RNA–Protein interactions for RNA: ENST00000506244.5

SNCA-209, Transcript of synuclein alpha, humanhuman

APPRIS P1 TSL 2 BASIC

Gene SNCA, Length 570 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Synapse .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNCA-209ENST00000506244 HAPLN3Q96S86 360 aa17.23■□□□□ 0.35
SNCA-209ENST00000506244 PPP1R9BQ96SB3 815 aa17.23■□□□□ 0.35
SNCA-209ENST00000506244 CNPY3Q9BT09 278 aa17.23■□□□□ 0.35
SNCA-209ENST00000506244 SIK2Q9H0K1 926 aa17.23■□□□□ 0.35
SNCA-209ENST00000506244 EPC1Q9H2F5 836 aa17.23■□□□□ 0.35
SNCA-209ENST00000506244 KIAA1522Q9P206 1035 aaPredicted RBP17.23■□□□□ 0.35
SNCA-209ENST00000506244 THAP10Q9P2Z0 257 aaPredicted RBP17.23■□□□□ 0.35
SNCA-209ENST00000506244 RAB23Q9ULC3 237 aa17.23■□□□□ 0.35
SNCA-209ENST00000506244 VANGL2Q9ULK5 521 aa17.23■□□□□ 0.35
SNCA-209ENST00000506244 TCRBV5S1A1TA0A578 114 aa17.22■□□□□ 0.35
SNCA-209ENST00000506244 TCRBV21S2A2A0A5A6 115 aa17.22■□□□□ 0.35
SNCA-209ENST00000506244 CLDN11O75508 207 aa17.22■□□□□ 0.35
SNCA-209ENST00000506244 GJB6O95452 261 aa17.22■□□□□ 0.35
SNCA-209ENST00000506244 ASLP04424 464 aa17.22■□□□□ 0.35
SNCA-209ENST00000506244 POLR2EP19388 210 aaKnown RBP17.22■□□□□ 0.35
SNCA-209ENST00000506244 C15orf59Q2T9L4 293 aaPredicted RBP17.22■□□□□ 0.35
SNCA-209ENST00000506244 PPP1R15BQ5SWA1 713 aa17.22■□□□□ 0.35
SNCA-209ENST00000506244 PLEKHA7Q6IQ23 1121 aa17.22■□□□□ 0.35
SNCA-209ENST00000506244 ANO7Q6IWH7 933 aa17.22■□□□□ 0.35
SNCA-209ENST00000506244 WDR59Q6PJI9 974 aa17.22■□□□□ 0.35
SNCA-209ENST00000506244 RASSF3Q86WH2 238 aa17.22■□□□□ 0.35
SNCA-209ENST00000506244 CNGA4Q8IV77 575 aa17.22■□□□□ 0.35
SNCA-209ENST00000506244 CCAR2Q8N163 923 aaKnown RBP17.22■□□□□ 0.35
SNCA-209ENST00000506244 OR8K1Q8NGG5 319 aa17.22■□□□□ 0.35
SNCA-209ENST00000506244 WFDC5Q8TCV5 224 aa17.22■□□□□ 0.35
SNCA-209ENST00000506244 CENPIQ92674 756 aaPredicted RBP17.22■□□□□ 0.35
SNCA-209ENST00000506244 MYEOVQ96EZ4 313 aa17.22■□□□□ 0.35
SNCA-209ENST00000506244 C1orf74Q96LT6 269 aa17.22■□□□□ 0.35
SNCA-209ENST00000506244 PHOX2BQ99453 314 aa17.22■□□□□ 0.35
SNCA-209ENST00000506244 DNAJC7Q99615 494 aa17.22■□□□□ 0.35
SNCA-209ENST00000506244 ISCUQ9H1K1 167 aa17.22■□□□□ 0.35
