RNA–Protein interactions for RNA: ENST00000514096.5

LIMCH1-219, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 3,543 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-219ENST00000514096 FANCCQ00597 558 aa8.16□□□□□ -1.1
LIMCH1-219ENST00000514096 PRAMEF14Q5SWL7 426 aa8.16□□□□□ -1.1
LIMCH1-219ENST00000514096 DCUN1D2Q6PH85 259 aa8.16□□□□□ -1.1
LIMCH1-219ENST00000514096 VSTM1Q6UX27 236 aa8.16□□□□□ -1.1
LIMCH1-219ENST00000514096 KIAA1324Q6UXG2 1013 aaKnown RBP8.16□□□□□ -1.1
LIMCH1-219ENST00000514096 MTSS1LQ765P7 747 aa8.16□□□□□ -1.1
LIMCH1-219ENST00000514096 ERICH1Q86X53 443 aa8.16□□□□□ -1.1
LIMCH1-219ENST00000514096 CCDC170Q8IYT3 715 aa8.16□□□□□ -1.1
LIMCH1-219ENST00000514096 RYBPQ8N488 228 aaPredicted RBP8.16□□□□□ -1.1
LIMCH1-219ENST00000514096 RPLP0P6Q8NHW5 317 aa8.16□□□□□ -1.1
LIMCH1-219ENST00000514096 SPATA20Q8TB22 786 aa8.16□□□□□ -1.1
LIMCH1-219ENST00000514096 MKNK1Q9BUB5 465 aa8.16□□□□□ -1.1
LIMCH1-219ENST00000514096 OSBPL1AQ9BXW6 950 aa8.16□□□□□ -1.1
LIMCH1-219ENST00000514096 IRF2BPLQ9H1B7 796 aa8.16□□□□□ -1.1
LIMCH1-219ENST00000514096 MIR1-1HGQ9H1L0 117 aa8.16□□□□□ -1.1
LIMCH1-219ENST00000514096 RSPH9Q9H1X1 276 aaPredicted RBP8.16□□□□□ -1.1
LIMCH1-219ENST00000514096 HOMER3Q9NSC5 361 aa8.16□□□□□ -1.1
LIMCH1-219ENST00000514096 SCHIP1Q9P0W5 487 aaPredicted RBP8.16□□□□□ -1.1
LIMCH1-219ENST00000514096 SLC16A3O15427 465 aaKnown RBP8.15□□□□□ -1.1
LIMCH1-219ENST00000514096 DIAPH2O60879 1101 aa8.15□□□□□ -1.1
LIMCH1-219ENST00000514096 F11P03951 625 aa8.15□□□□□ -1.1
LIMCH1-219ENST00000514096 CYP11A1P05108 521 aa8.15□□□□□ -1.1
LIMCH1-219ENST00000514096 RPS24P62847 133 aaKnown RBP8.15□□□□□ -1.1
LIMCH1-219ENST00000514096 RUNX3Q13761 415 aa8.15□□□□□ -1.1
LIMCH1-219ENST00000514096 RAB6CQ53S08 254 aa8.15□□□□□ -1.1
LIMCH1-219ENST00000514096 RAP1GAP2Q684P5 730 aa8.15□□□□□ -1.1
LIMCH1-219ENST00000514096 TMEM150AQ86TG1 271 aa8.15□□□□□ -1.1
LIMCH1-219ENST00000514096 LONP2Q86WA8 852 aa8.15□□□□□ -1.1
LIMCH1-219ENST00000514096 CHSY1Q86X52 802 aa8.15□□□□□ -1.1
LIMCH1-219ENST00000514096 TMC8Q8IU68 726 aa8.15□□□□□ -1.1
LIMCH1-219ENST00000514096 CPXM1Q96SM3 734 aa8.15□□□□□ -1.1
LIMCH1-219ENST00000514096 ACOX2Q99424 681 aa8.15□□□□□ -1.1
