RNA–Protein interactions for RNA: ENST00000513578.5

RNF4-220, Transcript of ring finger protein 4, humanhuman

TSL 4

Gene RNF4, Length 545 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4-220ENST00000513578 PGFP49763 221 aa8.61□□□□□ -1.03
RNF4-220ENST00000513578 SLC18A1P54219 525 aa8.61□□□□□ -1.03
RNF4-220ENST00000513578 TBX4P57082 545 aa8.61□□□□□ -1.03
RNF4-220ENST00000513578 USP46P62068 366 aa8.61□□□□□ -1.03
RNF4-220ENST00000513578 DMTNQ08495 405 aa8.61□□□□□ -1.03
RNF4-220ENST00000513578 WASHC5Q12768 1159 aa8.61□□□□□ -1.03
RNF4-220ENST00000513578 FASTKD3Q14CZ7 662 aaKnown RBP8.61□□□□□ -1.03
RNF4-220ENST00000513578 PSMD5Q16401 504 aa8.61□□□□□ -1.03
RNF4-220ENST00000513578 LONRF1Q17RB8 773 aa8.61□□□□□ -1.03
RNF4-220ENST00000513578 LRRC26Q2I0M4 334 aa8.61□□□□□ -1.03
RNF4-220ENST00000513578 MSS51Q4VC12 460 aa8.61□□□□□ -1.03
RNF4-220ENST00000513578 DNAJC21Q5F1R6 531 aaKnown RBP8.61□□□□□ -1.03
RNF4-220ENST00000513578 KLHDC10Q6PID8 442 aa8.61□□□□□ -1.03
RNF4-220ENST00000513578 ARHGEF18Q6ZSZ5 1173 aa8.61□□□□□ -1.03
RNF4-220ENST00000513578 TAS1R1Q7RTX1 841 aa8.61□□□□□ -1.03
RNF4-220ENST00000513578 NECAB2Q7Z6G3 386 aa8.61□□□□□ -1.03
RNF4-220ENST00000513578 TADA2BQ86TJ2 420 aa8.61□□□□□ -1.03
RNF4-220ENST00000513578 DDX53Q86TM3 631 aaKnown RBP8.61□□□□□ -1.03
RNF4-220ENST00000513578 CAND1Q86VP6 1230 aaKnown RBP8.61□□□□□ -1.03
RNF4-220ENST00000513578 CCNJLQ8IV13 435 aa8.61□□□□□ -1.03
RNF4-220ENST00000513578 CCDC13Q8IYE1 715 aa8.61□□□□□ -1.03
RNF4-220ENST00000513578 ZNF683Q8IZ20 524 aa8.61□□□□□ -1.03
RNF4-220ENST00000513578 TMEM199Q8N511 208 aa8.61□□□□□ -1.03
RNF4-220ENST00000513578 CCDC110Q8TBZ0 833 aa8.61□□□□□ -1.03
RNF4-220ENST00000513578 MAML1Q92585 1016 aa8.61□□□□□ -1.03
RNF4-220ENST00000513578 RNF34Q969K3 372 aa8.61□□□□□ -1.03
RNF4-220ENST00000513578 TBC1D31Q96DN5 1066 aa8.61□□□□□ -1.03
RNF4-220ENST00000513578 PAWRQ96IZ0 340 aaKnown RBP8.61□□□□□ -1.03
RNF4-220ENST00000513578 MYRFLQ96LU7 910 aa8.61□□□□□ -1.03
RNF4-220ENST00000513578 ZNF558Q96NG5 402 aa8.61□□□□□ -1.03
RNF4-220ENST00000513578 LGMNQ99538 433 aa8.61□□□□□ -1.03
RNF4-220ENST00000513578 WDR83Q9BRX9 315 aaKnown RBP8.61□□□□□ -1.03
RNF4-220ENST00000513578 VN1R3Q9BXE9 311 aa8.61□□□□□ -1.03
RNF4-220ENST00000513578 CRISPLD1Q9H336 500 aa8.61□□□□□ -1.03
RNF4-220ENST00000513578 CENPHQ9H3R5 247 aa8.61□□□□□ -1.03
RNF4-220ENST00000513578 ACSS3Q9H6R3 686 aa8.61□□□□□ -1.03
RNF4-220ENST00000513578 DNAJC17Q9NVM6 304 aaKnown RBP8.61□□□□□ -1.03
RNF4-220ENST00000513578 SENP1Q9P0U3 644 aa8.61□□□□□ -1.03
RNF4-220ENST00000513578 GMIPQ9P107 970 aa8.61□□□□□ -1.03
RNF4-220ENST00000513578 BCCIPQ9P287 314 aaKnown RBP eCLIP8.61□□□□□ -1.03
RNF4-220ENST00000513578 HCSTQ9UBK5 93 aa8.61□□□□□ -1.03
RNF4-220ENST00000513578 RABGEF1Q9UJ41 708 aa8.61□□□□□ -1.03
RNF4-220ENST00000513578 HBS1LQ9Y450 684 aaKnown RBP8.61□□□□□ -1.03
RNF4-220ENST00000513578 MFHAS1Q9Y4C4 1052 aa8.61□□□□□ -1.03
RNF4-220ENST00000513578 ALPK3Q96L96 1907 aa8.6□□□□□ -1.03
RNF4-220ENST00000513578 IGLV3-10A0A075B6K4 115 aa8.6□□□□□ -1.03
RNF4-220ENST00000513578 EXOC1LA0A1B0GW35 172 aa8.6□□□□□ -1.03
RNF4-220ENST00000513578 TLDC2A0PJX2 215 aa8.6□□□□□ -1.03
