RNA–Protein interactions for RNA: ENST00000508465.5

NUP54-206, Transcript of nucleoporin 54, humanhuman

TSL 3

Gene NUP54, Length 744 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-206ENST00000508465 POU5F1BQ06416 359 aa4.96□□□□□ -1.62
NUP54-206ENST00000508465 PRPF4BQ13523 1007 aaKnown RBP4.96□□□□□ -1.62
NUP54-206ENST00000508465 PKP1Q13835 747 aa4.96□□□□□ -1.62
NUP54-206ENST00000508465 ARL6IP4Q66PJ3 421 aaKnown RBP4.96□□□□□ -1.62
NUP54-206ENST00000508465 HAUS3Q68CZ6 603 aa4.96□□□□□ -1.62
NUP54-206ENST00000508465 NAIF1Q69YI7 327 aaPredicted RBP4.96□□□□□ -1.62
NUP54-206ENST00000508465 NOTUMQ6P988 496 aa4.96□□□□□ -1.62
NUP54-206ENST00000508465 BRAPQ7Z569 592 aa4.96□□□□□ -1.62
NUP54-206ENST00000508465 GPBP1Q86WP2 473 aa4.96□□□□□ -1.62
NUP54-206ENST00000508465 TMEM173Q86WV6 379 aaPredicted RBP4.96□□□□□ -1.62
NUP54-206ENST00000508465 HSCBQ8IWL3 235 aa4.96□□□□□ -1.62
NUP54-206ENST00000508465 ZBTB8OSQ8IWT0 167 aa4.96□□□□□ -1.62
NUP54-206ENST00000508465 GADD45GIP1Q8TAE8 222 aaPredicted RBP4.96□□□□□ -1.62
NUP54-206ENST00000508465 CPT1CQ8TCG5 803 aa4.96□□□□□ -1.62
NUP54-206ENST00000508465 KIFAP3Q92845 792 aa4.96□□□□□ -1.62
NUP54-206ENST00000508465 P2RX5Q93086 422 aa4.96□□□□□ -1.62
NUP54-206ENST00000508465 SNX21Q969T3 373 aa4.96□□□□□ -1.62
NUP54-206ENST00000508465 FOXRED1Q96CU9 486 aaPredicted RBP4.96□□□□□ -1.62
NUP54-206ENST00000508465 ZBTB45Q96K62 511 aaPredicted RBP4.96□□□□□ -1.62
NUP54-206ENST00000508465 IFT74Q96LB3 600 aa4.96□□□□□ -1.62
NUP54-206ENST00000508465 WDR92Q96MX6 357 aa4.96□□□□□ -1.62
NUP54-206ENST00000508465 USP28Q96RU2 1077 aa4.96□□□□□ -1.62
NUP54-206ENST00000508465 VN1R3Q9BXE9 311 aa4.96□□□□□ -1.62
NUP54-206ENST00000508465 TRIM6Q9C030 488 aaPredicted RBP4.96□□□□□ -1.62
NUP54-206ENST00000508465 FZD8Q9H461 694 aa4.96□□□□□ -1.62
NUP54-206ENST00000508465 ZHX3Q9H4I2 956 aa4.96□□□□□ -1.62
NUP54-206ENST00000508465 PDZD7Q9H5P4 517 aa4.96□□□□□ -1.62
NUP54-206ENST00000508465 TBC1D13Q9NVG8 400 aa4.96□□□□□ -1.62
NUP54-206ENST00000508465 SNTG2Q9NY99 539 aa4.96□□□□□ -1.62
NUP54-206ENST00000508465 KCMF1Q9P0J7 381 aa4.96□□□□□ -1.62
NUP54-206ENST00000508465 PFDN2Q9UHV9 154 aa4.96□□□□□ -1.62