LIMCH1-219ENST00000514096 DUSP16Q9BY84 665 aa8.15□□□□□ -1.1
LIMCH1-219ENST00000514096 RAB6CQ9H0N0 254 aa8.15□□□□□ -1.1
LIMCH1-219ENST00000514096 UXTQ9UBK9 157 aaPredicted RBP8.15□□□□□ -1.1
LIMCH1-219ENST00000514096 LSM7Q9UK45 103 aaKnown RBP8.15□□□□□ -1.1
LIMCH1-219ENST00000514096 CARD8Q9Y2G2 431 aa8.15□□□□□ -1.1
LIMCH1-219ENST00000514096 HYOU1Q9Y4L1 999 aa8.15□□□□□ -1.1
LIMCH1-219ENST00000514096 KIAA1671Q9BY89 1806 aa8.15□□□□□ -1.1
LIMCH1-219ENST00000514096 CCDC160A6NGH7 325 aa8.15□□□□□ -1.1
LIMCH1-219ENST00000514096 RTN2O75298 545 aa8.15□□□□□ -1.1
LIMCH1-219ENST00000514096 SRFP11831 508 aa8.15□□□□□ -1.1
LIMCH1-219ENST00000514096 GLULP15104 373 aa8.15□□□□□ -1.1
LIMCH1-219ENST00000514096 FOSL1P15407 271 aa8.15□□□□□ -1.1
LIMCH1-219ENST00000514096 TNFAIP3P21580 790 aa8.15□□□□□ -1.1
LIMCH1-219ENST00000514096 GALK1P51570 392 aa8.15□□□□□ -1.1
LIMCH1-219ENST00000514096 YWHAEP62258 255 aaKnown RBP8.15□□□□□ -1.1
LIMCH1-219ENST00000514096 KCNMA1Q12791 1236 aa8.15□□□□□ -1.1
LIMCH1-219ENST00000514096 MLF2Q15773 248 aaPredicted RBP8.15□□□□□ -1.1
LIMCH1-219ENST00000514096 CFAP221Q4G0U5 840 aa8.15□□□□□ -1.1
LIMCH1-219ENST00000514096 ZNF852Q6ZMS4 543 aa8.15□□□□□ -1.1
LIMCH1-219ENST00000514096 TOGARAM2Q6ZUX3 1019 aa8.15□□□□□ -1.1
LIMCH1-219ENST00000514096 C12orf56Q8IXR9 622 aa8.15□□□□□ -1.1
LIMCH1-219ENST00000514096 CELF5Q8N6W0 485 aaKnown RBP8.15□□□□□ -1.1
LIMCH1-219ENST00000514096 STAMBPL1Q96FJ0 436 aa8.15□□□□□ -1.1
LIMCH1-219ENST00000514096 XPO4Q9C0E2 1151 aaKnown RBP8.15□□□□□ -1.1
LIMCH1-219ENST00000514096 GPATCH2LQ9NWQ4 482 aa8.15□□□□□ -1.1
LIMCH1-219ENST00000514096 IGSF9Q9P2J2 1179 aa8.15□□□□□ -1.1
LIMCH1-219ENST00000514096 VANGL2Q9ULK5 521 aa8.15□□□□□ -1.1
LIMCH1-219ENST00000514096 TFR2Q9UP52 801 aa8.15□□□□□ -1.1
LIMCH1-219ENST00000514096 SPECC1L-ADORA2AF8WAN1 911 aa8.15□□□□□ -1.11
LIMCH1-219ENST00000514096 M0QYT0 321 aa8.15□□□□□ -1.11
LIMCH1-219ENST00000514096 O00370 1275 aa8.15□□□□□ -1.11
LIMCH1-219ENST00000514096 CPP00450 1065 aa8.15□□□□□ -1.11
LIMCH1-219ENST00000514096 PLEKP08567 350 aaPredicted RBP8.15□□□□□ -1.11
LIMCH1-219ENST00000514096 ATXN8OSP0DMR3 200 aa8.15□□□□□ -1.11
LIMCH1-219ENST00000514096 TFE3P19532 575 aaPredicted RBP8.15□□□□□ -1.11
