RNA–Protein interactions for RNA: ENST00000540925.5

USP28-209, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 4

Gene USP28, Length 561 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-209ENST00000540925 FAM170AA1A519 330 aa14.67□□□□□ -0.06
USP28-209ENST00000540925 BCLAF3A2AJT9 711 aaKnown RBP14.67□□□□□ -0.06
USP28-209ENST00000540925 PAGE1O75459 146 aa14.67□□□□□ -0.06
USP28-209ENST00000540925 RHOBTB1O94844 696 aa14.67□□□□□ -0.06
USP28-209ENST00000540925 ZNF806P0C7X5 589 aa14.67□□□□□ -0.06
USP28-209ENST00000540925 ABCB4P21439 1286 aa14.67□□□□□ -0.06
USP28-209ENST00000540925 PBX1P40424 430 aa14.67□□□□□ -0.06
USP28-209ENST00000540925 RNASE9P60153 205 aaKnown RBP14.67□□□□□ -0.06
USP28-209ENST00000540925 NME3Q13232 169 aa14.67□□□□□ -0.06
USP28-209ENST00000540925 ARID5BQ14865 1188 aa14.67□□□□□ -0.06
USP28-209ENST00000540925 ZSCAN23Q3MJ62 389 aa14.67□□□□□ -0.06
USP28-209ENST00000540925 BRMS1LQ5PSV4 323 aa14.67□□□□□ -0.06
USP28-209ENST00000540925 TTC39BQ5VTQ0 682 aaPredicted RBP14.67□□□□□ -0.06
USP28-209ENST00000540925 FBXL22Q6P050 247 aa14.67□□□□□ -0.06
USP28-209ENST00000540925 MON1BQ7L1V2 547 aa14.67□□□□□ -0.06
USP28-209ENST00000540925 LUZP1Q86V48 1076 aa14.67□□□□□ -0.06
USP28-209ENST00000540925 SLC30A5Q8TAD4 765 aa14.67□□□□□ -0.06
USP28-209ENST00000540925 CYB5D2Q8WUJ1 264 aa14.67□□□□□ -0.06
USP28-209ENST00000540925 IGSF8Q969P0 613 aa14.67□□□□□ -0.06
USP28-209ENST00000540925 RMDN1Q96DB5 314 aa14.67□□□□□ -0.06
USP28-209ENST00000540925 MRGPRX3Q96LB0 322 aa14.67□□□□□ -0.06
USP28-209ENST00000540925 AGPAT1Q99943 283 aa14.67□□□□□ -0.06
USP28-209ENST00000540925 ARRDC1-AS1Q9H2J1 176 aa14.67□□□□□ -0.06
USP28-209ENST00000540925 COX16Q9P0S2 106 aa14.67□□□□□ -0.06
USP28-209ENST00000540925 USP36Q9P275 1121 aaKnown RBP14.67□□□□□ -0.06
USP28-209ENST00000540925 BCCIPQ9P287 314 aaKnown RBP eCLIP14.67□□□□□ -0.06
USP28-209ENST00000540925 SLC12A6Q9UHW9 1150 aa14.67□□□□□ -0.06
USP28-209ENST00000540925 STAP1Q9ULZ2 295 aa14.67□□□□□ -0.06
USP28-209ENST00000540925 IGHV1OR15-9A0A0B4J2B8 117 aa14.66□□□□□ -0.06
USP28-209ENST00000540925 A0A1B0GVM2 712 aa14.66□□□□□ -0.06
USP28-209ENST00000540925 TYW5A2RUC4 315 aaKnown RBP14.66□□□□□ -0.06
USP28-209ENST00000540925 TCAF2A6NFQ2 919 aa14.66□□□□□ -0.06
USP28-209ENST00000540925 C2CD4BA6NLJ0 364 aa14.66□□□□□ -0.06
USP28-209ENST00000540925 F5H5T6 163 aa14.66□□□□□ -0.06
USP28-209ENST00000540925 GOLGA8SH3BPF8 625 aa14.66□□□□□ -0.06
USP28-209ENST00000540925 CAVIN2O95810 425 aa14.66□□□□□ -0.06
USP28-209ENST00000540925 F9P00740 461 aa14.66□□□□□ -0.06
USP28-209ENST00000540925 IGLV3-19P01714 112 aa14.66□□□□□ -0.06
USP28-209ENST00000540925 FERP16591 822 aa14.66□□□□□ -0.06
USP28-209ENST00000540925 MPLP40238 635 aa14.66□□□□□ -0.06
USP28-209ENST00000540925 CSKP41240 450 aa14.66□□□□□ -0.06
USP28-209ENST00000540925 ID4P47928 161 aa14.66□□□□□ -0.06
USP28-209ENST00000540925 SULT1E1P49888 294 aa14.66□□□□□ -0.06
USP28-209ENST00000540925 IRAK1P51617 712 aa14.66□□□□□ -0.06
USP28-209ENST00000540925 ATXN1P54253 815 aaKnown RBP14.66□□□□□ -0.06
USP28-209ENST00000540925 LMNB2Q03252 620 aa14.66□□□□□ -0.06
USP28-209ENST00000540925 BYSLQ13895 437 aaKnown RBP14.66□□□□□ -0.06
USP28-209ENST00000540925 STARD3Q14849 445 aa14.66□□□□□ -0.06
USP28-209ENST00000540925 PITRM1Q5JRX3 1037 aa14.66□□□□□ -0.06