NUP54-206ENST00000508465 FBXO2Q9UK22 296 aaPredicted RBP4.96□□□□□ -1.62
NUP54-206ENST00000508465 COG5Q9UP83 839 aa4.96□□□□□ -1.62
NUP54-206ENST00000508465 GDAQ9Y2T3 454 aa4.96□□□□□ -1.62
NUP54-206ENST00000508465 MUC3AQ02505 3323 aa4.96□□□□□ -1.62
NUP54-206ENST00000508465 A0A087X0B3 334 aa4.95□□□□□ -1.62
NUP54-206ENST00000508465 A0A0A6YYK5 440 aaPredicted RBP4.95□□□□□ -1.62
NUP54-206ENST00000508465 GRID2IPA4D2P6 1211 aa4.95□□□□□ -1.62
NUP54-206ENST00000508465 ACKR2O00590 384 aa4.95□□□□□ -1.62
NUP54-206ENST00000508465 NRP1O14786 923 aa4.95□□□□□ -1.62
NUP54-206ENST00000508465 WEE2P0C1S8 567 aa4.95□□□□□ -1.62
NUP54-206ENST00000508465 SPATA31D3P0C874 917 aa4.95□□□□□ -1.62
NUP54-206ENST00000508465 HARSP12081 509 aaKnown RBP4.95□□□□□ -1.62
NUP54-206ENST00000508465 MUTP22033 750 aa4.95□□□□□ -1.62
NUP54-206ENST00000508465 NR4A1P22736 598 aa4.95□□□□□ -1.62
NUP54-206ENST00000508465 AXLP30530 894 aa4.95□□□□□ -1.62
NUP54-206ENST00000508465 DDIT3P35638 169 aa4.95□□□□□ -1.62
NUP54-206ENST00000508465 LONP1P36776 959 aaKnown RBP4.95□□□□□ -1.62
NUP54-206ENST00000508465 NAMPTP43490 491 aa4.95□□□□□ -1.62
NUP54-206ENST00000508465 OR1G1P47890 313 aa4.95□□□□□ -1.62
NUP54-206ENST00000508465 RAB27AP51159 221 aa4.95□□□□□ -1.62
NUP54-206ENST00000508465 EFNA5P52803 228 aa4.95□□□□□ -1.62
NUP54-206ENST00000508465 SLC12A3P55017 1021 aa4.95□□□□□ -1.62
NUP54-206ENST00000508465 IRF9Q00978 393 aa4.95□□□□□ -1.62
NUP54-206ENST00000508465 MAPK7Q13164 816 aa4.95□□□□□ -1.62
NUP54-206ENST00000508465 MAPK6Q16659 721 aa4.95□□□□□ -1.62
NUP54-206ENST00000508465 LONRF2Q1L5Z9 754 aa4.95□□□□□ -1.62
NUP54-206ENST00000508465 AAK1Q2M2I8 961 aa4.95□□□□□ -1.62
NUP54-206ENST00000508465 TMEM119Q4V9L6 283 aa4.95□□□□□ -1.62
NUP54-206ENST00000508465 DCAF17Q5H9S7 520 aaPredicted RBP4.95□□□□□ -1.62
NUP54-206ENST00000508465 HYIQ5T013 277 aa4.95□□□□□ -1.62
NUP54-206ENST00000508465 FOXB2Q5VYV0 432 aa4.95□□□□□ -1.62
NUP54-206ENST00000508465 CDCA2Q69YH5 1023 aaPredicted RBP4.95□□□□□ -1.62
NUP54-206ENST00000508465 CC2D1AQ6P1N0 951 aaPredicted RBP4.95□□□□□ -1.62
NUP54-206ENST00000508465 SLC27A1Q6PCB7 646 aa4.95□□□□□ -1.62
NUP54-206ENST00000508465 SPATA31D4Q6ZUB0 917 aa4.95□□□□□ -1.62
NUP54-206ENST00000508465 OVCH1Q7RTY7 1134 aa4.95□□□□□ -1.62
