RNA–Protein interactions for RNA: ENST00000513960.5

VCAN-210, Transcript of versican, humanhuman

TSL 1 (best)

Gene VCAN, Length 3,973 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCAN-210ENST00000513960 CEP41Q9BYV8 373 aa9.89□□□□□ -0.83
VCAN-210ENST00000513960 CDT1Q9H211 546 aa9.89□□□□□ -0.83
VCAN-210ENST00000513960 LHX5Q9H2C1 402 aa9.89□□□□□ -0.83
VCAN-210ENST00000513960 NRDE2Q9H7Z3 1164 aa9.89□□□□□ -0.83
VCAN-210ENST00000513960 SSX2IPQ9Y2D8 614 aa9.89□□□□□ -0.83
VCAN-210ENST00000513960 SNX13Q9Y5W8 968 aa9.89□□□□□ -0.83
VCAN-210ENST00000513960 ITGB3P05106 788 aa9.89□□□□□ -0.83
VCAN-210ENST00000513960 RALBP11234 206 aa9.89□□□□□ -0.83
VCAN-210ENST00000513960 IL1R2P27930 398 aa9.89□□□□□ -0.83
VCAN-210ENST00000513960 RBL1P28749 1068 aa9.89□□□□□ -0.83
VCAN-210ENST00000513960 ETFBP38117 255 aa9.89□□□□□ -0.83
VCAN-210ENST00000513960 PHKA2P46019 1235 aa9.89□□□□□ -0.83
VCAN-210ENST00000513960 CDH15P55291 814 aa9.89□□□□□ -0.83
VCAN-210ENST00000513960 SFSWAPQ12872 951 aaKnown RBP9.89□□□□□ -0.83
VCAN-210ENST00000513960 BNC2Q6ZN30 1099 aaPredicted RBP9.89□□□□□ -0.83
VCAN-210ENST00000513960 ZNF786Q8N393 782 aa9.89□□□□□ -0.83
VCAN-210ENST00000513960 ZNF276Q8N554 614 aa9.89□□□□□ -0.83
VCAN-210ENST00000513960 SLC35B2Q8TB61 432 aa9.89□□□□□ -0.83
VCAN-210ENST00000513960 HEXIM2Q96MH2 286 aaKnown RBP9.89□□□□□ -0.83
VCAN-210ENST00000513960 TSNARE1Q96NA8 513 aa9.89□□□□□ -0.83
VCAN-210ENST00000513960 PPP1R16BQ96T49 567 aa9.89□□□□□ -0.83
VCAN-210ENST00000513960 UNKQ9C0B0 810 aaKnown RBP9.89□□□□□ -0.83
VCAN-210ENST00000513960 FZD8Q9H461 694 aa9.89□□□□□ -0.83
VCAN-210ENST00000513960 WDR55Q9H6Y2 383 aaPredicted RBP9.89□□□□□ -0.83
VCAN-210ENST00000513960 PRMT7Q9NVM4 692 aaPredicted RBP9.89□□□□□ -0.83
VCAN-210ENST00000513960 RSL24D1Q9UHA3 163 aaKnown RBP9.89□□□□□ -0.83
VCAN-210ENST00000513960 BCAP29Q9UHQ4 241 aa9.89□□□□□ -0.83
VCAN-210ENST00000513960 SYNJ2BP-COX16A0A087WUM0 186 aa9.89□□□□□ -0.83
VCAN-210ENST00000513960 IGKV6-21A0A0C4DH24 114 aa9.89□□□□□ -0.83
VCAN-210ENST00000513960 M0QYV0 167 aa9.89□□□□□ -0.83
VCAN-210ENST00000513960 TPP1O14773 563 aa9.89□□□□□ -0.83
VCAN-210ENST00000513960 VILLO15195 856 aa9.89□□□□□ -0.83
VCAN-210ENST00000513960 LRCH4O75427 683 aa9.89□□□□□ -0.83
VCAN-210ENST00000513960 TFAP2AP05549 437 aa9.89□□□□□ -0.83
VCAN-210ENST00000513960 MAGEA8P43361 318 aa9.89□□□□□ -0.83
VCAN-210ENST00000513960 PHEXP78562 749 aa9.89□□□□□ -0.83
VCAN-210ENST00000513960 PTPN11Q06124 597 aaPredicted RBP9.89□□□□□ -0.83
VCAN-210ENST00000513960 WASHC5Q12768 1159 aa9.89□□□□□ -0.83
VCAN-210ENST00000513960 PPM1JQ5JR12 505 aa9.89□□□□□ -0.83
VCAN-210ENST00000513960 PPM1LQ5SGD2 360 aa9.89□□□□□ -0.83
VCAN-210ENST00000513960 KLHL35Q6PF15 583 aa9.89□□□□□ -0.83
VCAN-210ENST00000513960 UGT2A3Q6UWM9 527 aa9.89□□□□□ -0.83
VCAN-210ENST00000513960 ANKRD23Q86SG2 305 aa9.89□□□□□ -0.83
VCAN-210ENST00000513960 DDI1Q8WTU0 396 aa9.89□□□□□ -0.83
VCAN-210ENST00000513960 COPS5Q92905 334 aa9.89□□□□□ -0.83
VCAN-210ENST00000513960 MOCOSQ96EN8 888 aa9.89□□□□□ -0.83
VCAN-210ENST00000513960 PRICKLE1Q96MT3 831 aaPredicted RBP9.89□□□□□ -0.83
VCAN-210ENST00000513960 FRMD8P1Q9BZ68 369 aaPredicted RBP9.89□□□□□ -0.83
