC2A11Q9BYW1 496 aa16.5■□□□□ 0.23
PRPF40A-212ENST00000545856 KLHL11Q9NVR0 708 aa16.5■□□□□ 0.23
PRPF40A-212ENST00000545856 IGSF9Q9P2J2 1179 aa16.5■□□□□ 0.23
PRPF40A-212ENST00000545856 NUP205Q92621 2012 aa16.49■□□□□ 0.23
PRPF40A-212ENST00000545856 HEPACAM2A8MVW5 462 aa16.49■□□□□ 0.23
PRPF40A-212ENST00000545856 FAM72CH0Y354 149 aa16.49■□□□□ 0.23
PRPF40A-212ENST00000545856 CHADO15335 359 aa16.49■□□□□ 0.23
PRPF40A-212ENST00000545856 CST8O60676 142 aa16.49■□□□□ 0.23
PRPF40A-212ENST00000545856 ADH1CP00326 375 aa16.49■□□□□ 0.23
PRPF40A-212ENST00000545856 CD48P09326 243 aa16.49■□□□□ 0.23
PRPF40A-212ENST00000545856 ERCC2P18074 760 aa16.49■□□□□ 0.23
PRPF40A-212ENST00000545856 ZNF211Q13398 564 aaPredicted RBP16.49■□□□□ 0.23
PRPF40A-212ENST00000545856 XRCC4Q13426 336 aa16.49■□□□□ 0.23
PRPF40A-212ENST00000545856 SLC12A1Q13621 1099 aa16.49■□□□□ 0.23
PRPF40A-212ENST00000545856 C6orf118Q5T5N4 469 aa16.49■□□□□ 0.23
PRPF40A-212ENST00000545856 FAM72AQ5TYM5 149 aa16.49■□□□□ 0.23
PRPF40A-212ENST00000545856 FAM72DQ6L9T8 149 aa16.49■□□□□ 0.23
PRPF40A-212ENST00000545856 NLRP14Q86W24 1093 aa16.49■□□□□ 0.23
PRPF40A-212ENST00000545856 FAM72BQ86X60 149 aa16.49■□□□□ 0.23
PRPF40A-212ENST00000545856 RFX6Q8HWS3 928 aa16.49■□□□□ 0.23
PRPF40A-212ENST00000545856 BBS7Q8IWZ6 715 aa16.49■□□□□ 0.23
PRPF40A-212ENST00000545856 LGI2Q8N0V4 545 aa16.49■□□□□ 0.23
PRPF40A-212ENST00000545856 PYROXD2Q8N2H3 581 aa16.49■□□□□ 0.23
PRPF40A-212ENST00000545856 C12orf50Q8NA57 414 aaPredicted RBP16.49■□□□□ 0.23
PRPF40A-212ENST00000545856 HAUS1Q96CS2 278 aa16.49■□□□□ 0.23
PRPF40A-212ENST00000545856 TMA16Q96EY4 203 aaKnown RBP16.49■□□□□ 0.23
PRPF40A-212ENST00000545856 PRKAG3Q9UGI9 489 aa16.49■□□□□ 0.23
PRPF40A-212ENST00000545856 FEZ2Q9UHY8 353 aaPredicted RBP16.49■□□□□ 0.23
PRPF40A-212ENST00000545856 XPO7Q9UIA9 1087 aaKnown RBP16.49■□□□□ 0.23
PRPF40A-212ENST00000545856 HACD1B0YJ81 288 aa16.48■□□□□ 0.23
PRPF40A-212ENST00000545856 SRGAP2O75044 1071 aa16.48■□□□□ 0.23
PRPF40A-212ENST00000545856 PENKP01210 267 aaPredicted RBP16.48■□□□□ 0.23
PRPF40A-212ENST00000545856 SLC6A4P31645 630 aa16.48■□□□□ 0.23
PRPF40A-212ENST00000545856 NR1H3Q13133 447 aa16.48■□□□□ 0.23
PRPF40A-212ENST00000545856 HTR4Q13639 388 aa16.48■□□□□ 0.23
PRPF40A-212ENST00000545856 CCDC85BQ15834 202 aaPredicted RBP16.48■□□□□ 0.23
PRPF40A-212ENST00000545856 CCNG2Q16589 344 aa16.48■□□□□ 0.23
PRPF40A-212ENST00000545856 CYP1B1Q16678 543 aa16.48■□□□□ 0.23
PRPF40A-212ENST00000545856 PARP15Q460N3 678 aa16.48■□□□□ 0.23
PRPF40A-212ENST00000545856 RWDD4Q6NW29 188 aaKnown RBP16.48■□□□□ 0.23
PRPF40A-212ENST00000545856 YAF2Q8IY57 180 aa16.48■□□□□ 0.23
PRPF40A-212ENST00000545856 PQLC3Q8N755 202 aa16.48■□□□□ 0.23
PRPF40A-212ENST00000545856 PLD5Q8N7P1 536 aa16.48■□□□□ 0.23
PRPF40A-212ENST00000545856 MAFAQ8NHW3 353 aaPredicted RBP16.48■□□□□ 0.23
PRPF40A-212ENST00000545856 P3H4Q92791 437 aa16.48■□□□□ 0.23
PRPF40A-212ENST00000545856 IRF7Q92985 503 aa16.48■□□□□ 0.23
PRPF40A-212ENST00000545856 FATE1Q969F0 183 aa16.48■□□□□ 0.23
PRPF40A-212ENST00000545856 FERMT1Q9BQL6 677 aa16.48■□□□□ 0.23
PRPF40A-212ENST00000545856 SMG9Q9H0W8 520 aaKnown RBP16.48■□□□□ 0.23
PRPF40A-212ENST00000545856 TRPV5Q9NQA5 729 aa16.48■□□□□ 0.23
PRPF40A-212ENST00000545856 SPHK2Q9NRA0 654 aa16.48■□□□□ 0.23
PRPF40A-212ENST00000545856 TMPRSS4Q9NRS4 437 aa16.48■□□□□ 0.23
PRPF40A-212ENST00000545856 DUS2Q9NX74 493 aaKnown RBP16.48■□□□□ 0.23
PRPF40A-212ENST00000545856 TBC1D30Q9Y2I9 924 aa16.48■□□□□ 0.23
PRPF40A-212ENST00000545856 ILVBLA1L0T0 632 aa16.47■□□□□ 0.23
PRPF40A-212ENST00000545856 CFAP69A5D8W1 941 aa16.47■□□□□ 0.23
PRPF40A-212ENST00000545856 PPP1R12AO14974 1030 aaPredicted RBP16.47■□□□□ 0.23
Retrieved 100 of 20,778 RNA–protein pairs in 31.9 ms