RNA–Protein interactions for RNA: ENST00000540798.5

RTN3-210, Transcript of reticulon 3, humanhuman

TSL 1 (best) BASIC

Gene RTN3, Length 3,124 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-210ENST00000540798 OTOAQ7RTW8 1153 aa14.16□□□□□ -0.14
RTN3-210ENST00000540798 RTN4RL1Q86UN2 441 aaPredicted RBP14.16□□□□□ -0.14
RTN3-210ENST00000540798 EDEM1Q92611 657 aa14.16□□□□□ -0.14
RTN3-210ENST00000540798 TTC17Q96AE7 1141 aa14.16□□□□□ -0.14
RTN3-210ENST00000540798 TRIM62Q9BVG3 475 aa14.16□□□□□ -0.14
RTN3-210ENST00000540798 OSBPL2Q9H1P3 480 aa14.16□□□□□ -0.14
RTN3-210ENST00000540798 UGT1A7Q9HAW7 530 aa14.16□□□□□ -0.14
RTN3-210ENST00000540798 UGT1A10Q9HAW8 530 aa14.16□□□□□ -0.14
RTN3-210ENST00000540798 UGT1A8Q9HAW9 530 aa14.16□□□□□ -0.14
RTN3-210ENST00000540798 ARHGEF38Q9NXL2 777 aa14.16□□□□□ -0.14
RTN3-210ENST00000540798 ARHGEF37A1IGU5 675 aa14.16□□□□□ -0.14
RTN3-210ENST00000540798 TNFRSF10BO14763 440 aa14.16□□□□□ -0.14
RTN3-210ENST00000540798 ACLYP53396 1101 aa14.16□□□□□ -0.14
RTN3-210ENST00000540798 DSC1Q08554 894 aa14.16□□□□□ -0.14
RTN3-210ENST00000540798 LGSNQ5TDP6 509 aa14.16□□□□□ -0.14
RTN3-210ENST00000540798 C10orf82Q8WW14 230 aa14.16□□□□□ -0.14
RTN3-210ENST00000540798 C12orf65Q9H3J6 166 aaKnown RBP14.16□□□□□ -0.14
RTN3-210ENST00000540798 WDCPQ9H6R7 721 aa14.16□□□□□ -0.14
RTN3-210ENST00000540798 MAD1L1Q9Y6D9 718 aa14.16□□□□□ -0.14
RTN3-210ENST00000540798 H0YHG0 523 aa14.15□□□□□ -0.14
RTN3-210ENST00000540798 TMEM189-UBE2V1I3L0A0 370 aa14.15□□□□□ -0.14
RTN3-210ENST00000540798 B4GALT3O60512 393 aa14.15□□□□□ -0.14
RTN3-210ENST00000540798 EOMESO95936 686 aa14.15□□□□□ -0.14
RTN3-210ENST00000540798 SERPINB9P50453 376 aa14.15□□□□□ -0.14
RTN3-210ENST00000540798 FAM189BP81408 668 aa14.15□□□□□ -0.14
RTN3-210ENST00000540798 ZNF449Q6P9G9 518 aa14.15□□□□□ -0.14
RTN3-210ENST00000540798 CTAGE3PQ8IX95 158 aa14.15□□□□□ -0.14
RTN3-210ENST00000540798 KLHDC8BQ8IXV7 354 aa14.15□□□□□ -0.14
RTN3-210ENST00000540798 THEM5Q8N1Q8 247 aa14.15□□□□□ -0.14
RTN3-210ENST00000540798 ZSCAN18Q8TBC5 510 aaPredicted RBP14.15□□□□□ -0.14
RTN3-210ENST00000540798 ZNF398Q8TD17 642 aa14.15□□□□□ -0.14
RTN3-210ENST00000540798 DQX1Q8TE96 717 aaKnown RBP14.15□□□□□ -0.14
RTN3-210ENST00000540798 TKTL2Q9H0I9 626 aa14.15□□□□□ -0.14
RTN3-210ENST00000540798 CEP350Q5VT06 3117 aa14.15□□□□□ -0.14
RTN3-210ENST00000540798 WDR27A2RRH5 827 aa14.15□□□□□ -0.14
RTN3-210ENST00000540798 F8W810 466 aa14.15□□□□□ -0.14
RTN3-210ENST00000540798 CKBP12277 381 aa14.15□□□□□ -0.14
RTN3-210ENST00000540798 PGAM1P18669 254 aa14.15□□□□□ -0.14
RTN3-210ENST00000540798 IBSPP21815 317 aaPredicted RBP14.15□□□□□ -0.14
RTN3-210ENST00000540798 CNTFP26441 200 aa14.15□□□□□ -0.14
RTN3-210ENST00000540798 CYP2C18P33260 490 aa14.15□□□□□ -0.14
RTN3-210ENST00000540798 NCALDP61601 193 aa14.15□□□□□ -0.14
RTN3-210ENST00000540798 NAB1Q13506 487 aa14.15□□□□□ -0.14
RTN3-210ENST00000540798 MBTPS1Q14703 1052 aa14.15□□□□□ -0.14
RTN3-210ENST00000540798 KCTD11Q693B1 232 aa14.15□□□□□ -0.14
RTN3-210ENST00000540798 RNF180Q86T96 592 aa14.15□□□□□ -0.14
RTN3-210ENST00000540798 SLC43A3Q8NBI5 491 aa14.15□□□□□ -0.14
RTN3-210ENST00000540798 CCNYQ8ND76 341 aa14.15□□□□□ -0.14
RTN3-210ENST00000540798 HASPINQ8TF76 798 aa14.15□□□□□ -0.14
