RNA–Protein interactions for RNA: ENST00000519664.1

SYNPO-204, Transcript of synaptopodin, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SYNPO, Length 4,571 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNPO-204ENST00000519664 DNAJB2P25686 324 aa11.96□□□□□ -0.5
SYNPO-204ENST00000519664 CDKN2BP42772 138 aa11.96□□□□□ -0.5
SYNPO-204ENST00000519664 UBAP2LQ14157 1087 aaKnown RBP11.96□□□□□ -0.5
SYNPO-204ENST00000519664 LBX2Q6XYB7 198 aa11.96□□□□□ -0.5
SYNPO-204ENST00000519664 THAP11Q96EK4 314 aa11.96□□□□□ -0.5
SYNPO-204ENST00000519664 SPATA13Q96N96 652 aa11.96□□□□□ -0.5
SYNPO-204ENST00000519664 GPR20Q99678 358 aa11.96□□□□□ -0.5
SYNPO-204ENST00000519664 LPIN3Q9BQK8 851 aa11.96□□□□□ -0.5
SYNPO-204ENST00000519664 RNPEPL1Q9HAU8 725 aa11.96□□□□□ -0.5
SYNPO-204ENST00000519664 ZNF214Q9UL59 606 aaPredicted RBP11.96□□□□□ -0.5
SYNPO-204ENST00000519664 PNMA8BQ9ULN7 279 aaPredicted RBP11.96□□□□□ -0.5
SYNPO-204ENST00000519664 PPP2R3BQ9Y5P8 575 aa11.96□□□□□ -0.5
SYNPO-204ENST00000519664 F8W8V4 182 aa11.96□□□□□ -0.5
SYNPO-204ENST00000519664 DHX15O43143 795 aaKnown RBP11.96□□□□□ -0.5
SYNPO-204ENST00000519664 MGEA5O60502 916 aa11.96□□□□□ -0.5
SYNPO-204ENST00000519664 NR2C2P49116 596 aa11.96□□□□□ -0.5
SYNPO-204ENST00000519664 KCNK10P57789 538 aa11.96□□□□□ -0.5
SYNPO-204ENST00000519664 PMF1Q6P1K2 205 aa11.96□□□□□ -0.5
SYNPO-204ENST00000519664 C16orf87Q6PH81 154 aa11.96□□□□□ -0.5
SYNPO-204ENST00000519664 ECHDC2Q86YB7 292 aa11.96□□□□□ -0.5
SYNPO-204ENST00000519664 MIER2Q8N344 545 aa11.96□□□□□ -0.5
SYNPO-204ENST00000519664 GLIS1Q8NBF1 620 aa11.96□□□□□ -0.5
SYNPO-204ENST00000519664 B3GALNT2Q8NCR0 500 aa11.96□□□□□ -0.5
SYNPO-204ENST00000519664 GTF3C2Q8WUA4 911 aaPredicted RBP11.96□□□□□ -0.5
SYNPO-204ENST00000519664 NMD3Q96D46 503 aaKnown RBP11.96□□□□□ -0.5
SYNPO-204ENST00000519664 CCDC134Q9H6E4 229 aa11.96□□□□□ -0.5
SYNPO-204ENST00000519664 CAB39LQ9H9S4 337 aa11.96□□□□□ -0.5
SYNPO-204ENST00000519664 PCDH18Q9HCL0 1135 aa11.96□□□□□ -0.5
SYNPO-204ENST00000519664 RNF112Q9ULX5 631 aa11.96□□□□□ -0.5
SYNPO-204ENST00000519664 TRPC5OSA6NMA1 111 aa11.95□□□□□ -0.5
SYNPO-204ENST00000519664 A8MX80 341 aa11.95□□□□□ -0.5
SYNPO-204ENST00000519664 MYO1GB0I1T2 1018 aa11.95□□□□□ -0.5
SYNPO-204ENST00000519664 FBXO21O94952 628 aa11.95□□□□□ -0.5
SYNPO-204ENST00000519664 HIST1H2AGP0C0S8 130 aaPredicted RBP11.95□□□□□ -0.5
SYNPO-204ENST00000519664 PGAM1P18669 254 aa11.95□□□□□ -0.5
SYNPO-204ENST00000519664 NFKB1P19838 968 aa11.95□□□□□ -0.5
SYNPO-204ENST00000519664 HIST1H2ADP20671 130 aa11.95□□□□□ -0.5
SYNPO-204ENST00000519664 TMED10P49755 219 aaKnown RBP11.95□□□□□ -0.5
SYNPO-204ENST00000519664 RPS6KA3P51812 740 aa11.95□□□□□ -0.5
SYNPO-204ENST00000519664 ATXN1P54253 815 aaKnown RBP11.95□□□□□ -0.5
SYNPO-204ENST00000519664 GDF10P55107 478 aa11.95□□□□□ -0.5
SYNPO-204ENST00000519664 SLC34A1Q06495 639 aa11.95□□□□□ -0.5
SYNPO-204ENST00000519664 USP4Q13107 963 aa11.95□□□□□ -0.5
SYNPO-204ENST00000519664 CTBP1Q13363 440 aa11.95□□□□□ -0.5
SYNPO-204ENST00000519664 PCDH20Q8N6Y1 951 aaKnown RBP11.95□□□□□ -0.5
SYNPO-204ENST00000519664 ATP6V0D2Q8N8Y2 350 aa11.95□□□□□ -0.5
SYNPO-204ENST00000519664 SNRNP27Q8WVK2 155 aaKnown RBP11.95□□□□□ -0.5
SYNPO-204ENST00000519664 HIST1H2AHQ96KK5 128 aa11.95□□□□□ -0.5
SYNPO-204ENST00000519664 HIST1H2AJQ99878 128 aa11.95□□□□□ -0.5