RNF4-220ENST00000513578 DRGXA6NNA5 263 aa8.6□□□□□ -1.03
RNF4-220ENST00000513578 NT5C1B-RDH14C9J2C7 533 aa8.6□□□□□ -1.03
RNF4-220ENST00000513578 AP3B1O00203 1094 aa8.6□□□□□ -1.03
RNF4-220ENST00000513578 RNF103O00237 685 aa8.6□□□□□ -1.03
RNF4-220ENST00000513578 PSMD3O43242 534 aa8.6□□□□□ -1.03
RNF4-220ENST00000513578 SUN1O94901 812 aa8.6□□□□□ -1.03
RNF4-220ENST00000513578 RHOQP17081 205 aa8.6□□□□□ -1.03
RNF4-220ENST00000513578 ATF6P18850 670 aa8.6□□□□□ -1.03
RNF4-220ENST00000513578 DNAJB2P25686 324 aa8.6□□□□□ -1.03
RNF4-220ENST00000513578 PTPN3P26045 913 aa8.6□□□□□ -1.03
RNF4-220ENST00000513578 PPP3CCP48454 512 aa8.6□□□□□ -1.03
RNF4-220ENST00000513578 IFNAR2P48551 515 aa8.6□□□□□ -1.03
RNF4-220ENST00000513578 NRLP54845 237 aa8.6□□□□□ -1.03
RNF4-220ENST00000513578 GEMIN4P57678 1058 aaKnown RBP8.6□□□□□ -1.03
RNF4-220ENST00000513578 WDR5P61964 334 aaKnown RBP8.6□□□□□ -1.03
RNF4-220ENST00000513578 GNGT1P63211 74 aa8.6□□□□□ -1.03
RNF4-220ENST00000513578 IFI35P80217 286 aaPredicted RBP8.6□□□□□ -1.03
RNF4-220ENST00000513578 CREMQ03060 361 aa8.6□□□□□ -1.03
RNF4-220ENST00000513578 GAD2Q05329 585 aa8.6□□□□□ -1.03
RNF4-220ENST00000513578 AP1B1Q10567 949 aa8.6□□□□□ -1.03
RNF4-220ENST00000513578 TAF10Q12962 218 aa8.6□□□□□ -1.03
RNF4-220ENST00000513578 DUSP4Q13115 394 aa8.6□□□□□ -1.03
RNF4-220ENST00000513578 RAB33AQ14088 237 aa8.6□□□□□ -1.03
RNF4-220ENST00000513578 BBS9Q3SYG4 887 aa8.6□□□□□ -1.03
RNF4-220ENST00000513578 MGAT5BQ3V5L5 792 aa8.6□□□□□ -1.03
RNF4-220ENST00000513578 C5orf22Q49AR2 442 aa8.6□□□□□ -1.03
RNF4-220ENST00000513578 GLIPR1L2Q4G1C9 344 aa8.6□□□□□ -1.03
RNF4-220ENST00000513578 ARMC3Q5W041 872 aa8.6□□□□□ -1.03
RNF4-220ENST00000513578 ITPRIPL1Q6GPH6 555 aa8.6□□□□□ -1.03
RNF4-220ENST00000513578 LRRC8BQ6P9F7 803 aa8.6□□□□□ -1.03
RNF4-220ENST00000513578 ZNF449Q6P9G9 518 aa8.6□□□□□ -1.03
RNF4-220ENST00000513578 ADGRD1Q6QNK2 874 aa8.6□□□□□ -1.03
RNF4-220ENST00000513578 C3orf62Q6ZUJ4 267 aa8.6□□□□□ -1.03
RNF4-220ENST00000513578 ZNF534Q76KX8 674 aa8.6□□□□□ -1.03
RNF4-220ENST00000513578 EXOC3L1Q86VI1 746 aa8.6□□□□□ -1.03
RNF4-220ENST00000513578 PALM2Q8IXS6 379 aa8.6□□□□□ -1.03
RNF4-220ENST00000513578 ZNF567Q8N184 647 aa8.6□□□□□ -1.03
RNF4-220ENST00000513578 NPWQ8N729 165 aa8.6□□□□□ -1.03
RNF4-220ENST00000513578 RTL3Q8N8U3 475 aaKnown RBP8.6□□□□□ -1.03
RNF4-220ENST00000513578 ATP6V0D2Q8N8Y2 350 aa8.6□□□□□ -1.03
RNF4-220ENST00000513578 COLGALT1Q8NBJ5 622 aa8.6□□□□□ -1.03
RNF4-220ENST00000513578 FBXO36Q8NEA4 188 aa8.6□□□□□ -1.03
RNF4-220ENST00000513578 ZNF461Q8TAF7 563 aa8.6□□□□□ -1.03
RNF4-220ENST00000513578 UHMK1Q8TAS1 419 aaKnown RBP8.6□□□□□ -1.03
RNF4-220ENST00000513578 ZSCAN18Q8TBC5 510 aaPredicted RBP8.6□□□□□ -1.03
RNF4-220ENST00000513578 ARHGEF2Q92974 986 aaKnown RBP8.6□□□□□ -1.03
RNF4-220ENST00000513578 FBXO32Q969P5 355 aa8.6□□□□□ -1.03
RNF4-220ENST00000513578 AZIN2Q96A70 460 aa8.6□□□□□ -1.03
RNF4-220ENST00000513578 ZBTB9Q96C00 473 aa8.6□□□□□ -1.03
RNF4-220ENST00000513578 TRMT2BQ96GJ1 504 aaKnown RBP8.6□□□□□ -1.03
RNF4-220ENST00000513578 BTN2A3PQ96KV6 586 aa8.6□□□□□ -1.03
RNF4-220ENST00000513578 B3GALT6Q96L58 329 aa8.6□□□□□ -1.03
Retrieved 100 of 20,778 RNA–protein pairs in 15.8 ms