USP28-209ENST00000540925 PEAR1Q5VY43 1037 aaPredicted RBP14.66□□□□□ -0.06
USP28-209ENST00000540925 E4F1Q66K89 784 aaPredicted RBP14.66□□□□□ -0.06
USP28-209ENST00000540925 CXorf57Q6NSI4 855 aaKnown RBP14.66□□□□□ -0.06
USP28-209ENST00000540925 SERPINA13PQ6UXR4 307 aa14.66□□□□□ -0.06
USP28-209ENST00000540925 PRR23CQ6ZRP0 262 aa14.66□□□□□ -0.06
USP28-209ENST00000540925 C14orf80Q86SX3 495 aa14.66□□□□□ -0.06
USP28-209ENST00000540925 CIR1Q86X95 450 aaPredicted RBP14.66□□□□□ -0.06
USP28-209ENST00000540925 CCAR2Q8N163 923 aaKnown RBP14.66□□□□□ -0.06
USP28-209ENST00000540925 CARNMT1Q8N4J0 409 aa14.66□□□□□ -0.06
USP28-209ENST00000540925 KDM1BQ8NB78 822 aa14.66□□□□□ -0.06
USP28-209ENST00000540925 CENPIQ92674 756 aaPredicted RBP14.66□□□□□ -0.06
USP28-209ENST00000540925 ALG14Q96F25 216 aa14.66□□□□□ -0.06
USP28-209ENST00000540925 SPACA7Q96KW9 195 aa14.66□□□□□ -0.06
USP28-209ENST00000540925 C1orf74Q96LT6 269 aa14.66□□□□□ -0.06
USP28-209ENST00000540925 CFAP57Q96MR6 1250 aa14.66□□□□□ -0.06
USP28-209ENST00000540925 C11orf70Q9BRQ4 267 aa14.66□□□□□ -0.06
USP28-209ENST00000540925 CD93Q9NPY3 652 aa14.66□□□□□ -0.06
USP28-209ENST00000540925 DYNC1LI1Q9Y6G9 523 aaKnown RBP14.66□□□□□ -0.06
USP28-209ENST00000540925 RALGAPA1Q6GYQ0 2036 aa14.66□□□□□ -0.06
USP28-209ENST00000540925 NUP205Q92621 2012 aa14.66□□□□□ -0.06
USP28-209ENST00000540925 THADAQ6YHU6 1953 aa14.65□□□□□ -0.06
USP28-209ENST00000540925 IGLV3-10A0A075B6K4 115 aa14.65□□□□□ -0.06
USP28-209ENST00000540925 PRR5-ARHGAP8B1AHC4 643 aa14.65□□□□□ -0.06
USP28-209ENST00000540925 FOXD2O60548 495 aaPredicted RBP14.65□□□□□ -0.06
USP28-209ENST00000540925 ZNF217O75362 1048 aa14.65□□□□□ -0.06
USP28-209ENST00000540925 ASLP04424 464 aa14.65□□□□□ -0.06
USP28-209ENST00000540925 ATP5BP06576 529 aaKnown RBP14.65□□□□□ -0.06
USP28-209ENST00000540925 HLA-EP13747 358 aa14.65□□□□□ -0.06
USP28-209ENST00000540925 PTPN9P43378 593 aa14.65□□□□□ -0.06
USP28-209ENST00000540925 PLK1P53350 603 aa14.65□□□□□ -0.06
USP28-209ENST00000540925 ARHGAP8P85298 464 aa14.65□□□□□ -0.06
USP28-209ENST00000540925 ARID5AQ03989 594 aa14.65□□□□□ -0.06
USP28-209ENST00000540925 C1QBPQ07021 282 aaKnown RBP14.65□□□□□ -0.06
USP28-209ENST00000540925 CDH18Q13634 790 aa14.65□□□□□ -0.06
USP28-209ENST00000540925 PLEKHG6Q3KR16 790 aa14.65□□□□□ -0.06
USP28-209ENST00000540925 FILIP1LQ4L180 1135 aa14.65□□□□□ -0.06
USP28-209ENST00000540925 FIGNQ5HY92 759 aa14.65□□□□□ -0.06
USP28-209ENST00000540925 RABGAP1LQ5R372 815 aa14.65□□□□□ -0.06
USP28-209ENST00000540925 PGBD3Q8N328 593 aa14.65□□□□□ -0.06
USP28-209ENST00000540925 EMC1Q8N766 993 aa14.65□□□□□ -0.06
USP28-209ENST00000540925 OR52K2Q8NGK3 314 aa14.65□□□□□ -0.06
USP28-209ENST00000540925 JOSD2Q8TAC2 188 aa14.65□□□□□ -0.06
USP28-209ENST00000540925 RNF34Q969K3 372 aa14.65□□□□□ -0.06
USP28-209ENST00000540925 ERLEC1Q96DZ1 483 aa14.65□□□□□ -0.06
USP28-209ENST00000540925 EDEM3Q9BZQ6 932 aa14.65□□□□□ -0.06
USP28-209ENST00000540925 TKTL2Q9H0I9 626 aa14.65□□□□□ -0.06
USP28-209ENST00000540925 WDCPQ9H6R7 721 aa14.65□□□□□ -0.06
USP28-209ENST00000540925 METTL5Q9NRN9 209 aaKnown RBP14.65□□□□□ -0.06
USP28-209ENST00000540925 AIPL1Q9NZN9 384 aa14.65□□□□□ -0.06
USP28-209ENST00000540925 KIAA1522Q9P206 1035 aaPredicted RBP14.65□□□□□ -0.06
USP28-209ENST00000540925 USP18Q9UMW8 372 aa14.65□□□□□ -0.06
Retrieved 100 of 20,778 RNA–protein pairs in 18.7 ms