RNA–Protein interactions for RNA: ENST00000495100.1

GPC1-209, Transcript of glypican 1, humanhuman

TSL 1 (best)

Gene GPC1, Length 3,525 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GPC1-209ENST00000495100 SCNN1GP51170 649 aa13.79□□□□□ -0.2
GPC1-209ENST00000495100 CSHL1Q14406 222 aa13.79□□□□□ -0.2
GPC1-209ENST00000495100 PRPSAP1Q14558 356 aa13.79□□□□□ -0.2
GPC1-209ENST00000495100 PLD6Q8N2A8 252 aaKnown RBP13.79□□□□□ -0.2
GPC1-209ENST00000495100 PAAF1Q9BRP4 392 aa13.79□□□□□ -0.2
GPC1-209ENST00000495100 SPON2Q9BUD6 331 aa13.79□□□□□ -0.2
GPC1-209ENST00000495100 TRIM4Q9C037 500 aa13.79□□□□□ -0.2
GPC1-209ENST00000495100 PHACTR1Q9C0D0 580 aa13.79□□□□□ -0.2
GPC1-209ENST00000495100 TKTL2Q9H0I9 626 aa13.79□□□□□ -0.2
GPC1-209ENST00000495100 CCDC134Q9H6E4 229 aa13.79□□□□□ -0.2
GPC1-209ENST00000495100 STYXL1Q9Y6J8 313 aa13.79□□□□□ -0.2
GPC1-209ENST00000495100 NRAPQ86VF7 1730 aa13.79□□□□□ -0.2
GPC1-209ENST00000495100 SMIM28A0A1B0GU29 152 aa13.79□□□□□ -0.2
GPC1-209ENST00000495100 C3orf70A6NLC5 250 aaPredicted RBP13.79□□□□□ -0.2
GPC1-209ENST00000495100 TMEM233B4DJY2 109 aa13.79□□□□□ -0.2
GPC1-209ENST00000495100 MDM4O15151 490 aa13.79□□□□□ -0.2
GPC1-209ENST00000495100 MAGEB2O15479 319 aa13.79□□□□□ -0.2
GPC1-209ENST00000495100 ITGA2BP08514 1039 aa13.79□□□□□ -0.2
GPC1-209ENST00000495100 SMPD1P17405 629 aa13.79□□□□□ -0.2
GPC1-209ENST00000495100 CHRNA4P43681 627 aa13.79□□□□□ -0.2
GPC1-209ENST00000495100 COPAP53621 1224 aa13.79□□□□□ -0.2
GPC1-209ENST00000495100 BST2Q10589 180 aaKnown RBP13.79□□□□□ -0.2
GPC1-209ENST00000495100 PPM1LQ5SGD2 360 aa13.79□□□□□ -0.2
GPC1-209ENST00000495100 PDPK2PQ6A1A2 396 aa13.79□□□□□ -0.2
GPC1-209ENST00000495100 PHTF2Q8N3S3 785 aa13.79□□□□□ -0.2
GPC1-209ENST00000495100 CYP2S1Q96SQ9 504 aa13.79□□□□□ -0.2
GPC1-209ENST00000495100 USP29Q9HBJ7 922 aa13.79□□□□□ -0.2
GPC1-209ENST00000495100 POPDC2Q9HBU9 364 aa13.79□□□□□ -0.2
GPC1-209ENST00000495100 PCDHGC3Q9UN70 934 aa13.79□□□□□ -0.2
GPC1-209ENST00000495100 TEX264Q9Y6I9 313 aa13.79□□□□□ -0.2
GPC1-209ENST00000495100 NHSQ6T4R5 1651 aa13.79□□□□□ -0.2
GPC1-209ENST00000495100 UBA6A0AVT1 1052 aaPredicted RBP13.78□□□□□ -0.2
GPC1-209ENST00000495100 PMM2O15305 246 aa13.78□□□□□ -0.2
GPC1-209ENST00000495100 ZBTB24O43167 697 aaPredicted RBP13.78□□□□□ -0.2
GPC1-209ENST00000495100 SLC25A27O95847 323 aa13.78□□□□□ -0.2
GPC1-209ENST00000495100 FAM200BP0CF97 657 aa13.78□□□□□ -0.2
GPC1-209ENST00000495100 VAV1P15498 845 aa13.78□□□□□ -0.2
GPC1-209ENST00000495100 HDCP19113 662 aa13.78□□□□□ -0.2
GPC1-209ENST00000495100 MPSTP25325 297 aa13.78□□□□□ -0.2
GPC1-209ENST00000495100 CACNA2D1P54289 1103 aa13.78□□□□□ -0.2
GPC1-209ENST00000495100 BCAT1P54687 386 aa13.78□□□□□ -0.2
GPC1-209ENST00000495100 AP2B1P63010 937 aa13.78□□□□□ -0.2
GPC1-209ENST00000495100 OCRLQ01968 901 aa13.78□□□□□ -0.2
GPC1-209ENST00000495100 NSUN2Q08J23 767 aaKnown RBP eCLIP13.78□□□□□ -0.2
GPC1-209ENST00000495100 ANO4Q32M45 955 aa13.78□□□□□ -0.2
GPC1-209ENST00000495100 ULK2Q8IYT8 1036 aa13.78□□□□□ -0.2
GPC1-209ENST00000495100 KCTD4Q8WVF5 259 aa13.78□□□□□ -0.2
GPC1-209ENST00000495100 CNBD2Q96M20 576 aa13.78□□□□□ -0.2
GPC1-209ENST00000495100 ASB7Q9H672 318 aa13.78□□□□□ -0.2