NUP54-206ENST00000508465 APBB1IPQ7Z5R6 666 aaPredicted RBP4.95□□□□□ -1.62
NUP54-206ENST00000508465 CLEC14AQ86T13 490 aa4.95□□□□□ -1.62
NUP54-206ENST00000508465 CMTM4Q8IZR5 234 aa4.95□□□□□ -1.62
NUP54-206ENST00000508465 VPS52Q8N1B4 723 aa4.95□□□□□ -1.62
NUP54-206ENST00000508465 SLC39A11Q8N1S5 342 aa4.95□□□□□ -1.62
NUP54-206ENST00000508465 LRRC43Q8N309 656 aa4.95□□□□□ -1.62
NUP54-206ENST00000508465 MYCT1Q8N699 235 aa4.95□□□□□ -1.62
NUP54-206ENST00000508465 C12orf76Q8N812 135 aaPredicted RBP4.95□□□□□ -1.62
NUP54-206ENST00000508465 MRPL43Q8N983 215 aaKnown RBP4.95□□□□□ -1.62
NUP54-206ENST00000508465 SYT2Q8N9I0 419 aaPredicted RBP4.95□□□□□ -1.62
NUP54-206ENST00000508465 GSTCDQ8NEC7 633 aa4.95□□□□□ -1.62
NUP54-206ENST00000508465 VN1R2Q8NFZ6 395 aa4.95□□□□□ -1.62
NUP54-206ENST00000508465 OR5AN1Q8NGI8 311 aa4.95□□□□□ -1.62
NUP54-206ENST00000508465 RASSF8Q8NHQ8 419 aa4.95□□□□□ -1.62
NUP54-206ENST00000508465 URGCPQ8TCY9 931 aa4.95□□□□□ -1.62
NUP54-206ENST00000508465 MRPS27Q92552 414 aaKnown RBP4.95□□□□□ -1.62
NUP54-206ENST00000508465 STAMQ92783 540 aa4.95□□□□□ -1.62
NUP54-206ENST00000508465 NKD2Q969F2 451 aaPredicted RBP4.95□□□□□ -1.62
NUP54-206ENST00000508465 PABPC5Q96DU9 382 aaKnown RBP4.95□□□□□ -1.62
NUP54-206ENST00000508465 CALML4Q96GE6 196 aa4.95□□□□□ -1.62
NUP54-206ENST00000508465 IGSF21Q96ID5 467 aa4.95□□□□□ -1.62
NUP54-206ENST00000508465 B3GALT6Q96L58 329 aa4.95□□□□□ -1.62
NUP54-206ENST00000508465 C16orf92Q96LL3 132 aa4.95□□□□□ -1.62
NUP54-206ENST00000508465 BBC3Q96PG8 261 aaPredicted RBP4.95□□□□□ -1.62
NUP54-206ENST00000508465 UHRF1Q96T88 793 aaPredicted RBP4.95□□□□□ -1.62
NUP54-206ENST00000508465 ACO2Q99798 780 aaKnown RBP4.95□□□□□ -1.62
NUP54-206ENST00000508465 PAAF1Q9BRP4 392 aa4.95□□□□□ -1.62
NUP54-206ENST00000508465 TCHPQ9BT92 498 aa4.95□□□□□ -1.62
NUP54-206ENST00000508465 TARS2Q9BW92 718 aaKnown RBP4.95□□□□□ -1.62
NUP54-206ENST00000508465 NFKBIZQ9BYH8 718 aa4.95□□□□□ -1.62
NUP54-206ENST00000508465 CCDC113Q9H0I3 377 aa4.95□□□□□ -1.62
NUP54-206ENST00000508465 LMAN2LQ9H0V9 348 aa4.95□□□□□ -1.62
NUP54-206ENST00000508465 C2orf40Q9H1Z8 148 aa4.95□□□□□ -1.62
Retrieved 100 of 20,778 RNA–protein pairs in 42 ms