SYNPO-204ENST00000519664 DDX50Q9BQ39 737 aaKnown RBP11.95□□□□□ -0.5
SYNPO-204ENST00000519664 H2AFJQ9BTM1 129 aa11.95□□□□□ -0.5
SYNPO-204ENST00000519664 ATP6AP2A0A1C7CYW4 349 aa11.95□□□□□ -0.5
SYNPO-204ENST00000519664 E7ENQ6 273 aa11.95□□□□□ -0.5
SYNPO-204ENST00000519664 EDF1O60869 148 aaKnown RBP11.95□□□□□ -0.5
SYNPO-204ENST00000519664 ATP6AP2O75787 350 aa11.95□□□□□ -0.5
SYNPO-204ENST00000519664 DDHD2O94830 711 aa11.95□□□□□ -0.5
SYNPO-204ENST00000519664 APOA4P06727 396 aa11.95□□□□□ -0.5
SYNPO-204ENST00000519664 NOS2P35228 1153 aa11.95□□□□□ -0.5
SYNPO-204ENST00000519664 PSEN2P49810 448 aa11.95□□□□□ -0.5
SYNPO-204ENST00000519664 MAXP61244 160 aa11.95□□□□□ -0.5
SYNPO-204ENST00000519664 TMC7Q7Z402 723 aa11.95□□□□□ -0.5
SYNPO-204ENST00000519664 VPS50Q96JG6 964 aa11.95□□□□□ -0.5
SYNPO-204ENST00000519664 ADAM2Q99965 735 aa11.95□□□□□ -0.5
SYNPO-204ENST00000519664 UBE2OQ9C0C9 1292 aaKnown RBP11.95□□□□□ -0.5
SYNPO-204ENST00000519664 NDUFA13Q9P0J0 144 aa11.95□□□□□ -0.5
SYNPO-204ENST00000519664 C2CD2Q9Y426 696 aa11.95□□□□□ -0.5
SYNPO-204ENST00000519664 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP11.95□□□□□ -0.5
SYNPO-204ENST00000519664 FKBP9O95302 570 aa11.95□□□□□ -0.5
SYNPO-204ENST00000519664 TRIM16O95361 564 aa11.95□□□□□ -0.5
SYNPO-204ENST00000519664 CNTFP26441 200 aa11.95□□□□□ -0.5
SYNPO-204ENST00000519664 OR1E1P30953 314 aa11.95□□□□□ -0.5
SYNPO-204ENST00000519664 CD151P48509 253 aa11.95□□□□□ -0.5
SYNPO-204ENST00000519664 ALDH7A1P49419 539 aaKnown RBP11.95□□□□□ -0.5
SYNPO-204ENST00000519664 CACNA2D1P54289 1103 aa11.95□□□□□ -0.5
SYNPO-204ENST00000519664 SP2Q02086 613 aa11.95□□□□□ -0.5
SYNPO-204ENST00000519664 ZNF177Q13360 481 aaPredicted RBP11.95□□□□□ -0.5
SYNPO-204ENST00000519664 TRMT5Q32P41 509 aaKnown RBP11.95□□□□□ -0.5
SYNPO-204ENST00000519664 FKBP9P1Q75LS8 142 aa11.95□□□□□ -0.5
SYNPO-204ENST00000519664 ZNF786Q8N393 782 aa11.95□□□□□ -0.5
SYNPO-204ENST00000519664 KYQ8NBH2 561 aa11.95□□□□□ -0.5
SYNPO-204ENST00000519664 PRKAG2Q9UGJ0 569 aa11.95□□□□□ -0.5
SYNPO-204ENST00000519664 FAM50BQ9Y247 325 aa11.95□□□□□ -0.5
SYNPO-204ENST00000519664 STXBP5LQ9Y2K9 1186 aa11.95□□□□□ -0.5
SYNPO-204ENST00000519664 LIN7AO14910 233 aaPredicted RBP11.94□□□□□ -0.5
SYNPO-204ENST00000519664 CHADO15335 359 aa11.94□□□□□ -0.5
SYNPO-204ENST00000519664 NPR3P17342 541 aa11.94□□□□□ -0.5
SYNPO-204ENST00000519664 CDH18Q13634 790 aa11.94□□□□□ -0.5
SYNPO-204ENST00000519664 LRRC74BQ6ZQY2 392 aa11.94□□□□□ -0.5
SYNPO-204ENST00000519664 PYROXD2Q8N2H3 581 aa11.94□□□□□ -0.5
SYNPO-204ENST00000519664 ANKRD52Q8NB46 1076 aa11.94□□□□□ -0.5
SYNPO-204ENST00000519664 GPR152Q8TDT2 470 aa11.94□□□□□ -0.5
SYNPO-204ENST00000519664 SH3KBP1Q96B97 665 aa11.94□□□□□ -0.5
SYNPO-204ENST00000519664 EBNA1BP2Q99848 306 aaKnown RBP11.94□□□□□ -0.5
SYNPO-204ENST00000519664 TRMT6Q9UJA5 497 aaKnown RBP11.94□□□□□ -0.5
SYNPO-204ENST00000519664 TSC22D4Q9Y3Q8 395 aa11.94□□□□□ -0.5
SYNPO-204ENST00000519664 SNCAIPQ9Y6H5 919 aa11.94□□□□□ -0.5
SYNPO-204ENST00000519664 F5H5T6 163 aa11.94□□□□□ -0.5
SYNPO-204ENST00000519664 PEX1O43933 1283 aa11.94□□□□□ -0.5
SYNPO-204ENST00000519664 PTDSS1P48651 473 aaKnown RBP11.94□□□□□ -0.5
SYNPO-204ENST00000519664 MRPS22P82650 360 aaKnown RBP11.94□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 51.3 ms