LIMCH1-219ENST00000514096 TBXAS1P24557 533 aaPredicted RBP8.15□□□□□ -1.11
LIMCH1-219ENST00000514096 ATP1A2P50993 1020 aa8.15□□□□□ -1.11
LIMCH1-219ENST00000514096 BCAT1P54687 386 aa8.15□□□□□ -1.11
LIMCH1-219ENST00000514096 BST2Q10589 180 aaKnown RBP8.15□□□□□ -1.11
LIMCH1-219ENST00000514096 MTAPQ13126 283 aa8.15□□□□□ -1.11
LIMCH1-219ENST00000514096 LBRQ14739 615 aaKnown RBP8.15□□□□□ -1.11
LIMCH1-219ENST00000514096 C15orf59Q2T9L4 293 aaPredicted RBP8.15□□□□□ -1.11
LIMCH1-219ENST00000514096 PPP1R15BQ5SWA1 713 aa8.15□□□□□ -1.11
LIMCH1-219ENST00000514096 C10orf76Q5T2E6 689 aa8.15□□□□□ -1.11
LIMCH1-219ENST00000514096 ALKBH2Q6NS38 261 aa8.15□□□□□ -1.11
LIMCH1-219ENST00000514096 HIBCHQ6NVY1 386 aaPredicted RBP8.15□□□□□ -1.11
LIMCH1-219ENST00000514096 RGL4Q8IZJ4 473 aa8.15□□□□□ -1.11
LIMCH1-219ENST00000514096 DEFB106AQ8N104 65 aa8.15□□□□□ -1.11
LIMCH1-219ENST00000514096 ALLCQ8N6M5 410 aa8.15□□□□□ -1.11
LIMCH1-219ENST00000514096 SIKE1Q9BRV8 207 aa8.15□□□□□ -1.11
LIMCH1-219ENST00000514096 KLHL11Q9NVR0 708 aa8.15□□□□□ -1.11
LIMCH1-219ENST00000514096 ADAMTS1Q9UHI8 967 aa8.15□□□□□ -1.11
LIMCH1-219ENST00000514096 LOC730098B7Z3J9 87 aa8.14□□□□□ -1.11
LIMCH1-219ENST00000514096 AHCYL1O43865 530 aa8.14□□□□□ -1.11
LIMCH1-219ENST00000514096 EGFP01133 1207 aa8.14□□□□□ -1.11
LIMCH1-219ENST00000514096 MAOBP27338 520 aa8.14□□□□□ -1.11
LIMCH1-219ENST00000514096 STAT1P42224 750 aa8.14□□□□□ -1.11
LIMCH1-219ENST00000514096 ARHGAP25P42331 645 aa8.14□□□□□ -1.11
LIMCH1-219ENST00000514096 HARS2P49590 506 aaKnown RBP8.14□□□□□ -1.11
LIMCH1-219ENST00000514096 ITPRIPL2Q3MIP1 535 aa8.14□□□□□ -1.11
LIMCH1-219ENST00000514096 PPP6R3Q5H9R7 873 aaPredicted RBP8.14□□□□□ -1.11
LIMCH1-219ENST00000514096 SH3PXD2AQ5TCZ1 1133 aa8.14□□□□□ -1.11
LIMCH1-219ENST00000514096 FAM171BQ6P995 826 aa8.14□□□□□ -1.11
LIMCH1-219ENST00000514096 B4GALNT4Q76KP1 1039 aa8.14□□□□□ -1.11
LIMCH1-219ENST00000514096 MON1AQ86VX9 555 aa8.14□□□□□ -1.11
LIMCH1-219ENST00000514096 TXNDC5Q8NBS9 432 aaKnown RBP8.14□□□□□ -1.11
LIMCH1-219ENST00000514096 MAIP1Q8WWC4 291 aa8.14□□□□□ -1.11
LIMCH1-219ENST00000514096 BTBD6Q96KE9 485 aa8.14□□□□□ -1.11
Retrieved 100 of 20,778 RNA–protein pairs in 39 ms