VCAN-210ENST00000513960 UBAP1Q9NZ09 502 aa9.89□□□□□ -0.83
VCAN-210ENST00000513960 COX16Q9P0S2 106 aa9.89□□□□□ -0.83
VCAN-210ENST00000513960 CLEC11AQ9Y240 323 aa9.89□□□□□ -0.83
VCAN-210ENST00000513960 TNFSF13BQ9Y275 285 aa9.89□□□□□ -0.83
VCAN-210ENST00000513960 EFR3BQ9Y2G0 817 aa9.89□□□□□ -0.83
VCAN-210ENST00000513960 FARP1Q9Y4F1 1045 aaPredicted RBP9.89□□□□□ -0.83
VCAN-210ENST00000513960 NR2E3Q9Y5X4 410 aa9.89□□□□□ -0.83
VCAN-210ENST00000513960 A0A1B0GTW7 788 aa9.88□□□□□ -0.83
VCAN-210ENST00000513960 APOEP02649 317 aa9.88□□□□□ -0.83
VCAN-210ENST00000513960 ENTPD1P49961 510 aa9.88□□□□□ -0.83
VCAN-210ENST00000513960 YWHAZP63104 245 aaKnown RBP9.88□□□□□ -0.83
VCAN-210ENST00000513960 TNFAIP2Q03169 654 aa9.88□□□□□ -0.83
VCAN-210ENST00000513960 TTLL4Q14679 1199 aa9.88□□□□□ -0.83
VCAN-210ENST00000513960 CYP2R1Q6VVX0 501 aa9.88□□□□□ -0.83
VCAN-210ENST00000513960 KYAT3Q6YP21 454 aaKnown RBP9.88□□□□□ -0.83
VCAN-210ENST00000513960 RNF111Q6ZNA4 994 aa9.88□□□□□ -0.83
VCAN-210ENST00000513960 MYO1HQ8N1T3 1032 aa9.88□□□□□ -0.83
VCAN-210ENST00000513960 METTL25Q8N6Q8 603 aa9.88□□□□□ -0.83
VCAN-210ENST00000513960 TMIGD2Q96BF3 282 aa9.88□□□□□ -0.83
VCAN-210ENST00000513960 ZNF358Q9NW07 568 aa9.88□□□□□ -0.83
VCAN-210ENST00000513960 PSMD13Q9UNM6 376 aa9.88□□□□□ -0.83
VCAN-210ENST00000513960 AKT3Q9Y243 479 aa9.88□□□□□ -0.83
VCAN-210ENST00000513960 STX16-NPEPL1H3BU86 382 aa9.88□□□□□ -0.83
VCAN-210ENST00000513960 SPAG6O75602 509 aa9.88□□□□□ -0.83
VCAN-210ENST00000513960 NFICP08651 508 aa9.88□□□□□ -0.83
VCAN-210ENST00000513960 PDGFRBP09619 1106 aa9.88□□□□□ -0.83
VCAN-210ENST00000513960 STAG3L1P0CL83 205 aa9.88□□□□□ -0.83
VCAN-210ENST00000513960 MCF2P10911 925 aa9.88□□□□□ -0.83
VCAN-210ENST00000513960 MIPP30301 263 aa9.88□□□□□ -0.83
VCAN-210ENST00000513960 MRPS5P82675 430 aaKnown RBP9.88□□□□□ -0.83
VCAN-210ENST00000513960 SLC18A2Q05940 514 aa9.88□□□□□ -0.83
VCAN-210ENST00000513960 FNIP1Q8TF40 1166 aa9.88□□□□□ -0.83
VCAN-210ENST00000513960 LZICQ8WZA0 190 aa9.88□□□□□ -0.83
VCAN-210ENST00000513960 CPXM1Q96SM3 734 aa9.88□□□□□ -0.83
VCAN-210ENST00000513960 TBC1D23Q9NUY8 699 aa9.88□□□□□ -0.83
VCAN-210ENST00000513960 ASNSD1Q9NWL6 643 aa9.88□□□□□ -0.83
VCAN-210ENST00000513960 ERAP1Q9NZ08 941 aa9.88□□□□□ -0.83
VCAN-210ENST00000513960 SELENONQ9NZV5 590 aa9.88□□□□□ -0.83
VCAN-210ENST00000513960 EPS15L1Q9UBC2 864 aa9.88□□□□□ -0.83
VCAN-210ENST00000513960 ZNF232Q9UNY5 417 aa9.88□□□□□ -0.83
VCAN-210ENST00000513960 TSC22D4Q9Y3Q8 395 aa9.88□□□□□ -0.83
VCAN-210ENST00000513960 LACTBL1A8MY62 500 aa9.88□□□□□ -0.83
VCAN-210ENST00000513960 ZBTB42B2RXF5 422 aa9.88□□□□□ -0.83
VCAN-210ENST00000513960 AMHP03971 560 aa9.88□□□□□ -0.83
VCAN-210ENST00000513960 PROZP22891 400 aa9.88□□□□□ -0.83
VCAN-210ENST00000513960 TMED10P49755 219 aaKnown RBP9.88□□□□□ -0.83
VCAN-210ENST00000513960 NR1H2P55055 460 aa9.88□□□□□ -0.83
VCAN-210ENST00000513960 BBS12Q6ZW61 710 aa9.88□□□□□ -0.83
VCAN-210ENST00000513960 ERO1BQ86YB8 467 aa9.88□□□□□ -0.83
VCAN-210ENST00000513960 TMEM192Q8IY95 271 aa9.88□□□□□ -0.83
VCAN-210ENST00000513960 CCNYL1Q8N7R7 359 aa9.88□□□□□ -0.83
VCAN-210ENST00000513960 C1orf127Q8N9H9 656 aa9.88□□□□□ -0.83
Retrieved 100 of 20,778 RNA–protein pairs in 23.8 ms