GPC1-209ENST00000495100 KANSL3Q9P2N6 904 aa13.78□□□□□ -0.2
GPC1-209ENST00000495100 ATXN2Q99700 1313 aaKnown RBP13.78□□□□□ -0.2
GPC1-209ENST00000495100 CRCPO75575 148 aa13.78□□□□□ -0.2
GPC1-209ENST00000495100 YBX3P16989 372 aaKnown RBP eCLIP13.78□□□□□ -0.2
GPC1-209ENST00000495100 MX2P20592 715 aa13.78□□□□□ -0.2
GPC1-209ENST00000495100 ABL2P42684 1182 aa13.78□□□□□ -0.2
GPC1-209ENST00000495100 SOX4Q06945 474 aaPredicted RBP13.78□□□□□ -0.2
GPC1-209ENST00000495100 SNAPC2Q13487 334 aa13.78□□□□□ -0.2
GPC1-209ENST00000495100 PDK2Q15119 407 aa13.78□□□□□ -0.2
GPC1-209ENST00000495100 CCL14Q16627 93 aa13.78□□□□□ -0.2
GPC1-209ENST00000495100 LCLAT1Q6UWP7 414 aa13.78□□□□□ -0.2
GPC1-209ENST00000495100 DENND6AQ8IWF6 608 aa13.78□□□□□ -0.2
GPC1-209ENST00000495100 ZNF781Q8N8C0 355 aa13.78□□□□□ -0.2
GPC1-209ENST00000495100 TMEM40Q8WWA1 233 aa13.78□□□□□ -0.2
GPC1-209ENST00000495100 NMD3Q96D46 503 aaKnown RBP13.78□□□□□ -0.2
GPC1-209ENST00000495100 TNIP3Q96KP6 325 aa13.78□□□□□ -0.2
GPC1-209ENST00000495100 PPM1HQ9ULR3 514 aa13.78□□□□□ -0.2
GPC1-209ENST00000495100 CRYL1Q9Y2S2 319 aa13.78□□□□□ -0.2
GPC1-209ENST00000495100 ACTL7BQ9Y614 415 aa13.78□□□□□ -0.2
GPC1-209ENST00000495100 NRP1O14786 923 aa13.78□□□□□ -0.2
GPC1-209ENST00000495100 OAS1P00973 400 aaKnown RBP13.78□□□□□ -0.2
GPC1-209ENST00000495100 PDE1CQ14123 709 aaPredicted RBP13.78□□□□□ -0.2
GPC1-209ENST00000495100 CRYMQ14894 314 aa13.78□□□□□ -0.2
GPC1-209ENST00000495100 SLC27A1Q6PCB7 646 aa13.78□□□□□ -0.2
GPC1-209ENST00000495100 SNX32Q86XE0 403 aa13.78□□□□□ -0.2
GPC1-209ENST00000495100 SLC41A1Q8IVJ1 513 aa13.78□□□□□ -0.2
GPC1-209ENST00000495100 ZNF567Q8N184 647 aa13.78□□□□□ -0.2
GPC1-209ENST00000495100 SCAMP5Q8TAC9 235 aa13.78□□□□□ -0.2
GPC1-209ENST00000495100 MCRS1Q96EZ8 462 aa13.78□□□□□ -0.2
GPC1-209ENST00000495100 KLHL5Q96PQ7 755 aa13.78□□□□□ -0.2
GPC1-209ENST00000495100 ARHGEF4Q9NR80 690 aa13.78□□□□□ -0.2
GPC1-209ENST00000495100 SLC5A4Q9NY91 659 aa13.78□□□□□ -0.2
GPC1-209ENST00000495100 C10orf71Q711Q0 1435 aa13.78□□□□□ -0.2
GPC1-209ENST00000495100 BHMG1C9JSJ3 638 aaPredicted RBP13.77□□□□□ -0.2
GPC1-209ENST00000495100 L1CAMP32004 1257 aa13.77□□□□□ -0.2
GPC1-209ENST00000495100 RPS6KA2Q15349 733 aa13.77□□□□□ -0.2
GPC1-209ENST00000495100 LARP7Q4G0J3 582 aaKnown RBP eCLIP13.77□□□□□ -0.2
GPC1-209ENST00000495100 TMEM259Q4ZIN3 620 aa13.77□□□□□ -0.2
GPC1-209ENST00000495100 PACS1Q6VY07 963 aa13.77□□□□□ -0.2
GPC1-209ENST00000495100 TRIM42Q8IWZ5 723 aa13.77□□□□□ -0.2
GPC1-209ENST00000495100 B3GALNT2Q8NCR0 500 aa13.77□□□□□ -0.2
GPC1-209ENST00000495100 PIGVQ9NUD9 493 aa13.77□□□□□ -0.2
GPC1-209ENST00000495100 ITGA11Q9UKX5 1188 aa13.77□□□□□ -0.2
GPC1-209ENST00000495100 MCM3APO60318 1980 aa13.77□□□□□ -0.2
GPC1-209ENST00000495100 LTFP02788 710 aa13.77□□□□□ -0.21
GPC1-209ENST00000495100 SP100P23497 879 aaPredicted RBP13.77□□□□□ -0.21
GPC1-209ENST00000495100 MRPS5P82675 430 aaKnown RBP13.77□□□□□ -0.21
GPC1-209ENST00000495100 SLC34A1Q06495 639 aa13.77□□□□□ -0.21
GPC1-209ENST00000495100 TBL3Q12788 808 aaKnown RBP13.77□□□□□ -0.21
GPC1-209ENST00000495100 MPP3Q13368 585 aa13.77□□□□□ -0.21
GPC1-209ENST00000495100 NRF1Q16656 503 aa13.77□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 32.6 ms