SNCA-209ENST00000506244 MRPL47Q9HD33 250 aaKnown RBP17.22■□□□□ 0.35
SNCA-209ENST00000506244 ZDHHC4Q9NPG8 344 aa17.22■□□□□ 0.35
SNCA-209ENST00000506244 CACNA2D2Q9NY47 1150 aa17.22■□□□□ 0.35
SNCA-209ENST00000506244 BCCIPQ9P287 314 aaKnown RBP eCLIP17.22■□□□□ 0.35
SNCA-209ENST00000506244 ADAMTS1Q9UHI8 967 aa17.22■□□□□ 0.35
SNCA-209ENST00000506244 PLA2G4CQ9UP65 541 aa17.22■□□□□ 0.35
SNCA-209ENST00000506244 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP17.21■□□□□ 0.35
SNCA-209ENST00000506244 PRR23AA6NEV1 266 aa17.21■□□□□ 0.35
SNCA-209ENST00000506244 MFAP3LO75121 409 aa17.21■□□□□ 0.35
SNCA-209ENST00000506244 DLDP09622 509 aaKnown RBP17.21■□□□□ 0.35
SNCA-209ENST00000506244 CD70P32970 193 aa17.21■□□□□ 0.35
SNCA-209ENST00000506244 ATXN1P54253 815 aaKnown RBP17.21■□□□□ 0.35
SNCA-209ENST00000506244 CDH4P55283 916 aa17.21■□□□□ 0.35
SNCA-209ENST00000506244 DMWDQ09019 674 aa17.21■□□□□ 0.35
SNCA-209ENST00000506244 LMAN2Q12907 356 aa17.21■□□□□ 0.35
SNCA-209ENST00000506244 ZNF177Q13360 481 aaPredicted RBP17.21■□□□□ 0.35
SNCA-209ENST00000506244 MAMLD1Q13495 774 aa17.21■□□□□ 0.35
SNCA-209ENST00000506244 ARID5BQ14865 1188 aa17.21■□□□□ 0.35
SNCA-209ENST00000506244 FUT11Q495W5 492 aa17.21■□□□□ 0.35
SNCA-209ENST00000506244 MBLAC2Q68D91 279 aa17.21■□□□□ 0.35
SNCA-209ENST00000506244 SERPINA13PQ6UXR4 307 aa17.21■□□□□ 0.35
SNCA-209ENST00000506244 TMEM92Q6UXU6 159 aa17.21■□□□□ 0.35
SNCA-209ENST00000506244 ADIPOR2Q86V24 386 aa17.21■□□□□ 0.35
SNCA-209ENST00000506244 C11orf74Q86VG3 221 aa17.21■□□□□ 0.35
SNCA-209ENST00000506244 GAB3Q8WWW8 586 aa17.21■□□□□ 0.35
SNCA-209ENST00000506244 NTAN1Q96AB6 310 aa17.21■□□□□ 0.35
SNCA-209ENST00000506244 SPACA7Q96KW9 195 aa17.21■□□□□ 0.35
SNCA-209ENST00000506244 DEF6Q9H4E7 631 aa17.21■□□□□ 0.35
SNCA-209ENST00000506244 POLR3BQ9NW08 1133 aaPredicted RBP17.21■□□□□ 0.35
SNCA-209ENST00000506244 CNOT8Q9UFF9 292 aaKnown RBP17.21■□□□□ 0.35
SNCA-209ENST00000506244 HCN2Q9UL51 889 aa17.21■□□□□ 0.35
SNCA-209ENST00000506244 SMG5Q9UPR3 1016 aaKnown RBP17.21■□□□□ 0.35
SNCA-209ENST00000506244 STON1Q9Y6Q2 735 aa17.21■□□□□ 0.35
SNCA-209ENST00000506244 ANTXRLA6NF34 631 aa17.2■□□□□ 0.34