RTN3-210ENST00000540798 LINC01599Q8WXQ3 324 aa14.15□□□□□ -0.14
RTN3-210ENST00000540798 NAT9Q9BTE0 207 aa14.15□□□□□ -0.14
RTN3-210ENST00000540798 INPP5FQ9Y2H2 1132 aa14.15□□□□□ -0.14
RTN3-210ENST00000540798 USH1CQ9Y6N9 552 aa14.15□□□□□ -0.14
RTN3-210ENST00000540798 KLF11O14901 512 aa14.15□□□□□ -0.14
RTN3-210ENST00000540798 MTSS1O43312 755 aa14.15□□□□□ -0.14
RTN3-210ENST00000540798 KRT38O76015 456 aa14.15□□□□□ -0.14
RTN3-210ENST00000540798 SP3Q02447 781 aa14.15□□□□□ -0.14
RTN3-210ENST00000540798 ZNF33AQ06730 810 aa14.15□□□□□ -0.14
RTN3-210ENST00000540798 FAM133BQ5BKY9 247 aaKnown RBP14.15□□□□□ -0.14
RTN3-210ENST00000540798 CDHR3Q6ZTQ4 885 aa14.15□□□□□ -0.14
RTN3-210ENST00000540798 PTPRN2Q92932 1015 aa14.15□□□□□ -0.14
RTN3-210ENST00000540798 EPAS1Q99814 870 aa14.15□□□□□ -0.14
RTN3-210ENST00000540798 CEP41Q9BYV8 373 aa14.15□□□□□ -0.14
RTN3-210ENST00000540798 MANSC1Q9H8J5 431 aa14.15□□□□□ -0.14
RTN3-210ENST00000540798 OR12D3Q9UGF7 316 aa14.15□□□□□ -0.14
RTN3-210ENST00000540798 HTTP42858 3142 aa14.14□□□□□ -0.15
RTN3-210ENST00000540798 HOXC13P31276 330 aa14.14□□□□□ -0.15
RTN3-210ENST00000540798 HNRNPH1P31943 449 aaKnown RBP14.14□□□□□ -0.15
RTN3-210ENST00000540798 SKIV2L2P42285 1042 aaKnown RBP14.14□□□□□ -0.15
RTN3-210ENST00000540798 FRG1Q14331 258 aaKnown RBP14.14□□□□□ -0.15
RTN3-210ENST00000540798 SRPK1Q96SB4 655 aaKnown RBP14.14□□□□□ -0.15
RTN3-210ENST00000540798 CFHR5Q9BXR6 569 aa14.14□□□□□ -0.15
RTN3-210ENST00000540798 GGT7Q9UJ14 662 aa14.14□□□□□ -0.15
RTN3-210ENST00000540798 PLLPQ9Y342 182 aa14.14□□□□□ -0.15
RTN3-210ENST00000540798 LRIG2O94898 1065 aa14.14□□□□□ -0.15
RTN3-210ENST00000540798 AP2A1O95782 977 aa14.14□□□□□ -0.15
RTN3-210ENST00000540798 CCNB1P14635 433 aa14.14□□□□□ -0.15
RTN3-210ENST00000540798 MX2P20592 715 aa14.14□□□□□ -0.15
RTN3-210ENST00000540798 MGAT1P26572 445 aa14.14□□□□□ -0.15
RTN3-210ENST00000540798 CD68P34810 354 aaPredicted RBP14.14□□□□□ -0.15
RTN3-210ENST00000540798 GARSP41250 739 aaKnown RBP14.14□□□□□ -0.15
RTN3-210ENST00000540798 TSPY1Q01534 308 aa14.14□□□□□ -0.15
RTN3-210ENST00000540798 IFRD2Q12894 506 aaPredicted RBP14.14□□□□□ -0.15
RTN3-210ENST00000540798 CLLU1OSQ5K130 101 aa14.14□□□□□ -0.15
RTN3-210ENST00000540798 SPDYAQ5MJ70 313 aa14.14□□□□□ -0.15
RTN3-210ENST00000540798 FAM111AQ96PZ2 611 aa14.14□□□□□ -0.15
RTN3-210ENST00000540798 GBA3Q9H227 469 aa14.14□□□□□ -0.15
RTN3-210ENST00000540798 TRHDEQ9UKU6 1024 aa14.14□□□□□ -0.15
RTN3-210ENST00000540798 SNX10Q9Y5X0 201 aa14.14□□□□□ -0.15
RTN3-210ENST00000540798 SHROOM3Q8TF72 1996 aa14.14□□□□□ -0.15
RTN3-210ENST00000540798 VWA8A3KMH1 1905 aa14.14□□□□□ -0.15
RTN3-210ENST00000540798 CFAP73A6NFT4 308 aa14.13□□□□□ -0.15
RTN3-210ENST00000540798 MOXD2PA6NHM9 499 aa14.13□□□□□ -0.15
RTN3-210ENST00000540798 IRAK2O43187 625 aa14.13□□□□□ -0.15
RTN3-210ENST00000540798 DDHD2O94830 711 aa14.13□□□□□ -0.15
RTN3-210ENST00000540798 HTR7P34969 479 aa14.13□□□□□ -0.15
RTN3-210ENST00000540798 SERPINB6P35237 376 aa14.13□□□□□ -0.15
RTN3-210ENST00000540798 CRYMQ14894 314 aa14.13□□□□□ -0.15
RTN3-210ENST00000540798 SEPT7Q16181 437 aaKnown RBP14.13□□□□□ -0.15
RTN3-210ENST00000540798 MANEALQ5VSG8 457 aa14.13□□□□□ -0.15
Retrieved 100 of 20,778 RNA–protein pairs in 21.8 ms