SNCA-209ENST00000506244 E9PAM4 449 aa17.2■□□□□ 0.34
SNCA-209ENST00000506244 CCP110O43303 1012 aa17.2■□□□□ 0.34
SNCA-209ENST00000506244 ATMINO43313 823 aaPredicted RBP17.2■□□□□ 0.34
SNCA-209ENST00000506244 SYNCRIPO60506 623 aaKnown RBP17.2■□□□□ 0.34
SNCA-209ENST00000506244 RPP40O75818 363 aaKnown RBP17.2■□□□□ 0.34
SNCA-209ENST00000506244 WASP42768 502 aa17.2■□□□□ 0.34
SNCA-209ENST00000506244 PXNP49023 591 aaPredicted RBP17.2■□□□□ 0.34
SNCA-209ENST00000506244 MRE11P49959 708 aa17.2■□□□□ 0.34
SNCA-209ENST00000506244 AIF1P55008 147 aa17.2■□□□□ 0.34
SNCA-209ENST00000506244 HDAC4P56524 1084 aa17.2■□□□□ 0.34
SNCA-209ENST00000506244 ST8SIA6P61647 398 aa17.2■□□□□ 0.34
SNCA-209ENST00000506244 RPL7AP62424 266 aaKnown RBP17.2■□□□□ 0.34
SNCA-209ENST00000506244 SULT2A1Q06520 285 aa17.2■□□□□ 0.34
SNCA-209ENST00000506244 ENPP2Q13822 863 aa17.2■□□□□ 0.34
SNCA-209ENST00000506244 BYSLQ13895 437 aaKnown RBP17.2■□□□□ 0.34
SNCA-209ENST00000506244 ZNF234Q14588 700 aa17.2■□□□□ 0.34
SNCA-209ENST00000506244 C5orf22Q49AR2 442 aa17.2■□□□□ 0.34
SNCA-209ENST00000506244 FNDC3BQ53EP0 1204 aaKnown RBP17.2■□□□□ 0.34
SNCA-209ENST00000506244 PITRM1Q5JRX3 1037 aa17.2■□□□□ 0.34
SNCA-209ENST00000506244 TMEM215Q68D42 235 aa17.2■□□□□ 0.34
SNCA-209ENST00000506244 CEP68Q76N32 757 aa17.2■□□□□ 0.34
SNCA-209ENST00000506244 TMC6Q7Z403 805 aa17.2■□□□□ 0.34
SNCA-209ENST00000506244 CIR1Q86X95 450 aaPredicted RBP17.2■□□□□ 0.34
SNCA-209ENST00000506244 MDGA1Q8NFP4 955 aa17.2■□□□□ 0.34
SNCA-209ENST00000506244 FNIP1Q8TF40 1166 aa17.2■□□□□ 0.34
SNCA-209ENST00000506244 HMGB4Q8WW32 186 aa17.2■□□□□ 0.34
SNCA-209ENST00000506244 ACOX2Q99424 681 aa17.2■□□□□ 0.34
SNCA-209ENST00000506244 NCAPGQ9BPX3 1015 aa17.2■□□□□ 0.34
SNCA-209ENST00000506244 FBRSQ9HAH7 460 aa17.2■□□□□ 0.34
SNCA-209ENST00000506244 ABHD10Q9NUJ1 306 aa17.2■□□□□ 0.34
SNCA-209ENST00000506244 MYO18AQ92614 2054 aaKnown RBP17.2■□□□□ 0.34
SNCA-209ENST00000506244 PIEZO1Q92508 2521 aa17.19■□□□□ 0.34
SNCA-209ENST00000506244 IGLV3-10A0A075B6K4 115 aa17.19■□□□□ 0.34
SNCA-209ENST00000506244 A0A1W2PQF6 199 aa17.19■□□□□ 0.34
SNCA-209ENST00000506244 SSU72P8A0A1W2PR75 194 aa17.19■□□□□ 0.34
Retrieved 100 of 20,778 RNA–protein pairs in 10.2 ms